RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 RALGAPA2Q2PPJ7 1873 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 A0A0U1RQF3 1178 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 FAM237AA0A1B0GTK4 181 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 A0A1B0GUA9 196 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 A0A1B0GVL5 298 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 TISP43B9A030 160 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 SLC16A4O15374 487 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 SLC26A4O43511 780 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 ACTN4O43707 911 aaKnown RBP10.19□□□□□ -0.78
VPS35-206ENST00000565228 EFCAB14O75071 495 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 NMT1P30419 496 aaKnown RBP10.19□□□□□ -0.78
VPS35-206ENST00000565228 NAMPTP43490 491 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 PHKA2P46019 1235 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 CASP5P51878 434 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 KCNA1Q09470 495 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 FAM187BQ17R55 369 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 TPRNQ4KMQ1 711 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 PAN2Q504Q3 1202 aaKnown RBP10.19□□□□□ -0.78
VPS35-206ENST00000565228 GPR153Q6NV75 609 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 DYMQ7RTS9 669 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 MRPL10Q7Z7H8 261 aaKnown RBP10.19□□□□□ -0.78
VPS35-206ENST00000565228 NPAS4Q8IUM7 802 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 CEP120Q8N960 986 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 TMEM161BQ8NDZ6 487 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 GSTCDQ8NEC7 633 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 MYLIPQ8WY64 445 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 CALML4Q96GE6 196 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 ZBTB45Q96K62 511 aaPredicted RBP10.19□□□□□ -0.78
VPS35-206ENST00000565228 NTPCRQ9BSD7 190 aaKnown RBP10.19□□□□□ -0.78
VPS35-206ENST00000565228 TRAIPQ9BWF2 469 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 STRA6Q9BX79 667 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 PDZD7Q9H5P4 517 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 CWH43Q9H720 699 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 PTPRHQ9HD43 1115 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 FAM105AQ9NUU6 356 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 MTUS1Q9ULD2 1270 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 STK24Q9Y6E0 443 aa10.19□□□□□ -0.78
VPS35-206ENST00000565228 FRMD3A2A2Y4 597 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 DENND3A2RUS2 1198 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 POLR2DO15514 142 aaKnown RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 OFD1O75665 1012 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 PRR29P0C7W0 189 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 MAPTP10636 758 aaKnown RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 PDIA4P13667 645 aaKnown RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 PLS3P13797 630 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 PFKFB1P16118 471 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 NCLP19338 710 aaKnown RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 SFPQP23246 707 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS35-206ENST00000565228 DNAJB1P25685 340 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 PBX3P40426 434 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 ME1P48163 572 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 NDUFA8P51970 172 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 NCKAP1LP55160 1127 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 CAMK1Q14012 370 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 RAB30Q15771 203 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 ZC2HC1CQ53FD0 456 aaPredicted RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 RRAGBQ5VZM2 374 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 PPP2R2DQ66LE6 453 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 ATL3Q6DD88 541 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 SLC39A4Q6P5W5 647 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 TMEM192Q8IY95 271 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 EXOC8Q8IYI6 725 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 HELQQ8TDG4 1101 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 KCNG4Q8TDN1 519 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 GDPD5Q8WTR4 605 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 DDX12PQ92771 950 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 KIFAP3Q92845 792 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 DHX58Q96C10 678 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 CDK5RAP3Q96JB5 506 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 CCDC43Q96MW1 224 aaKnown RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 MTIF3Q9H2K0 278 aaKnown RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 NXF3Q9H4D5 531 aaKnown RBP10.18□□□□□ -0.78
VPS35-206ENST00000565228 CHST12Q9NRB3 414 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 C1orf112Q9NSG2 853 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 KBTBD4Q9NVX7 518 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 TMEM161AQ9NX61 479 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 CACNG4Q9UBN1 327 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 SERTAD1Q9UHV2 236 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 MSRAQ9UJ68 235 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 PLAGL2Q9UPG8 496 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 IPPQ9Y573 584 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 PCDHB2Q9Y5E7 798 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 ANK1P16157 1881 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 BRWD1Q9NSI6 2320 aa10.18□□□□□ -0.78
VPS35-206ENST00000565228 CNTNAP2Q9UHC6 1331 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 CCDC169A6NNP5 214 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 TBKBP1A7MCY6 615 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 F8W810 466 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 KLRC4O43908 158 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ZNF623O75123 536 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 GADD45BO75293 160 aaPredicted RBP10.17□□□□□ -0.78
VPS35-206ENST00000565228 PPP1R37O75864 691 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 DDHD2O94830 711 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 NPTXRO95502 500 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 PRKCBP05771 671 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 LIG1P18858 919 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 PROZP22891 400 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 HOXD13P35453 343 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 ERVK-21P61565 698 aa10.17□□□□□ -0.78
VPS35-206ENST00000565228 KRT85P78386 507 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms