RNA–Protein interactions for RNA: YJL154C

VPS35, Transcript of Endosomal subunit of membrane-associated retromer complex, yeastyeast

Gene VPS35, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS35YJL154C CYM1P32898 989 aa1.67□□□□□ -2.14
VPS35YJL154C YKL162CP36052 402 aa1.67□□□□□ -2.14
VPS35YJL154C SHC1P39000 512 aa1.67□□□□□ -2.14
VPS35YJL154C RRT13P40042 185 aa1.67□□□□□ -2.14
VPS35YJL154C TMA22P47089 198 aaPredicted RBP1.67□□□□□ -2.14
VPS35YJL154C RMI1Q02685 241 aa1.67□□□□□ -2.14
VPS35YJL154C YLR283WQ05867 314 aa1.67□□□□□ -2.14
VPS35YJL154C YOL029CQ08187 201 aa1.67□□□□□ -2.14
VPS35YJL154C RPS3P05750 240 aaKnown RBP1.67□□□□□ -2.14
VPS35YJL154C AIM29P36154 155 aa1.67□□□□□ -2.14
VPS35YJL154C DSN1P40568 576 aa1.67□□□□□ -2.14
VPS35YJL154C PMT4P46971 762 aa1.67□□□□□ -2.14
VPS35YJL154C SEH1P53011 349 aaKnown RBP1.67□□□□□ -2.14
VPS35YJL154C OKP1P53298 406 aa1.67□□□□□ -2.14
VPS35YJL154C CUS2P53830 285 aaPredicted RBP1.67□□□□□ -2.14
VPS35YJL154C YNL260CP53846 198 aa1.67□□□□□ -2.14
VPS35YJL154C GPN3Q06543 272 aa1.67□□□□□ -2.14
VPS35YJL154C YOR376WQ08900 122 aa1.67□□□□□ -2.14
VPS35YJL154C YPL245WQ12179 454 aaKnown RBP1.67□□□□□ -2.14
VPS35YJL154C ATG31Q12421 196 aa1.67□□□□□ -2.14
VPS35YJL154C PRM4Q12498 284 aa1.67□□□□□ -2.14
VPS35YJL154C SIR4P11978 1358 aa1.67□□□□□ -2.14
VPS35YJL154C FLO11P08640 1367 aa1.67□□□□□ -2.14
VPS35YJL154C TDH2P00358 332 aaKnown RBP1.67□□□□□ -2.14
VPS35YJL154C TDH3P00359 332 aaKnown RBP RIP-Chip data1.67□□□□□ -2.14 RIP-Chip
VPS35YJL154C GPI12P23797 304 aa1.67□□□□□ -2.14
VPS35YJL154C PBN1P25580 416 aa1.67□□□□□ -2.14
VPS35YJL154C ADE1P27616 306 aa1.67□□□□□ -2.14
VPS35YJL154C PEX3P28795 441 aa1.67□□□□□ -2.14
VPS35YJL154C ATP7P30902 174 aa1.67□□□□□ -2.14
VPS35YJL154C MRPL27P36526 146 aaPredicted RBP1.67□□□□□ -2.14
VPS35YJL154C OPY1P38271 328 aa1.67□□□□□ -2.14
VPS35YJL154C CDC40P40968 455 aaPredicted RBP1.67□□□□□ -2.14
VPS35YJL154C VMA10P48836 114 aaKnown RBP1.67□□□□□ -2.14
VPS35YJL154C SLX9P53251 210 aaPredicted RBP1.67□□□□□ -2.14
VPS35YJL154C CTS2Q06350 511 aa1.67□□□□□ -2.14
VPS35YJL154C ILV1P00927 576 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C POL30P15873 258 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C VPS1P21576 704 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C RPS5P26783 225 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C CWP1P28319 239 aa1.66□□□□□ -2.14
VPS35YJL154C ECT1P33412 323 aa1.66□□□□□ -2.14
VPS35YJL154C VPS51P36116 164 aa1.66□□□□□ -2.14
VPS35YJL154C MAL32P38158 584 aa1.66□□□□□ -2.14
VPS35YJL154C RCY1P39531 840 aa1.66□□□□□ -2.14
VPS35YJL154C THO1P40040 218 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C YIL054WP40524 105 aa1.66□□□□□ -2.14
VPS35YJL154C FLC3P53121 802 aa1.66□□□□□ -2.14
VPS35YJL154C MAL12P53341 584 aa1.66□□□□□ -2.14
VPS35YJL154C BNA7Q04066 261 aa1.66□□□□□ -2.14
VPS35YJL154C SPC24Q04477 213 aa1.66□□□□□ -2.14
VPS35YJL154C YDR222WQ04925 415 aa1.66□□□□□ -2.14
VPS35YJL154C MRX8Q05473 314 aa1.66□□□□□ -2.14
VPS35YJL154C BER1Q06688 274 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C YLR012CQ07927 99 aa1.66□□□□□ -2.14
VPS35YJL154C SDO1Q07953 250 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C BSC6Q08280 497 aa1.66□□□□□ -2.14
VPS35YJL154C APC9Q12107 265 aa1.66□□□□□ -2.14
VPS35YJL154C POM33Q12164 279 aa1.66□□□□□ -2.14
VPS35YJL154C FMP16Q12497 93 aa1.66□□□□□ -2.14
VPS35YJL154C RPL24AP04449 155 aaKnown RBP1.66□□□□□ -2.14
VPS35YJL154C MET16P18408 261 aaPredicted RBP1.66□□□□□ -2.14
VPS35YJL154C IFM1P25038 676 aa1.66□□□□□ -2.14
VPS35YJL154C MEI4P29467 408 aa1.66□□□□□ -2.14
VPS35YJL154C RFT1P38206 574 aaPredicted RBP1.66□□□□□ -2.14
VPS35YJL154C CHL4P38907 458 aa1.66□□□□□ -2.14
VPS35YJL154C SEO1P39709 593 aa1.66□□□□□ -2.14
VPS35YJL154C SNX4P47057 423 aa1.66□□□□□ -2.14
VPS35YJL154C KAP114P53067 1004 aa1.66□□□□□ -2.14
VPS35YJL154C SSU72P53538 206 aaPredicted RBP1.66□□□□□ -2.14
VPS35YJL154C NOP13P53883 403 aaKnown RBP RIP-Chip data1.66□□□□□ -2.14not detected
VPS35YJL154C INP1Q03694 420 aa1.66□□□□□ -2.14
VPS35YJL154C TSA2Q04120 196 aa1.66□□□□□ -2.14
VPS35YJL154C FAR10Q06001 478 aa1.66□□□□□ -2.14
VPS35YJL154C NCB2Q92317 146 aa1.66□□□□□ -2.14
VPS35YJL154C RPS24AP0CX31 135 aaKnown RBP1.65□□□□□ -2.14
VPS35YJL154C RPS24BP0CX32 135 aaKnown RBP1.65□□□□□ -2.14
VPS35YJL154C COQ1P18900 473 aa1.65□□□□□ -2.14
VPS35YJL154C IMP3P32899 183 aaPredicted RBP1.65□□□□□ -2.14
VPS35YJL154C CSE1P33307 960 aa1.65□□□□□ -2.14
VPS35YJL154C DBP7P36120 742 aaKnown RBP1.65□□□□□ -2.14
VPS35YJL154C FES1P38260 290 aa1.65□□□□□ -2.14
VPS35YJL154C SOP4P39543 234 aaPredicted RBP1.65□□□□□ -2.14
VPS35YJL154C SEC72P39742 193 aaKnown RBP1.65□□□□□ -2.14
VPS35YJL154C EDC3P39998 551 aaKnown RBP1.65□□□□□ -2.14
VPS35YJL154C RFC4P40339 323 aaKnown RBP1.65□□□□□ -2.14
VPS35YJL154C ICE2P40499 491 aa1.65□□□□□ -2.14
VPS35YJL154C YAR1P46683 200 aa1.65□□□□□ -2.14
VPS35YJL154C MRX5P47007 382 aa1.65□□□□□ -2.14
VPS35YJL154C LSM1P47017 172 aaKnown RBP1.65□□□□□ -2.14
VPS35YJL154C APS3P47064 194 aa1.65□□□□□ -2.14
VPS35YJL154C LIF1P53150 421 aa1.65□□□□□ -2.14
VPS35YJL154C FMP48P53233 369 aa1.65□□□□□ -2.14
VPS35YJL154C SED5Q01590 340 aa1.65□□□□□ -2.14
VPS35YJL154C MRS2Q01926 470 aa1.65□□□□□ -2.14
VPS35YJL154C ASR1Q06834 288 aa1.65□□□□□ -2.14
VPS35YJL154C MSH5Q12175 901 aa1.65□□□□□ -2.14
VPS35YJL154C YPR064WQ12492 139 aa1.65□□□□□ -2.14
VPS35YJL154C BI3Q9ZZW7 517 aa1.65□□□□□ -2.14
VPS35YJL154C MATALPHA1P0CY06 175 aa1.65□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 15.1 ms