RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W CIK1Q01649 594 aa3.26□□□□□ -1.89
SSL1YLR005W DIG2Q03373 323 aaKnown RBP3.26□□□□□ -1.89
SSL1YLR005W BNA7Q04066 261 aa3.26□□□□□ -1.89
SSL1YLR005W HLR1Q04429 423 aa3.26□□□□□ -1.89
SSL1YLR005W MRPL51Q06090 140 aaPredicted RBP3.26□□□□□ -1.89
SSL1YLR005W ORM2Q06144 216 aa3.26□□□□□ -1.89
SSL1YLR005W BCP1Q06338 283 aa3.26□□□□□ -1.89
SSL1YLR005W GPI11Q06636 219 aa3.26□□□□□ -1.89
SSL1YLR005W HRT1Q08273 121 aa3.26□□□□□ -1.89
SSL1YLR005W FRE8Q12209 686 aa3.26□□□□□ -1.89
SSL1YLR005W MCT1Q12283 360 aa3.26□□□□□ -1.89
SSL1YLR005W PDE2P06776 526 aa3.25□□□□□ -1.89
SSL1YLR005W DSF1P0CX08 502 aa3.25□□□□□ -1.89
SSL1YLR005W YNR073CP0CX09 502 aa3.25□□□□□ -1.89
SSL1YLR005W RRP7P25368 297 aaPredicted RBP3.25□□□□□ -1.89
SSL1YLR005W YCR100CP25606 316 aa3.25□□□□□ -1.89
SSL1YLR005W PPA2P28239 310 aa3.25□□□□□ -1.89
SSL1YLR005W VPH2P32341 215 aa3.25□□□□□ -1.89
SSL1YLR005W GLC7P32598 312 aaKnown RBP3.25□□□□□ -1.89
SSL1YLR005W CLG1P35190 452 aa3.25□□□□□ -1.89
SSL1YLR005W YBR241CP38142 488 aa3.25□□□□□ -1.89
SSL1YLR005W SRO77P38163 1010 aa3.25□□□□□ -1.89
SSL1YLR005W GPI18P38211 433 aa3.25□□□□□ -1.89
SSL1YLR005W BUR6P40096 142 aa3.25□□□□□ -1.89
SSL1YLR005W NAS2P40555 220 aa3.25□□□□□ -1.89
SSL1YLR005W PFS2P42841 465 aaKnown RBP3.25□□□□□ -1.89
SSL1YLR005W GET1P53192 235 aa3.25□□□□□ -1.89
SSL1YLR005W YNR064CP53750 290 aa3.25□□□□□ -1.89
SSL1YLR005W RIM9Q04734 239 aa3.25□□□□□ -1.89
SSL1YLR005W GTB1Q04924 702 aa3.25□□□□□ -1.89
SSL1YLR005W YDL114WQ07530 308 aa3.25□□□□□ -1.89
SSL1YLR005W MCH4Q08268 501 aa3.25□□□□□ -1.89
SSL1YLR005W SYC1Q08553 188 aaPredicted RBP3.25□□□□□ -1.89
SSL1YLR005W RRS1Q08746 203 aaKnown RBP3.25□□□□□ -1.89
SSL1YLR005W UIP4Q08926 304 aa3.25□□□□□ -1.89
SSL1YLR005W URA3P03962 267 aa3.25□□□□□ -1.89
SSL1YLR005W NAM2P11325 894 aa3.25□□□□□ -1.89
SSL1YLR005W KRR1P25586 316 aaPredicted RBP3.25□□□□□ -1.89
SSL1YLR005W MTC7P32633 139 aa3.25□□□□□ -1.89
SSL1YLR005W VMA11P32842 164 aa3.25□□□□□ -1.89
SSL1YLR005W SUR1P33300 382 aa3.25□□□□□ -1.89
SSL1YLR005W SDS22P36047 338 aa3.25□□□□□ -1.89
SSL1YLR005W SRP102P36057 244 aaPredicted RBP3.25□□□□□ -1.89
SSL1YLR005W VBA2P38358 474 aaKnown RBP3.25□□□□□ -1.89
SSL1YLR005W TRM5P38793 499 aa3.25□□□□□ -1.89
SSL1YLR005W ARO9P38840 513 aaPredicted RBP3.25□□□□□ -1.89
SSL1YLR005W STB1P42845 420 aa3.25□□□□□ -1.89
SSL1YLR005W GEP7P53171 287 aa3.25□□□□□ -1.89
SSL1YLR005W YNR071CP53757 342 aa3.25□□□□□ -1.89
SSL1YLR005W GTR1Q00582 310 aa3.25□□□□□ -1.89
SSL1YLR005W RSM23Q01163 450 aa3.25□□□□□ -1.89
SSL1YLR005W YPL077CQ02831 240 aa3.25□□□□□ -1.89
SSL1YLR005W YDC1Q02896 317 aa3.25□□□□□ -1.89
SSL1YLR005W ABZ2Q03266 374 aa3.25□□□□□ -1.89
SSL1YLR005W PIN3Q06449 215 aa3.25□□□□□ -1.89
SSL1YLR005W TPO3Q06451 622 aa3.25□□□□□ -1.89
SSL1YLR005W PRP11Q07350 266 aaPredicted RBP3.25□□□□□ -1.89
SSL1YLR005W GEP3Q08622 556 aa3.25□□□□□ -1.89
SSL1YLR005W YCL048W-AQ2V2Q2 79 aa3.25□□□□□ -1.89
SSL1YLR005W MDN1Q12019 4910 aaKnown RBP3.24□□□□□ -1.89
SSL1YLR005W TIM9O74700 87 aa3.24□□□□□ -1.89
SSL1YLR005W NFT1P0CE68 1218 aa3.24□□□□□ -1.89
SSL1YLR005W SNF6P18888 332 aa3.24□□□□□ -1.89
SSL1YLR005W TFC1P32367 649 aa3.24□□□□□ -1.89
SSL1YLR005W RPC34P32910 317 aa3.24□□□□□ -1.89
SSL1YLR005W PRY2P36110 329 aa3.24□□□□□ -1.89
SSL1YLR005W SKG1P36169 355 aa3.24□□□□□ -1.89
SSL1YLR005W RPS20P38701 121 aaKnown RBP3.24□□□□□ -1.89
SSL1YLR005W RBG1P39729 369 aa3.24□□□□□ -1.89
SSL1YLR005W YFL015CP43578 164 aa3.24□□□□□ -1.89
SSL1YLR005W LOH1P47055 219 aa3.24□□□□□ -1.89
SSL1YLR005W YDL183CP48569 320 aa3.24□□□□□ -1.89
SSL1YLR005W YPL108WQ02872 168 aaPredicted RBP3.24□□□□□ -1.89
SSL1YLR005W ATG26Q06321 1198 aa3.24□□□□□ -1.89
SSL1YLR005W ARR3Q06598 404 aa3.24□□□□□ -1.89
SSL1YLR005W RKM1Q08961 583 aaPredicted RBP3.24□□□□□ -1.89
SSL1YLR005W TGS1Q12052 315 aa3.24□□□□□ -1.89
SSL1YLR005W SPC3Q12133 184 aa3.24□□□□□ -1.89
SSL1YLR005W NFI1Q12216 726 aa3.24□□□□□ -1.89
SSL1YLR005W NKP1Q12493 238 aa3.24□□□□□ -1.89
SSL1YLR005W YOL159C-AQ3E769 90 aa3.24□□□□□ -1.89
SSL1YLR005W BUD5P25300 642 aaPredicted RBP3.23□□□□□ -1.89
SSL1YLR005W GSH1P32477 678 aa3.23□□□□□ -1.89
SSL1YLR005W IES6P32617 166 aa3.23□□□□□ -1.89
SSL1YLR005W ICS2P38284 255 aa3.23□□□□□ -1.89
SSL1YLR005W LNP1P38878 278 aa3.23□□□□□ -1.89
SSL1YLR005W MRX1P40050 688 aa3.23□□□□□ -1.89
SSL1YLR005W FLX1P40464 311 aa3.23□□□□□ -1.89
SSL1YLR005W NUP49Q02199 472 aa3.23□□□□□ -1.89
SSL1YLR005W GPI17Q04080 534 aa3.23□□□□□ -1.89
SSL1YLR005W SPC2Q04969 178 aa3.23□□□□□ -1.89
SSL1YLR005W NNT1Q05874 261 aa3.23□□□□□ -1.89
SSL1YLR005W YPR098CQ06089 161 aa3.23□□□□□ -1.89
SSL1YLR005W IRC25Q07951 179 aa3.23□□□□□ -1.89
SSL1YLR005W USB1Q12208 290 aaKnown RBP3.23□□□□□ -1.89
SSL1YLR005W YDL007C-AQ2V2Q0 85 aa3.23□□□□□ -1.89
SSL1YLR005W YGR035W-AQ45U48 73 aa3.23□□□□□ -1.89
SSL1YLR005W TDH2P00358 332 aaKnown RBP3.22□□□□□ -1.89
SSL1YLR005W TDH3P00359 332 aaKnown RBP RIP-Chip data3.22□□□□□ -1.89not detected
SSL1YLR005W MRPS28P21771 286 aa3.22□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 105.4 ms