RNA–Protein interactions for RNA: YLR360W

VPS38, Transcript of Part of a Vps34p phosphatidylinositol 3-kinase complex, yeastyeast

Gene VPS38, Length 1,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS38YLR360W TOM40P23644 387 aaKnown RBP1.92□□□□□ -2.1
VPS38YLR360W RAD51P25454 400 aa1.92□□□□□ -2.1
VPS38YLR360W BMH1P29311 267 aaKnown RBP1.92□□□□□ -2.1
VPS38YLR360W MRPL40P36534 297 aa1.92□□□□□ -2.1
VPS38YLR360W HMT1P38074 348 aa1.92□□□□□ -2.1
VPS38YLR360W NIF3P53081 288 aa1.92□□□□□ -2.1
VPS38YLR360W RPL26BP53221 127 aaKnown RBP1.92□□□□□ -2.1
VPS38YLR360W ARP5P53946 755 aa1.92□□□□□ -2.1
VPS38YLR360W SDC1Q03323 175 aa1.92□□□□□ -2.1
VPS38YLR360W SEC10Q06245 871 aa1.92□□□□□ -2.1
VPS38YLR360W LOA1Q06508 300 aa1.92□□□□□ -2.1
VPS38YLR360W MRPL23Q12487 163 aaPredicted RBP1.92□□□□□ -2.1
VPS38YLR360W NUP170P38181 1502 aa1.92□□□□□ -2.1
VPS38YLR360W YLR419WQ06698 1435 aaKnown RBP1.92□□□□□ -2.1
VPS38YLR360W ESP1Q03018 1630 aa1.92□□□□□ -2.1
VPS38YLR360W YAL064W-BO13512 126 aa1.91□□□□□ -2.1
VPS38YLR360W MEK1P24719 497 aaPredicted RBP1.91□□□□□ -2.1
VPS38YLR360W SLM2P53955 656 aa1.91□□□□□ -2.1
VPS38YLR360W VBA1Q04301 562 aa1.91□□□□□ -2.1
VPS38YLR360W YLR413WQ06689 675 aa1.91□□□□□ -2.1
VPS38YLR360W YOR283WQ12040 230 aaKnown RBP1.91□□□□□ -2.1
VPS38YLR360W PER33Q12144 273 aa1.91□□□□□ -2.1
VPS38YLR360W SIN3P22579 1536 aa1.91□□□□□ -2.1
VPS38YLR360W HSL1P34244 1518 aa1.91□□□□□ -2.1
VPS38YLR360W TY1B-BRQ12193 1756 aa1.91□□□□□ -2.1
VPS38YLR360W TY1B-GR3Q12316 1755 aa1.91□□□□□ -2.1
VPS38YLR360W TY1B-ORQ92393 1755 aa1.91□□□□□ -2.1
VPS38YLR360W RPO31P04051 1460 aa1.91□□□□□ -2.1
VPS38YLR360W BUD4P47136 1447 aa1.91□□□□□ -2.1
VPS38YLR360W TRM732Q03496 1420 aa1.91□□□□□ -2.1
VPS38YLR360W SSK2P53599 1579 aa1.91□□□□□ -2.1
VPS38YLR360W FRS2P15625 503 aaKnown RBP1.91□□□□□ -2.1
VPS38YLR360W PEX3P28795 441 aa1.91□□□□□ -2.1
VPS38YLR360W SER33P40510 469 aa1.91□□□□□ -2.1
VPS38YLR360W DSN1P40568 576 aa1.91□□□□□ -2.1
VPS38YLR360W YOR268CQ08734 132 aa1.91□□□□□ -2.1
VPS38YLR360W RPL4AP10664 362 aaKnown RBP1.9□□□□□ -2.11
VPS38YLR360W DPB2P24482 689 aaPredicted RBP1.9□□□□□ -2.11
VPS38YLR360W SFC1P33303 322 aa1.9□□□□□ -2.11
VPS38YLR360W SPT8P38915 602 aa1.9□□□□□ -2.11
VPS38YLR360W NPT1P39683 429 aaKnown RBP1.9□□□□□ -2.11
VPS38YLR360W GON7P46984 123 aa1.9□□□□□ -2.11
VPS38YLR360W RPL4BP49626 362 aaKnown RBP1.9□□□□□ -2.11
VPS38YLR360W GGA1Q06336 557 aa1.9□□□□□ -2.11
VPS38YLR360W NOT5Q12514 560 aaPredicted RBP1.9□□□□□ -2.11
VPS38YLR360W YIL002W-AQ3E7Z5 69 aa1.9□□□□□ -2.11
VPS38YLR360W YOS9Q99220 542 aa1.9□□□□□ -2.11
VPS38YLR360W TY1B-JR2P47100 1755 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W TY1B-ER2Q03619 1755 aa1.89□□□□□ -2.11
VPS38YLR360W TY1B-MR1Q04214 1755 aa1.89□□□□□ -2.11
VPS38YLR360W TY1B-MR2Q04670 1755 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W TY1B-LR1Q12088 1755 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W TY1B-NL1Q12112 1755 aa1.89□□□□□ -2.11
VPS38YLR360W TY1B-GR1Q12141 1755 aa1.89□□□□□ -2.11
VPS38YLR360W TY1B-BLQ12490 1755 aa1.89□□□□□ -2.11
VPS38YLR360W DNA2P38859 1522 aa1.89□□□□□ -2.11
VPS38YLR360W SPT6P23615 1451 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W UTP10P42945 1769 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W POF1P25576 258 aa1.89□□□□□ -2.11
VPS38YLR360W YHR045WP38775 560 aa1.89□□□□□ -2.11
VPS38YLR360W MRX5P47007 382 aa1.89□□□□□ -2.11
VPS38YLR360W TIM21P53220 239 aa1.89□□□□□ -2.11
VPS38YLR360W TRM44Q02648 567 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W CGI121Q03705 181 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W YMR114CQ04471 368 aaKnown RBP1.89□□□□□ -2.11
VPS38YLR360W BEM2P39960 2167 aaKnown RBP1.88□□□□□ -2.11
VPS38YLR360W SNF2P22082 1703 aa1.88□□□□□ -2.11
VPS38YLR360W TRM3Q07527 1436 aa1.88□□□□□ -2.11
VPS38YLR360W YJL028WP47062 111 aa1.88□□□□□ -2.11
VPS38YLR360W DAN1P47178 298 aa1.88□□□□□ -2.11
VPS38YLR360W MND1P53102 219 aa1.88□□□□□ -2.11
VPS38YLR360W CDC14Q00684 551 aa1.88□□□□□ -2.11
VPS38YLR360W YPR172WQ06608 200 aa1.88□□□□□ -2.11
VPS38YLR360W FMP16Q12497 93 aa1.88□□□□□ -2.11
VPS38YLR360W AI5_BETAQ9ZZX0 354 aa1.88□□□□□ -2.11
VPS38YLR360W DUR1,2P32528 1835 aaKnown RBP1.88□□□□□ -2.11
VPS38YLR360W ESC1Q03661 1658 aaKnown RBP1.87□□□□□ -2.11
VPS38YLR360W DBP3P20447 523 aaKnown RBP1.87□□□□□ -2.11
VPS38YLR360W RNP1P32385 249 aa1.87□□□□□ -2.11
VPS38YLR360W YKL070WP36087 169 aa1.87□□□□□ -2.11
VPS38YLR360W MAL32P38158 584 aa1.87□□□□□ -2.11
VPS38YLR360W HEK2P38199 381 aaKnown RBP RIP-Chip data1.87□□□□□ -2.11not detected
VPS38YLR360W COG3P40094 801 aa1.87□□□□□ -2.11
VPS38YLR360W FMP33P46998 180 aa1.87□□□□□ -2.11
VPS38YLR360W MAL12P53341 584 aa1.87□□□□□ -2.11
VPS38YLR360W SPP2Q02521 185 aa1.87□□□□□ -2.11
VPS38YLR360W ATC1Q04005 294 aa1.87□□□□□ -2.11
VPS38YLR360W ARV1Q06541 321 aa1.87□□□□□ -2.11
VPS38YLR360W CTR3Q06686 241 aa1.87□□□□□ -2.11
VPS38YLR360W SMT3Q12306 101 aaKnown RBP1.87□□□□□ -2.11
VPS38YLR360W PST1Q12355 444 aa1.87□□□□□ -2.11
VPS38YLR360W YPL247CQ12523 523 aa1.87□□□□□ -2.11
VPS38YLR360W REV3P14284 1504 aa1.87□□□□□ -2.11
VPS38YLR360W PDR5P33302 1511 aaKnown RBP1.87□□□□□ -2.11
VPS38YLR360W RPO21P04050 1733 aaKnown RBP1.86□□□□□ -2.11
VPS38YLR360W RRP5Q05022 1729 aaKnown RBP1.86□□□□□ -2.11
VPS38YLR360W TAF2P23255 1407 aa1.86□□□□□ -2.11
VPS38YLR360W RPP0P05317 312 aaKnown RBP1.86□□□□□ -2.11
VPS38YLR360W COS2P0CX12 379 aa1.86□□□□□ -2.11
VPS38YLR360W COS3P0CX13 379 aa1.86□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 57.7 ms