RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	YPL066W	Q12194	479 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	AGC1	Q12482	902 aa		4.56	□□□□□ -1.68
CAF4	YKR036C	MSB2	P32334	1306 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	HEM2	P05373	342 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	TFS1	P14306	219 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	ERD1	P16151	362 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	STE50	P25344	346 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	SKT5	P34226	696 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	SEF1	P34228	1148 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	SCD5	P34758	872 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	VBA5	P36172	582 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	MRPL15	P36523	253 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	ASC1	P38011	319 aa	Known RBP	4.55	□□□□□ -1.68
CAF4	YKR036C	MAL32	P38158	584 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	BMT2	P38278	337 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	TSL1	P38427	1098 aa	Known RBP	4.55	□□□□□ -1.68
CAF4	YKR036C	ALP1	P38971	573 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	RFC4	P40339	323 aa	Known RBP	4.55	□□□□□ -1.68
CAF4	YKR036C	PAN6	P40459	309 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	YIL108W	P40483	696 aa	Known RBP	4.55	□□□□□ -1.68
CAF4	YKR036C	PKP1	P40530	394 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	IRC24	P40580	263 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	UFE1	P41834	346 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	YGR012W	P53206	393 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	TIM13	P53299	105 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	MAL12	P53341	584 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	IBD2	P53892	351 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	NIS1	P53939	407 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	ARG5,6	Q01217	863 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	YMR087W	Q04299	284 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	VBA1	Q04301	562 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	DPB4	Q04603	196 aa	Known RBP	4.55	□□□□□ -1.68
CAF4	YKR036C	HOF1	Q05080	669 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	DCR2	Q05924	578 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	YLR446W	Q06204	433 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	NUS1	Q12063	375 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	MMP1	Q12372	583 aa		4.55	□□□□□ -1.68
CAF4	YKR036C	RPB3	P16370	318 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	ERD2	P18414	219 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	MRP20	P32387	263 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	SFA1	P32771	386 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	ELF1	P36053	145 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	HAT2	P39984	401 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	BMT5	P40493	336 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	POP1	P41812	875 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	SNG1	P46950	547 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	DAN1	P47178	298 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	GTO1	P48239	356 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	AAT1	Q01802	451 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	HAS1	Q03532	505 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	LRS4	Q04087	347 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	SEN15	Q04675	128 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	REX3	Q12090	404 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	SEN1	Q00416	2231 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	FMP27	Q06179	2628 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	LAA1	P39526	2014 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	MET3	P08536	511 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	NAM2	P11325	894 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	UNG1	P12887	359 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	MIR1	P23641	311 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	SPT23	P35210	1082 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	TMA19	P35691	167 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	YBR063C	P38083	404 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	RAD55	P38953	406 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	DHH1	P39517	506 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	YIL161W	P40449	235 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	SNM1	P40993	198 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	NIT2	P47016	307 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	ABM1	P47146	123 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	SDT1	P53078	280 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	BOL2	P53082	120 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	GPG1	P53130	126 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	YGL117W	P53133	265 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	KXD1	P53158	218 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	SAY1	P53324	424 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	FMP41	P53889	259 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	MZM1	Q03429	123 aa	Predicted RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	OST6	Q03723	332 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	VID22	Q05934	901 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	BLS1	Q06071	122 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	YOR114W	Q12219	294 aa		4.54	□□□□□ -1.68
CAF4	YKR036C	LPX1	Q12405	387 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	ERG27	Q12452	347 aa	Known RBP	4.54	□□□□□ -1.68
CAF4	YKR036C	PHO5	P00635	467 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	ADE8	P04161	214 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	CDC7	P06243	507 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	SPT3	P06844	337 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	TRP4	P07285	380 aa	Predicted RBP	4.53	□□□□□ -1.68
CAF4	YKR036C	SWI5	P08153	709 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	ARE1	P25628	610 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	SFK1	P35735	353 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	SDH4	P37298	181 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	IDP2	P41939	412 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	VNX1	P42839	908 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	SLS1	P42900	643 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	CDC14	Q00684	551 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	CUE4	Q04201	117 aa	Predicted RBP	4.53	□□□□□ -1.68
CAF4	YKR036C	SSK1	Q07084	712 aa		4.53	□□□□□ -1.68
CAF4	YKR036C	SDO1	Q07953	250 aa	Known RBP	4.53	□□□□□ -1.68
CAF4	YKR036C	MED7	Q08278	222 aa		4.53	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms