RNA–Protein interactions for RNA: YKR098C

UBP11, Transcript of Ubiquitin-specific protease, yeastyeast

Gene UBP11, Length 2,154 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP11YKR098C LIA1P47120 325 aaKnown RBP1.85□□□□□ -2.11
UBP11YKR098C SDT1P53078 280 aa1.85□□□□□ -2.11
UBP11YKR098C SDS23P53172 527 aa1.85□□□□□ -2.11
UBP11YKR098C NRM1P53718 249 aa1.85□□□□□ -2.11
UBP11YKR098C TPS1Q00764 495 aaKnown RBP1.85□□□□□ -2.11
UBP11YKR098C MRX11Q03079 207 aa1.85□□□□□ -2.11
UBP11YKR098C GMC1Q04399 608 aa1.85□□□□□ -2.11
UBP11YKR098C RLP24Q07915 199 aaKnown RBP1.85□□□□□ -2.11
UBP11YKR098C BSC6Q08280 497 aa1.85□□□□□ -2.11
UBP11YKR098C YPL245WQ12179 454 aaKnown RBP1.85□□□□□ -2.11
UBP11YKR098C YBL111CQ3E7Y5 667 aa1.85□□□□□ -2.11
UBP11YKR098C LAG2Q92325 660 aa1.85□□□□□ -2.11
UBP11YKR098C COX4P04037 155 aa1.84□□□□□ -2.11
UBP11YKR098C RAD3P06839 778 aa1.84□□□□□ -2.11
UBP11YKR098C IFM1P25038 676 aa1.84□□□□□ -2.11
UBP11YKR098C CYM1P32898 989 aa1.84□□□□□ -2.11
UBP11YKR098C MRPL6P32904 214 aa1.84□□□□□ -2.11
UBP11YKR098C YKL187CP34231 750 aa1.84□□□□□ -2.11
UBP11YKR098C SKI2P35207 1287 aaKnown RBP RIP-Chip data1.84□□□□□ -2.11not detected
UBP11YKR098C GPX1P36014 167 aa1.84□□□□□ -2.11
UBP11YKR098C YBR062CP38239 180 aa1.84□□□□□ -2.11
UBP11YKR098C VAB2P40003 282 aa1.84□□□□□ -2.11
UBP11YKR098C YIA6P40556 373 aa1.84□□□□□ -2.11
UBP11YKR098C BNA6P43619 295 aa1.84□□□□□ -2.11
UBP11YKR098C TIM21P53220 239 aa1.84□□□□□ -2.11
UBP11YKR098C PET117Q02771 107 aa1.84□□□□□ -2.11
UBP11YKR098C PEX30Q06169 523 aa1.84□□□□□ -2.11
UBP11YKR098C ARV1Q06541 321 aa1.84□□□□□ -2.11
UBP11YKR098C MHR1Q06630 226 aa1.84□□□□□ -2.11
UBP11YKR098C MMT2Q08970 484 aa1.84□□□□□ -2.11
UBP11YKR098C SRO7Q12038 1033 aa1.84□□□□□ -2.11
UBP11YKR098C ATG31Q12421 196 aa1.84□□□□□ -2.11
UBP11YKR098C POF1P25576 258 aa1.83□□□□□ -2.12
UBP11YKR098C ARO4P32449 370 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C CSE1P33307 960 aa1.83□□□□□ -2.12
UBP11YKR098C GPI18P38211 433 aa1.83□□□□□ -2.12
UBP11YKR098C HSM3P38348 480 aa1.83□□□□□ -2.12
UBP11YKR098C EFM1P38732 585 aa1.83□□□□□ -2.12
UBP11YKR098C BIG1P38813 335 aa1.83□□□□□ -2.12
UBP11YKR098C TAD2P47058 250 aa1.83□□□□□ -2.12
UBP11YKR098C TPN1P53099 579 aa1.83□□□□□ -2.12
UBP11YKR098C YGL039WP53183 348 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C ALG11P53954 548 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C KTR6P54070 446 aa1.83□□□□□ -2.12
UBP11YKR098C OST6Q03723 332 aa1.83□□□□□ -2.12
UBP11YKR098C PAL1Q05518 499 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C SDO1Q07953 250 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C TMC1Q08422 150 aaPredicted RBP1.83□□□□□ -2.12
UBP11YKR098C YOR292CQ08743 309 aa1.83□□□□□ -2.12
UBP11YKR098C YOR114WQ12219 294 aa1.83□□□□□ -2.12
UBP11YKR098C RPP0P05317 312 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C VPS1P21576 704 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C IES6P32617 166 aa1.83□□□□□ -2.12
UBP11YKR098C TIP20P33891 701 aa1.83□□□□□ -2.12
UBP11YKR098C PRS4P38063 326 aaPredicted RBP1.83□□□□□ -2.12
UBP11YKR098C SMP1P38128 452 aa1.83□□□□□ -2.12
UBP11YKR098C PRE5P40302 234 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C RPL21AQ02753 160 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C INP2Q03824 705 aa1.83□□□□□ -2.12
UBP11YKR098C ADH6Q04894 360 aaKnown RBP1.83□□□□□ -2.12
UBP11YKR098C SCW10Q04951 389 aa1.83□□□□□ -2.12
UBP11YKR098C DPP1Q05521 289 aa1.83□□□□□ -2.12
UBP11YKR098C YDR018CQ12185 396 aa1.83□□□□□ -2.12
UBP11YKR098C YOR029WQ12243 111 aa1.83□□□□□ -2.12
UBP11YKR098C HIS1P00498 297 aaKnown RBP1.82□□□□□ -2.12
UBP11YKR098C DAL81P21657 970 aa1.82□□□□□ -2.12
UBP11YKR098C DAL82P21705 255 aa1.82□□□□□ -2.12
UBP11YKR098C AEP1P32493 518 aa1.82□□□□□ -2.12
UBP11YKR098C PRS1P32895 427 aaKnown RBP1.82□□□□□ -2.12
UBP11YKR098C MRPL27P36526 146 aaPredicted RBP1.82□□□□□ -2.12
UBP11YKR098C GGC1P38988 300 aa1.82□□□□□ -2.12
UBP11YKR098C DDI1P40087 428 aa1.82□□□□□ -2.12
UBP11YKR098C IBA57P47158 497 aa1.82□□□□□ -2.12
UBP11YKR098C YPS5P53057 165 aa1.82□□□□□ -2.12
UBP11YKR098C YLR152CP54072 576 aa1.82□□□□□ -2.12
UBP11YKR098C VHS1Q03785 461 aa1.82□□□□□ -2.12
UBP11YKR098C TSA2Q04120 196 aa1.82□□□□□ -2.12
UBP11YKR098C API2Q04413 109 aa1.82□□□□□ -2.12
UBP11YKR098C SEC13Q04491 297 aaKnown RBP1.82□□□□□ -2.12
UBP11YKR098C SFH1Q06168 426 aa1.82□□□□□ -2.12
UBP11YKR098C RUD3Q12234 484 aaKnown RBP1.82□□□□□ -2.12
UBP11YKR098C TFC7Q12415 435 aa1.82□□□□□ -2.12
UBP11YKR098C PET494P07390 489 aaPredicted RBP1.82□□□□□ -2.12
UBP11YKR098C SUA5P32579 426 aa1.82□□□□□ -2.12
UBP11YKR098C RFT1P38206 574 aaPredicted RBP1.82□□□□□ -2.12
UBP11YKR098C MBA1P38300 278 aa1.82□□□□□ -2.12
UBP11YKR098C SDS24P38314 527 aa1.82□□□□□ -2.12
UBP11YKR098C ATG12P38316 186 aa1.82□□□□□ -2.12
UBP11YKR098C FMC1P40491 155 aa1.82□□□□□ -2.12
UBP11YKR098C HIT1P46973 164 aa1.82□□□□□ -2.12
UBP11YKR098C PEX31P53203 462 aa1.82□□□□□ -2.12
UBP11YKR098C FMP48P53233 369 aa1.82□□□□□ -2.12
UBP11YKR098C MNT4P53745 580 aa1.82□□□□□ -2.12
UBP11YKR098C MRPS16Q02608 121 aa1.82□□□□□ -2.12
UBP11YKR098C TRM44Q02648 567 aaKnown RBP1.82□□□□□ -2.12
UBP11YKR098C RNY1Q02933 434 aaKnown RBP1.82□□□□□ -2.12
UBP11YKR098C YMR244WQ04018 355 aa1.82□□□□□ -2.12
UBP11YKR098C VIK1Q12045 647 aa1.82□□□□□ -2.12
UBP11YKR098C RAX2Q12465 1220 aa1.82□□□□□ -2.12
UBP11YKR098C RPS3P05750 240 aaKnown RBP1.81□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 121.6 ms