RNA–Protein interactions for RNA: YDR177W

UBC1, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC1, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC1	YDR177W	SDO1	Q07953	250 aa	Known RBP	4.18	□□□□□ -1.74
UBC1	YDR177W	DDC1	Q08949	612 aa		4.18	□□□□□ -1.74
UBC1	YDR177W	DAP1	Q12091	152 aa		4.18	□□□□□ -1.74
UBC1	YDR177W	YOR029W	Q12243	111 aa		4.18	□□□□□ -1.74
UBC1	YDR177W	GIS3	Q12418	502 aa		4.18	□□□□□ -1.74
UBC1	YDR177W	VTH1	P40438	1549 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	VTH2	P40890	1549 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	CPR1	P14832	162 aa	Known RBP	4.17	□□□□□ -1.74
UBC1	YDR177W	FUS3	P16892	353 aa	Known RBP	4.17	□□□□□ -1.74
UBC1	YDR177W	COQ1	P18900	473 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	YCR022C	P25620	114 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	CSE1	P33307	960 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	DTR1	P38125	572 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	HAC1	P41546	238 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	YCH1	P42937	148 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	HIT1	P46973	164 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	LSG1	P53145	640 aa	Known RBP	4.17	□□□□□ -1.74
UBC1	YDR177W	GOR1	P53839	350 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	KTR6	P54070	446 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	YDR209C	Q03480	137 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	SNX41	Q04053	625 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	YMR226C	Q05016	267 aa	Known RBP	4.17	□□□□□ -1.74
UBC1	YDR177W	HCR1	Q05775	265 aa	Known RBP	4.17	□□□□□ -1.74
UBC1	YDR177W	SEY1	Q99287	776 aa		4.17	□□□□□ -1.74
UBC1	YDR177W	RPO21	P04050	1733 aa	Known RBP	4.16	□□□□□ -1.74
UBC1	YDR177W	MET5	P47169	1442 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	CDC36	P06100	191 aa	Predicted RBP	4.16	□□□□□ -1.74
UBC1	YDR177W	RPL31A	P0C2H8	113 aa	Known RBP	4.16	□□□□□ -1.74
UBC1	YDR177W	REV1	P12689	985 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	RAD51	P25454	400 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	AVT5	P38176	459 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	YRB2	P40517	327 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	YGR210C	P42942	411 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	SAD1	P43589	448 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	PMT4	P46971	762 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	LCB3	P47013	409 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	SCS3	P53012	380 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	NUP116	Q02630	1113 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	YLR012C	Q07927	99 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	CLP1	Q08685	445 aa	Predicted RBP	4.16	□□□□□ -1.74
UBC1	YDR177W	YDL109C	Q12103	647 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	TFC7	Q12415	435 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	YPR064W	Q12492	139 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	NCB2	Q92317	146 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	NUP159	P40477	1460 aa		4.16	□□□□□ -1.74
UBC1	YDR177W	TSC11	P40061	1430 aa		4.15	□□□□□ -1.74
UBC1	YDR177W	JIP3	O13555	125 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	HEM4	P06174	275 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	YFL068W	P0CX99	160 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	YLL066W-A	P0CY00	160 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	YLL067W-A	P0CY01	160 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	CBS2	P14905	389 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	ERD1	P16151	362 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	AGA1	P32323	725 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	SPO23	P33757	523 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	KTI12	P34253	313 aa	Known RBP	4.15	□□□□□ -1.75
UBC1	YDR177W	ASK1	P35734	292 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	THO1	P40040	218 aa	Known RBP	4.15	□□□□□ -1.75
UBC1	YDR177W	YRB1	P41920	201 aa	Known RBP	4.15	□□□□□ -1.75
UBC1	YDR177W	WWM1	P43582	211 aa	Known RBP	4.15	□□□□□ -1.75
UBC1	YDR177W	NCA3	P46955	337 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	OST6	Q03723	332 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	THP3	Q12049	470 aa	Known RBP	4.15	□□□□□ -1.75
UBC1	YDR177W	MSH5	Q12175	901 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	AYT1	Q12226	474 aa		4.15	□□□□□ -1.75
UBC1	YDR177W	ARG80	P07249	177 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	NAM2	P11325	894 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	HEM15	P16622	393 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	ZRC1	P20107	442 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	RNA15	P25299	296 aa	Predicted RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	PBN1	P25580	416 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	DEP1	P31385	405 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	MGM101	P32787	269 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	ATO2	P32907	282 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	LDB7	P38210	180 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	ARC40	P38328	384 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	SMF2	P38778	549 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	SHC1	P39000	512 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	NPT1	P39683	429 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	COX15	P40086	486 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	YIL152W	P40455	235 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	RPL10	P41805	221 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	MST27	P53176	234 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
UBC1	YDR177W	REX2	P54964	269 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	SLT2	Q00772	484 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	DIG1	Q03063	452 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	ENT5	Q03769	411 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	CTR3	Q06686	241 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	YPR091C	Q06833	770 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	RDL2	Q08742	149 aa	Known RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	FCY22	Q12119	530 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	GET4	Q12125	312 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	PER33	Q12144	273 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	YGK3	Q12222	375 aa	Predicted RBP	4.14	□□□□□ -1.75
UBC1	YDR177W	PRM4	Q12498	284 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	BNI1	P41832	1953 aa		4.14	□□□□□ -1.75
UBC1	YDR177W	RPS18A	P0CX55	146 aa	Known RBP	4.13	□□□□□ -1.75
UBC1	YDR177W	RPS18B	P0CX56	146 aa	Predicted RBP	4.13	□□□□□ -1.75
UBC1	YDR177W	IFM1	P25038	676 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 36.8 ms