RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	YGL185C	P53100	379 aa		4.62	□□□□□ -1.67
CDC4	YFL009W	VPS73	P53142	486 aa	Known RBP	4.62	□□□□□ -1.67
CDC4	YFL009W	MPA43	P53583	542 aa	Predicted RBP	4.62	□□□□□ -1.67
CDC4	YFL009W	DUS1	P53759	423 aa	Known RBP	4.62	□□□□□ -1.67
CDC4	YFL009W	FMP41	P53889	259 aa	Known RBP	4.62	□□□□□ -1.67
CDC4	YFL009W	CTL1	Q03220	320 aa	Known RBP	4.62	□□□□□ -1.67
CDC4	YFL009W	VBA1	Q04301	562 aa		4.62	□□□□□ -1.67
CDC4	YFL009W	GSF2	Q04697	403 aa	Known RBP	4.62	□□□□□ -1.67
CDC4	YFL009W	YOL114C	Q12322	202 aa		4.62	□□□□□ -1.67
CDC4	YFL009W	EAF3	Q12432	401 aa		4.62	□□□□□ -1.67
CDC4	YFL009W	YLR422W	Q06409	1932 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	TMA19	P35691	167 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	ASC1	P38011	319 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	REG2	P38232	338 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	YHR035W	P38769	630 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	ELO3	P40319	345 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	PAN6	P40459	309 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	GLC8	P41818	229 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	HXT14	P42833	540 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	BNA2	P47125	453 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	AIM25	P47140	327 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	YGR012W	P53206	393 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	GPI15	P53961	229 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	TPS1	Q00764	495 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	SPP2	Q02521	185 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	GIP3	Q03016	1276 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	VBA4	Q04602	768 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	ASM4	Q05166	528 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	GRC3	Q07845	632 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	CSM4	Q08955	156 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	RPP2A	P05319	106 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	ADH3	P07246	375 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	RPB3	P16370	318 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	RFA1	P22336	621 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	PRE7	P23724	241 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	EHD3	P28817	500 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	NRP1	P32770	719 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
CDC4	YFL009W	POL12	P38121	705 aa	Predicted RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	POA1	P38218	177 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	YBR053C	P38235	358 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	SHG1	P38337	142 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	SSH1	P38353	490 aa	Known RBP	4.61	□□□□□ -1.67
CDC4	YFL009W	ACA1	P39970	489 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	FMC1	P40491	155 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	PAU15	P40585	124 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	NUP57	P48837	541 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	CDC14	Q00684	551 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	NUP100	Q02629	959 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	IRC15	Q02733	499 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	MSC1	Q03104	513 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	TVP18	Q04767	167 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	FDH1	Q08911	376 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	RAD28	Q12021	506 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	ICT1	Q12385	394 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	YOP1	Q12402	180 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	Q0010	Q9ZZX9	128 aa		4.61	□□□□□ -1.67
CDC4	YFL009W	DIF1	O13577	133 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	URA6	P15700	204 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SEC62	P21825	274 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	PBN1	P25580	416 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	YIH1	P25637	258 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	AHC2	P25649	128 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	COQ3	P27680	312 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	YEF1	P32622	495 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SUR1	P33300	382 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	MRPL28	P36527	147 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	PHO90	P39535	881 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	VMA21	P41806	77 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	PFS2	P42841	465 aa	Known RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	TIS11	P47977	285 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SAE3	P89114	91 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	AAT1	Q01802	451 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	MRP51	Q02950	344 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	MET31	Q03081	177 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SPC19	Q03954	165 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	RFU1	Q08003	200 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	RDI1	Q12434	202 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	YPR014C	Q6B0W2	109 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SRN2	Q99176	213 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SGA1	P08019	549 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	TKL1	P23254	680 aa	Known RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	BUD5	P25300	642 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	PRE4	P30657	266 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	MSK1	P32048	576 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	MRP20	P32387	263 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	TSA1	P34760	196 aa	Known RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	YHR122W	P38829	231 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	CHS7	P38843	316 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	IME4	P41833	600 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	PAM16	P42949	149 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	STE24	P47154	453 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SLX9	P53251	210 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	SHY1	P53266	389 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	SSU72	P53538	206 aa	Predicted RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	BUD17	P53727	317 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	RHO3	Q00245	231 aa	Known RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	FIT1	Q04433	528 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	HBT1	Q07653	1046 aa	Known RBP	4.6	□□□□□ -1.67
CDC4	YFL009W	RDR1	Q08904	546 aa		4.6	□□□□□ -1.67
CDC4	YFL009W	RTK1	Q12100	620 aa	Predicted RBP	4.6	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 132.9 ms