RNA–Protein interactions for RNA: YER012W

PRE1, Transcript of Beta 4 subunit of the 20S proteasome, yeastyeast

Gene PRE1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE1YER012W YLR053CQ12026 108 aa2.4□□□□□ -2.03
PRE1YER012W MDM32Q12171 622 aa2.4□□□□□ -2.03
PRE1YER012W RUP1Q12242 671 aa2.4□□□□□ -2.03
PRE1YER012W RRP42Q12277 265 aaPredicted RBP2.4□□□□□ -2.03
PRE1YER012W RNH203Q12338 110 aa2.4□□□□□ -2.03
PRE1YER012W SKS1Q12505 502 aa2.4□□□□□ -2.03
PRE1YER012W MSS116P15424 664 aaKnown RBP2.39□□□□□ -2.03
PRE1YER012W GPI12P23797 304 aa2.39□□□□□ -2.03
PRE1YER012W YCR090CP25654 182 aaKnown RBP2.39□□□□□ -2.03
PRE1YER012W PHA2P32452 334 aa2.39□□□□□ -2.03
PRE1YER012W MRPS9P38120 278 aa2.39□□□□□ -2.03
PRE1YER012W CHK1P38147 527 aa2.39□□□□□ -2.03
PRE1YER012W SPP381P38282 291 aaPredicted RBP2.39□□□□□ -2.03
PRE1YER012W LSM4P40070 187 aaKnown RBP2.39□□□□□ -2.03
PRE1YER012W ICE2P40499 491 aa2.39□□□□□ -2.03
PRE1YER012W GCD14P46959 383 aaPredicted RBP2.39□□□□□ -2.03
PRE1YER012W RAD17P48581 401 aa2.39□□□□□ -2.03
PRE1YER012W PMT5P52867 743 aa2.39□□□□□ -2.03
PRE1YER012W YGR067CP53243 804 aa2.39□□□□□ -2.03
PRE1YER012W TPC1P53257 314 aa2.39□□□□□ -2.03
PRE1YER012W FAR10Q06001 478 aa2.39□□□□□ -2.03
PRE1YER012W SEI1Q06058 285 aa2.39□□□□□ -2.03
PRE1YER012W BOP2Q06150 570 aa2.39□□□□□ -2.03
PRE1YER012W RRP9Q06506 573 aaKnown RBP2.39□□□□□ -2.03
PRE1YER012W YPR091CQ06833 770 aa2.39□□□□□ -2.03
PRE1YER012W PML1Q07930 204 aaPredicted RBP2.39□□□□□ -2.03
PRE1YER012W YPS3Q12303 508 aa2.39□□□□□ -2.03
PRE1YER012W PRP46Q12417 451 aaPredicted RBP2.39□□□□□ -2.03
PRE1YER012W ADH1P00330 348 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W CBP2P03874 630 aaPredicted RBP2.38□□□□□ -2.03
PRE1YER012W COS2P0CX12 379 aa2.38□□□□□ -2.03
PRE1YER012W COS3P0CX13 379 aa2.38□□□□□ -2.03
PRE1YER012W RPO26P20435 155 aa2.38□□□□□ -2.03
PRE1YER012W GRR1P24814 1151 aa2.38□□□□□ -2.03
PRE1YER012W SLM5P25345 492 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W BPH1P25356 2167 aa2.38□□□□□ -2.03
PRE1YER012W YCR102CP25608 368 aa2.38□□□□□ -2.03
PRE1YER012W PMT2P31382 759 aa2.38□□□□□ -2.03
PRE1YER012W HSP150P32478 413 aa2.38□□□□□ -2.03
PRE1YER012W KRE6P32486 720 aa2.38□□□□□ -2.03
PRE1YER012W UBC6P33296 250 aaPredicted RBP2.38□□□□□ -2.03
PRE1YER012W BMT2P38278 337 aa2.38□□□□□ -2.03
PRE1YER012W YHB1P39676 399 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W AIM2P39721 246 aa2.38□□□□□ -2.03
PRE1YER012W MEP1P40260 492 aa2.38□□□□□ -2.03
PRE1YER012W EGT2P42835 1041 aa2.38□□□□□ -2.03
PRE1YER012W COS4P43542 379 aa2.38□□□□□ -2.03
PRE1YER012W CRH1P53301 507 aa2.38□□□□□ -2.03
PRE1YER012W MKC7P53379 596 aa2.38□□□□□ -2.03
PRE1YER012W YNL260CP53846 198 aa2.38□□□□□ -2.03
PRE1YER012W IGO1P53897 168 aa2.38□□□□□ -2.03
PRE1YER012W PRO2P54885 456 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W LSM3P57743 89 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W YDR541CQ03049 344 aa2.38□□□□□ -2.03
PRE1YER012W MMT1Q03218 510 aa2.38□□□□□ -2.03
PRE1YER012W INP1Q03694 420 aa2.38□□□□□ -2.03
PRE1YER012W HPT1Q04178 221 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W YDR124WQ04608 324 aa2.38□□□□□ -2.03
PRE1YER012W SEC10Q06245 871 aa2.38□□□□□ -2.03
PRE1YER012W RIO1Q12196 484 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W RUD3Q12234 484 aaKnown RBP2.38□□□□□ -2.03
PRE1YER012W JID1Q12350 301 aa2.38□□□□□ -2.03
PRE1YER012W JLP1Q12358 412 aa2.38□□□□□ -2.03
PRE1YER012W PRM7Q12459 698 aa2.38□□□□□ -2.03
PRE1YER012W RPL6BP05739 176 aaKnown RBP2.37□□□□□ -2.03
PRE1YER012W PRB1P09232 635 aa2.37□□□□□ -2.03
PRE1YER012W MSI1P13712 422 aa2.37□□□□□ -2.03
PRE1YER012W BUB2P26448 306 aaPredicted RBP2.37□□□□□ -2.03
PRE1YER012W RPS1AP33442 255 aaKnown RBP2.37□□□□□ -2.03
PRE1YER012W DAD2P36162 133 aa2.37□□□□□ -2.03
PRE1YER012W FMP32P43557 207 aa2.37□□□□□ -2.03
PRE1YER012W YFR054CP43622 192 aa2.37□□□□□ -2.03
PRE1YER012W YFR057WP43625 151 aa2.37□□□□□ -2.03
PRE1YER012W RPE1P46969 238 aa2.37□□□□□ -2.03
PRE1YER012W SFH5P47008 294 aa2.37□□□□□ -2.03
PRE1YER012W BNS1P50084 137 aa2.37□□□□□ -2.03
PRE1YER012W ATP22P50273 684 aaPredicted RBP2.37□□□□□ -2.03
PRE1YER012W EFM5P53200 248 aaKnown RBP2.37□□□□□ -2.03
PRE1YER012W MAL13P53338 473 aa2.37□□□□□ -2.03
PRE1YER012W RPL6AQ02326 176 aaKnown RBP2.37□□□□□ -2.03
PRE1YER012W SKI8Q02793 397 aaPredicted RBP2.37□□□□□ -2.03
PRE1YER012W URC2Q04411 772 aa2.37□□□□□ -2.03
PRE1YER012W IPK1Q06667 281 aa2.37□□□□□ -2.03
PRE1YER012W YOL131WQ08270 108 aa2.37□□□□□ -2.03
PRE1YER012W YRA1Q12159 226 aaKnown RBP2.37□□□□□ -2.03
PRE1YER012W YOR342CQ12182 319 aa2.37□□□□□ -2.03
PRE1YER012W RFM1Q12192 310 aa2.37□□□□□ -2.03
PRE1YER012W TFB5Q3E7C1 72 aaPredicted RBP2.37□□□□□ -2.03
PRE1YER012W YCL012CQ8J0M4 134 aa2.37□□□□□ -2.03
PRE1YER012W FLO9P39712 1322 aa2.37□□□□□ -2.03
PRE1YER012W YPR096CO13587 100 aa2.36□□□□□ -2.03
PRE1YER012W RPL12AP0CX53 165 aaKnown RBP2.36□□□□□ -2.03
PRE1YER012W RPL12BP0CX54 165 aa2.36□□□□□ -2.03
PRE1YER012W SPS100P13130 326 aa2.36□□□□□ -2.03
PRE1YER012W RPB4P20433 221 aaPredicted RBP2.36□□□□□ -2.03
PRE1YER012W SEC17P32602 292 aa2.36□□□□□ -2.03
PRE1YER012W SPO23P33757 523 aa2.36□□□□□ -2.03
PRE1YER012W GRE3P38715 327 aaKnown RBP RIP-Chip data2.36□□□□□ -2.03not detected
PRE1YER012W PRP39P39682 629 aaKnown RBP2.36□□□□□ -2.03
PRE1YER012W YER034WP40022 185 aaKnown RBP2.36□□□□□ -2.03
Retrieved 100 of 5,963 RNA–protein pairs in 64.7 ms