RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	CDC50	P25656	391 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	MRPL4	P36517	319 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	RIB5	P38145	238 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	MAL32	P38158	584 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	EHT1	P38295	451 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	PHO90	P39535	881 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	ADO1	P47143	340 aa	Known RBP	11.23	□□□□□ -0.61
BDF1	YLR399C	VPS62	P53285	467 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	MAL12	P53341	584 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	APJ1	P53940	528 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	ACT1	P60010	375 aa	Known RBP	11.23	□□□□□ -0.61
BDF1	YLR399C	SKO1	Q02100	647 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	CUE4	Q04201	117 aa	Predicted RBP	11.23	□□□□□ -0.61
BDF1	YLR399C	NDE2	Q07500	545 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	SET6	Q12529	373 aa		11.23	□□□□□ -0.61
BDF1	YLR399C	EPT1	P22140	391 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	POT1	P27796	417 aa	Known RBP RIP-Chip data	11.22	□□□□□ -0.61	not detected
BDF1	YLR399C	FUN19	P28003	413 aa	Predicted RBP	11.22	□□□□□ -0.61
BDF1	YLR399C	SGE1	P33335	543 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	FLX1	P40464	311 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	YIL108W	P40483	696 aa	Known RBP	11.22	□□□□□ -0.61
BDF1	YLR399C	APQ12	P40532	138 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	CIN2	P46670	268 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	YIF1	P53845	314 aa	Known RBP	11.22	□□□□□ -0.61
BDF1	YLR399C	YMR206W	Q03695	313 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	MRX9	Q07349	420 aa	Known RBP	11.22	□□□□□ -0.61
BDF1	YLR399C	YPR064W	Q12492	139 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	ODC2	Q99297	307 aa		11.22	□□□□□ -0.61
BDF1	YLR399C	SCEI	P03882	235 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	CPA1	P07258	411 aa	Known RBP	11.21	□□□□□ -0.61
BDF1	YLR399C	SPS4	P09937	338 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	NFS1	P25374	497 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	TRR2	P38816	342 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	UBP8	P50102	471 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	TAZ1	Q06510	381 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	YLR146W-A	Q2V2P1	62 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	YPR014C	Q6B0W2	109 aa		11.21	□□□□□ -0.61
BDF1	YLR399C	PTP1	P25044	335 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	NEM1	P38757	446 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	GPI16	P38875	610 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	EMC4	P53073	190 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	CDH1	P53197	566 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	YGR012W	P53206	393 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	BSP1	Q06604	576 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	HDA2	Q06629	674 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	YDL177C	Q12257	170 aa		11.21	□□□□□ -0.62
BDF1	YLR399C	SCL1	P21243	252 aa	Known RBP	11.2	□□□□□ -0.62
BDF1	YLR399C	PBN1	P25580	416 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	YCR101C	P25607	182 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	HMT1	P38074	348 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	YER158C	P40095	573 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	YNL195C	P40168	261 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	HXT14	P42833	540 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	RAD17	P48581	401 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	UBC9	P50623	157 aa	Predicted RBP	11.2	□□□□□ -0.62
BDF1	YLR399C	YAP1802	P53309	568 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	GIM3	P53900	129 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	YOR114W	Q12219	294 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	TRP4	P07285	380 aa	Predicted RBP	11.2	□□□□□ -0.62
BDF1	YLR399C	MRPL16	P38064	232 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	ECM34	P38728	170 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	YPT35	P38815	214 aa	Known RBP	11.2	□□□□□ -0.62
BDF1	YLR399C	FAA3	P39002	694 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	SAM37	P50110	327 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	RTK1	Q12100	620 aa	Predicted RBP	11.2	□□□□□ -0.62
BDF1	YLR399C	AHC1	Q12433	566 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	AGC1	Q12482	902 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	COX19	Q3E731	98 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	YIL134C-A	Q45U18	67 aa		11.2	□□□□□ -0.62
BDF1	YLR399C	CDC28	P00546	298 aa	Known RBP	11.19	□□□□□ -0.62
BDF1	YLR399C	SNF5	P18480	905 aa		11.19	□□□□□ -0.62
BDF1	YLR399C	SEC62	P21825	274 aa		11.19	□□□□□ -0.62
BDF1	YLR399C	PPZ2	P33329	710 aa		11.19	□□□□□ -0.62
BDF1	YLR399C	IML3	P38265	245 aa		11.19	□□□□□ -0.62
BDF1	YLR399C	PAU15	P40585	124 aa		11.19	□□□□□ -0.62
BDF1	YLR399C	SFH5	P47008	294 aa		11.19	□□□□□ -0.62
BDF1	YLR399C	MPA43	P53583	542 aa	Predicted RBP	11.19	□□□□□ -0.62
BDF1	YLR399C	ELA1	P53861	379 aa	Predicted RBP	11.19	□□□□□ -0.62
BDF1	YLR399C	YMR310C	Q04867	317 aa	Predicted RBP	11.19	□□□□□ -0.62
BDF1	YLR399C	RTN1	Q04947	295 aa	Known RBP	11.19	□□□□□ -0.62
BDF1	YLR399C	YPC1	P38298	316 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	GGC1	P38988	300 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	SMB1	P40018	196 aa	Known RBP	11.18	□□□□□ -0.62
BDF1	YLR399C	CYT2	Q00873	224 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	ADD37	Q03233	198 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	NAT4	Q04751	285 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	REX4	Q08237	289 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	ADH7	P25377	361 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	MRPL27	P36526	146 aa	Predicted RBP	11.18	□□□□□ -0.62
BDF1	YLR399C	SHG1	P38337	142 aa		11.18	□□□□□ -0.62
BDF1	YLR399C	YPT31	P38555	223 aa	Known RBP	11.18	□□□□□ -0.62
BDF1	YLR399C	FUR4	P05316	633 aa	Known RBP	11.17	□□□□□ -0.62
BDF1	YLR399C	MGE1	P38523	228 aa		11.17	□□□□□ -0.62
BDF1	YLR399C	MXR1	P40029	184 aa		11.17	□□□□□ -0.62
BDF1	YLR399C	NIF3	P53081	288 aa		11.17	□□□□□ -0.62
BDF1	YLR399C	APM1	Q00776	475 aa	Predicted RBP	11.17	□□□□□ -0.62
BDF1	YLR399C	KKQ8	P36004	724 aa		11.16	□□□□□ -0.62
BDF1	YLR399C	OMA1	P36163	345 aa		11.16	□□□□□ -0.62
BDF1	YLR399C	MRPL15	P36523	253 aa		11.16	□□□□□ -0.62
BDF1	YLR399C	SDS24	P38314	527 aa		11.16	□□□□□ -0.62

Retrieved 100 of 5,963 RNA–protein pairs in 34.7 ms