RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	ZRT3	P34240	503 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	DBP7	P36120	742 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	MBA1	P38300	278 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	BIG1	P38813	335 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	NPT1	P39683	429 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	NBP1	P52919	319 aa	Predicted RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	TIM21	P53220	239 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	ALG11	P53954	548 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	RNY1	Q02933	434 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	ECM19	Q06011	112 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	YPL278C	Q08990	100 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	VIK1	Q12045	647 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	YOR029W	Q12243	111 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	TPI1	P00942	248 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	RPS3	P05750	240 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	RAD3	P06839	778 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	VPS1	P21576	704 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	ATG15	P25641	520 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	ARO4	P32449	370 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	ECM34	P38728	170 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	TAD2	P47058	250 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	YML018C	Q03730	393 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	SDO1	Q07953	250 aa	Known RBP	1.75	□□□□□ -2.13
NCL1	YBL024W	MED4	Q12343	284 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	TRM10	Q12400	293 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	ATG31	Q12421	196 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	YAL063C-A	Q3E791	96 aa		1.75	□□□□□ -2.13
NCL1	YBL024W	FLO11	P08640	1367 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	HIS1	P00498	297 aa	Known RBP	1.74	□□□□□ -2.13
NCL1	YBL024W	DAL82	P21705	255 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	RPB9	P27999	122 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	IME2	P32581	645 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	PRS4	P38063	326 aa	Predicted RBP	1.74	□□□□□ -2.13
NCL1	YBL024W	SPT8	P38915	602 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	SEO1	P39709	593 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	DDI1	P40087	428 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	AVT7	P40501	490 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	SER33	P40510	469 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	MNT4	P53745	580 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	SRL4	Q03085	281 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	GRX3	Q03835	250 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	UTP15	Q04305	513 aa	Known RBP	1.74	□□□□□ -2.13
NCL1	YBL024W	ADH6	Q04894	360 aa	Known RBP	1.74	□□□□□ -2.13
NCL1	YBL024W	TAF9	Q05027	157 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	BOP2	Q06150	570 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	PIN3	Q06449	215 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	MCH1	Q07376	486 aa		1.74	□□□□□ -2.13
NCL1	YBL024W	DFM1	Q12743	341 aa	Known RBP	1.74	□□□□□ -2.13
NCL1	YBL024W	SOD1	P00445	154 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	COX10	P21592	462 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	PRS1	P32895	427 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	MRP21	P38175	177 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	TRM44	Q02648	567 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	PET117	Q02771	107 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	YPL113C	Q02961	396 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	VPS60	Q03390	229 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	CTR3	Q06686	241 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	PER33	Q12144	273 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	MRP1	P10662	321 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	CDC42	P19073	191 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	MRPL3	P36516	390 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	PRS2	P38620	318 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	YIL012W	P40551	113 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	YFL064C	P43540	174 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	LIA1	P47120	325 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	NBP35	P52920	328 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	MAL13	P53338	473 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	ACT1	P60010	375 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	SEC10	Q06245	871 aa		1.73	□□□□□ -2.13
NCL1	YBL024W	CFT1	Q06632	1357 aa	Known RBP	1.73	□□□□□ -2.13
NCL1	YBL024W	IMP1	P28627	190 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	VPH2	P32341	215 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	AIM29	P36154	155 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	SEN34	P39707	275 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	YER184C	P39961	794 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	ASG7	P46993	209 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	PRP24	P49960	444 aa	Known RBP	1.72	□□□□□ -2.13
NCL1	YBL024W	YGL118C	P53132	145 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	SWS2	P53937	143 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	DIB1	Q06819	143 aa	Predicted RBP	1.72	□□□□□ -2.13
NCL1	YBL024W	MSH5	Q12175	901 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	SME1	Q12330	94 aa	Predicted RBP	1.72	□□□□□ -2.13
NCL1	YBL024W	AUS1	Q08409	1394 aa		1.72	□□□□□ -2.13
NCL1	YBL024W	YAL064W-B	O13512	126 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	RPS19A	P07280	144 aa	Known RBP	1.71	□□□□□ -2.13
NCL1	YBL024W	RPS19B	P07281	144 aa	Predicted RBP	1.71	□□□□□ -2.13
NCL1	YBL024W	KRE29	P40026	464 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	FMC1	P40491	155 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	RPL10	P41805	221 aa	Known RBP	1.71	□□□□□ -2.13
NCL1	YBL024W	UFE1	P41834	346 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	MIC19	P43594	170 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	GLG2	P47011	380 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	FMP41	P53889	259 aa	Known RBP	1.71	□□□□□ -2.13
NCL1	YBL024W	MRS2	Q01926	470 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	SDC1	Q03323	175 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	EBS1	Q03466	884 aa	Known RBP	1.71	□□□□□ -2.13
NCL1	YBL024W	PAM18	Q07914	168 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	YOS9	Q99220	542 aa		1.71	□□□□□ -2.13
NCL1	YBL024W	YCR016W	P25617	290 aa	Known RBP	1.71	□□□□□ -2.14
NCL1	YBL024W	PEX3	P28795	441 aa		1.71	□□□□□ -2.14

Retrieved 100 of 5,963 RNA–protein pairs in 138.7 ms