RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C ECL1P48235 211 aa3.74□□□□□ -1.81
CDC9YDL164C NUP57P48837 541 aa3.74□□□□□ -1.81
CDC9YDL164C IRC15Q02733 499 aa3.74□□□□□ -1.81
CDC9YDL164C YDR248CQ03786 193 aa3.74□□□□□ -1.81
CDC9YDL164C RIF2Q06208 395 aa3.74□□□□□ -1.81
CDC9YDL164C AIM39Q08223 395 aa3.74□□□□□ -1.81
CDC9YDL164C NOT5Q12514 560 aaPredicted RBP3.74□□□□□ -1.81
CDC9YDL164C YCR024C-BQ3E7Z8 88 aa3.74□□□□□ -1.81
CDC9YDL164C ESC1Q03661 1658 aaKnown RBP3.74□□□□□ -1.81
CDC9YDL164C PDR15Q04182 1529 aaKnown RBP3.73□□□□□ -1.81
CDC9YDL164C BI2P03873 423 aa3.73□□□□□ -1.81
CDC9YDL164C QCR2P07257 368 aa3.73□□□□□ -1.81
CDC9YDL164C CTA1P15202 515 aa3.73□□□□□ -1.81
CDC9YDL164C YCR025CP25352 136 aa3.73□□□□□ -1.81
CDC9YDL164C ITR2P30606 609 aa3.73□□□□□ -1.81
CDC9YDL164C MUD1P32605 298 aaKnown RBP3.73□□□□□ -1.81
CDC9YDL164C ELM1P32801 640 aa3.73□□□□□ -1.81
CDC9YDL164C YIL169CP40442 995 aa3.73□□□□□ -1.81
CDC9YDL164C IRC18P47056 224 aa3.73□□□□□ -1.81
CDC9YDL164C PEX12Q04370 399 aa3.73□□□□□ -1.81
CDC9YDL164C YMR027WQ04371 470 aa3.73□□□□□ -1.81
CDC9YDL164C RSA1Q08932 381 aa3.73□□□□□ -1.81
CDC9YDL164C PER33Q12144 273 aa3.73□□□□□ -1.81
CDC9YDL164C YDR018CQ12185 396 aa3.73□□□□□ -1.81
CDC9YDL164C ARP6Q12509 438 aa3.73□□□□□ -1.81
CDC9YDL164C FOL3Q12676 427 aaPredicted RBP3.73□□□□□ -1.81
CDC9YDL164C BCY1P07278 416 aaKnown RBP3.73□□□□□ -1.81
CDC9YDL164C CAT2P32796 670 aaKnown RBP3.73□□□□□ -1.81
CDC9YDL164C GPX1P36014 167 aa3.73□□□□□ -1.81
CDC9YDL164C POP7P38291 140 aa3.73□□□□□ -1.81
CDC9YDL164C ECM11Q04110 302 aa3.73□□□□□ -1.81
CDC9YDL164C YDL144CQ07589 356 aa3.73□□□□□ -1.81
CDC9YDL164C RIO1Q12196 484 aaKnown RBP3.73□□□□□ -1.81
CDC9YDL164C ICT1Q12385 394 aa3.73□□□□□ -1.81
CDC9YDL164C TRM3Q07527 1436 aa3.73□□□□□ -1.81
CDC9YDL164C RPL42AP0CX27 106 aaKnown RBP3.72□□□□□ -1.81
CDC9YDL164C RPL42BP0CX28 106 aaKnown RBP3.72□□□□□ -1.81
CDC9YDL164C YIL029CP40538 142 aa3.72□□□□□ -1.81
CDC9YDL164C MDV1P47025 714 aa3.72□□□□□ -1.81
CDC9YDL164C ASI3P53983 676 aa3.72□□□□□ -1.81
CDC9YDL164C TDA1Q03533 586 aa3.72□□□□□ -1.81
CDC9YDL164C YHC1Q05900 231 aaKnown RBP3.72□□□□□ -1.81
CDC9YDL164C YLR446WQ06204 433 aa3.72□□□□□ -1.81
CDC9YDL164C YLR126CQ12288 251 aa3.72□□□□□ -1.81
CDC9YDL164C YPL119C-AQ3E751 87 aa3.72□□□□□ -1.81
CDC9YDL164C YAR066WP0CX18 203 aa3.72□□□□□ -1.81
CDC9YDL164C YHR214WP0CX19 203 aa3.72□□□□□ -1.81
CDC9YDL164C MRS3P10566 314 aa3.72□□□□□ -1.81
CDC9YDL164C SAM2P19358 384 aaKnown RBP3.72□□□□□ -1.81
CDC9YDL164C PPH21P23594 369 aa3.72□□□□□ -1.81
CDC9YDL164C HCM1P25364 564 aa3.72□□□□□ -1.81
CDC9YDL164C TRR1P29509 319 aaKnown RBP3.72□□□□□ -1.81
CDC9YDL164C AGA1P32323 725 aa3.72□□□□□ -1.81
CDC9YDL164C DER1P38307 211 aa3.72□□□□□ -1.81
CDC9YDL164C YER076CP40049 302 aa3.72□□□□□ -1.81
CDC9YDL164C COX15P40086 486 aa3.72□□□□□ -1.81
CDC9YDL164C VRG4P40107 337 aa3.72□□□□□ -1.81
CDC9YDL164C MMS2P53152 137 aa3.72□□□□□ -1.81
CDC9YDL164C MSA1Q08471 629 aa3.72□□□□□ -1.81
CDC9YDL164C YPR064WQ12492 139 aa3.72□□□□□ -1.81
CDC9YDL164C CYC3P06182 269 aa3.71□□□□□ -1.82
CDC9YDL164C SEN2P16658 377 aa3.71□□□□□ -1.82
CDC9YDL164C MDH3P32419 343 aaKnown RBP RIP-Chip data3.71□□□□□ -1.82not detected
CDC9YDL164C SRP102P36057 244 aaPredicted RBP3.71□□□□□ -1.82
CDC9YDL164C FZO1P38297 855 aa3.71□□□□□ -1.82
CDC9YDL164C CHL4P38907 458 aa3.71□□□□□ -1.82
CDC9YDL164C SEO1P39709 593 aa3.71□□□□□ -1.82
CDC9YDL164C PRP24P49960 444 aaKnown RBP3.71□□□□□ -1.82
CDC9YDL164C YGL034CP53186 121 aa3.71□□□□□ -1.82
CDC9YDL164C SDC1Q03323 175 aa3.71□□□□□ -1.82
CDC9YDL164C SEI1Q06058 285 aa3.71□□□□□ -1.82
CDC9YDL164C NOC4Q06512 552 aaPredicted RBP3.71□□□□□ -1.82
CDC9YDL164C MRX9Q07349 420 aaKnown RBP3.71□□□□□ -1.82
CDC9YDL164C RFM1Q12192 310 aa3.71□□□□□ -1.82
CDC9YDL164C TPO4Q12256 659 aa3.71□□□□□ -1.82
CDC9YDL164C AGC1Q12482 902 aa3.71□□□□□ -1.82
CDC9YDL164C PRM4Q12498 284 aa3.71□□□□□ -1.82
CDC9YDL164C DNF1P32660 1571 aa3.71□□□□□ -1.82
CDC9YDL164C TY3B-GQ99315 1547 aa3.71□□□□□ -1.82
CDC9YDL164C VPS15P22219 1454 aa3.71□□□□□ -1.82
CDC9YDL164C NUP157P40064 1391 aaKnown RBP3.71□□□□□ -1.82
CDC9YDL164C RPL28P02406 149 aaKnown RBP3.7□□□□□ -1.82
CDC9YDL164C DBF2P22204 572 aa3.7□□□□□ -1.82
CDC9YDL164C IFM1P25038 676 aa3.7□□□□□ -1.82
CDC9YDL164C MBA1P38300 278 aa3.7□□□□□ -1.82
CDC9YDL164C EDC3P39998 551 aaKnown RBP3.7□□□□□ -1.82
CDC9YDL164C SWC4P53201 476 aa3.7□□□□□ -1.82
CDC9YDL164C PDR17P53844 350 aa3.7□□□□□ -1.82
CDC9YDL164C TDA7P53882 636 aaPredicted RBP3.7□□□□□ -1.82
CDC9YDL164C DPP1Q05521 289 aa3.7□□□□□ -1.82
CDC9YDL164C GRX8Q05926 109 aa3.7□□□□□ -1.82
CDC9YDL164C ORM2Q06144 216 aa3.7□□□□□ -1.82
CDC9YDL164C MUM3Q08750 479 aa3.7□□□□□ -1.82
CDC9YDL164C MRX4Q12467 430 aa3.7□□□□□ -1.82
CDC9YDL164C ARO7P32178 256 aa3.7□□□□□ -1.82
CDC9YDL164C MRPL28P36527 147 aa3.7□□□□□ -1.82
CDC9YDL164C TRM5P38793 499 aa3.7□□□□□ -1.82
CDC9YDL164C NDT80P38830 627 aa3.7□□□□□ -1.82
CDC9YDL164C PRM10P42946 383 aa3.7□□□□□ -1.82
CDC9YDL164C YJR111CP47148 283 aaKnown RBP3.7□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms