RNA–Protein interactions for RNA: YPL104W

MSD1, Transcript of Mitochondrial aspartyl-tRNA synthetase, yeast

Gene MSD1, Length 1,977 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSD1	YPL104W	ADE6	P38972	1358 aa	Known RBP	4.65	□□□□□ -1.67
MSD1	YPL104W	PRS1	P32895	427 aa	Known RBP	4.64	□□□□□ -1.67
MSD1	YPL104W	MTR4	P47047	1073 aa	Known RBP	4.64	□□□□□ -1.67
MSD1	YPL104W	LEU2	P04173	364 aa	Predicted RBP	4.64	□□□□□ -1.67
MSD1	YPL104W	DBP1	P24784	617 aa	Known RBP	4.64	□□□□□ -1.67
MSD1	YPL104W	BIM1	P40013	344 aa		4.64	□□□□□ -1.67
MSD1	YPL104W	THI12	P42883	340 aa		4.64	□□□□□ -1.67
MSD1	YPL104W	THI5	P43534	340 aa		4.64	□□□□□ -1.67
MSD1	YPL104W	YJL007C	P47080	104 aa		4.64	□□□□□ -1.67
MSD1	YPL104W	THI11	P47183	340 aa		4.64	□□□□□ -1.67
MSD1	YPL104W	THI13	Q07748	340 aa		4.64	□□□□□ -1.67
MSD1	YPL104W	AIM44	Q99299	758 aa		4.64	□□□□□ -1.67
MSD1	YPL104W	YEF3	P16521	1044 aa	Known RBP	4.63	□□□□□ -1.67
MSD1	YPL104W	PDI1	P17967	522 aa	Known RBP	4.63	□□□□□ -1.67
MSD1	YPL104W	PTC3	P34221	468 aa	Known RBP	4.63	□□□□□ -1.67
MSD1	YPL104W	YRF1-2	P40105	1681 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	YIL177C	P40434	1758 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	YJL225C	P40889	1758 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	TRK1	P12685	1235 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	VHR2	P40041	505 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	IOC4	Q04213	475 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	TAP42	Q04372	366 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	KAR2	P16474	682 aa	Known RBP	4.62	□□□□□ -1.67
MSD1	YPL104W	CSN12	P47130	423 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	RTF1	P53064	558 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	AUS1	Q08409	1394 aa		4.62	□□□□□ -1.67
MSD1	YPL104W	RRP5	Q05022	1729 aa	Known RBP	4.61	□□□□□ -1.67
MSD1	YPL104W	GLN1	P32288	370 aa	Known RBP	4.61	□□□□□ -1.67
MSD1	YPL104W	ATG32	P40458	529 aa		4.61	□□□□□ -1.67
MSD1	YPL104W	FKS3	Q04952	1785 aa		4.61	□□□□□ -1.67
MSD1	YPL104W	SSA2	P10592	639 aa	Known RBP	4.6	□□□□□ -1.67
MSD1	YPL104W	GRX4	P32642	244 aa		4.6	□□□□□ -1.67
MSD1	YPL104W	UBP14	P38237	781 aa	Known RBP	4.6	□□□□□ -1.67
MSD1	YPL104W	YDR090C	Q03193	310 aa		4.6	□□□□□ -1.67
MSD1	YPL104W	RPP0	P05317	312 aa	Known RBP	4.6	□□□□□ -1.67
MSD1	YPL104W	CSE4	P36012	229 aa		4.6	□□□□□ -1.67
MSD1	YPL104W	MAP2	P38174	421 aa	Known RBP	4.6	□□□□□ -1.67
MSD1	YPL104W	PRP43	P53131	767 aa	Known RBP	4.6	□□□□□ -1.67
MSD1	YPL104W	APC1	P53886	1748 aa		4.6	□□□□□ -1.67
MSD1	YPL104W	URB1	P34241	1764 aa	Known RBP	4.59	□□□□□ -1.67
MSD1	YPL104W	YGL015C	P33199	130 aa		4.59	□□□□□ -1.67
MSD1	YPL104W	RPO41	P13433	1351 aa	Known RBP	4.59	□□□□□ -1.68
MSD1	YPL104W	RPS24A	P0CX31	135 aa	Known RBP	4.58	□□□□□ -1.68
MSD1	YPL104W	RPS24B	P0CX32	135 aa	Known RBP	4.58	□□□□□ -1.68
MSD1	YPL104W	SSA4	P22202	642 aa	Known RBP	4.58	□□□□□ -1.68
MSD1	YPL104W	YDL144C	Q07589	356 aa		4.58	□□□□□ -1.68
MSD1	YPL104W	VPS27	P40343	622 aa	Known RBP	4.58	□□□□□ -1.68
MSD1	YPL104W	HIM1	Q06674	414 aa		4.58	□□□□□ -1.68
MSD1	YPL104W	CDC45	Q08032	650 aa		4.58	□□□□□ -1.68
MSD1	YPL104W	DPS1	P04802	557 aa	Known RBP	4.57	□□□□□ -1.68
MSD1	YPL104W	ERG12	P07277	443 aa		4.57	□□□□□ -1.68
MSD1	YPL104W	RPL34B	P40525	121 aa	Known RBP	4.57	□□□□□ -1.68
MSD1	YPL104W	NOP2	P40991	618 aa	Known RBP	4.57	□□□□□ -1.68
MSD1	YPL104W	YOR238W	Q08634	303 aa		4.57	□□□□□ -1.68
MSD1	YPL104W	KIC1	P38692	1080 aa		4.56	□□□□□ -1.68
MSD1	YPL104W	RTR1	P40084	226 aa	Predicted RBP	4.56	□□□□□ -1.68
MSD1	YPL104W	RRP46	P53256	223 aa	Predicted RBP	4.56	□□□□□ -1.68
MSD1	YPL104W	PAP2	P53632	584 aa	Known RBP	4.56	□□□□□ -1.68
MSD1	YPL104W	GAS4	Q08271	471 aa		4.56	□□□□□ -1.68
MSD1	YPL104W	TIF1	P10081	395 aa	Known RBP	4.56	□□□□□ -1.68
MSD1	YPL104W	MPP10	P47083	593 aa	Known RBP	4.56	□□□□□ -1.68
MSD1	YPL104W	YLR326W	Q06170	240 aa	Known RBP	4.56	□□□□□ -1.68
MSD1	YPL104W	PSE1	P32337	1089 aa	Known RBP	4.55	□□□□□ -1.68
MSD1	YPL104W	SLX5	P32828	619 aa	Known RBP	4.55	□□□□□ -1.68
MSD1	YPL104W	KTR1	P27810	393 aa	Known RBP	4.54	□□□□□ -1.68
MSD1	YPL104W	UBP10	P53874	792 aa	Predicted RBP	4.54	□□□□□ -1.68
MSD1	YPL104W	TYW1	Q08960	810 aa	Known RBP	4.54	□□□□□ -1.68
MSD1	YPL104W	YPR204W	Q08995	1032 aa		4.54	□□□□□ -1.68
MSD1	YPL104W	SUI2	P20459	304 aa	Known RBP	4.54	□□□□□ -1.68
MSD1	YPL104W	PRD1	P25375	712 aa		4.54	□□□□□ -1.68
MSD1	YPL104W	YRB30	P53107	440 aa	Predicted RBP	4.54	□□□□□ -1.68
MSD1	YPL104W	PIB1	Q06651	286 aa		4.54	□□□□□ -1.68
MSD1	YPL104W	RVB2	Q12464	471 aa	Known RBP	4.54	□□□□□ -1.68
MSD1	YPL104W	PRP45	P28004	379 aa	Predicted RBP	4.53	□□□□□ -1.68
MSD1	YPL104W	YBL036C	P38197	257 aa		4.53	□□□□□ -1.68
MSD1	YPL104W	ATH1	P48016	1211 aa		4.53	□□□□□ -1.68
MSD1	YPL104W	YRF1-4	O13559	1382 aa		4.53	□□□□□ -1.68
MSD1	YPL104W	PRP5	P21372	849 aa	Predicted RBP	4.53	□□□□□ -1.68
MSD1	YPL104W	SIS1	P25294	352 aa	Known RBP	4.53	□□□□□ -1.68
MSD1	YPL104W	SLD2	P34252	453 aa		4.53	□□□□□ -1.68
MSD1	YPL104W	TEA1	P47988	759 aa		4.53	□□□□□ -1.68
MSD1	YPL104W	RPL34A	P87262	121 aa	Predicted RBP	4.53	□□□□□ -1.68
MSD1	YPL104W	SIR4	P11978	1358 aa		4.52	□□□□□ -1.69
MSD1	YPL104W	RAD54	P32863	898 aa		4.52	□□□□□ -1.69
MSD1	YPL104W	TTI1	P36097	1038 aa		4.52	□□□□□ -1.69
MSD1	YPL104W	AKL1	P38080	1108 aa	Known RBP	4.52	□□□□□ -1.69
MSD1	YPL104W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
MSD1	YPL104W	SAP155	P43612	1002 aa		4.52	□□□□□ -1.69
MSD1	YPL104W	THI22	Q06490	572 aa		4.52	□□□□□ -1.69
MSD1	YPL104W	RTG2	P32608	588 aa	Known RBP	4.51	□□□□□ -1.69
MSD1	YPL104W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.51	□□□□□ -1.69	not detected
MSD1	YPL104W	MSB3	P48566	633 aa	Predicted RBP	4.51	□□□□□ -1.69
MSD1	YPL104W	SLM3	Q12093	417 aa		4.51	□□□□□ -1.69
MSD1	YPL104W	RSF2	P46974	1380 aa		4.51	□□□□□ -1.69
MSD1	YPL104W	TPD3	P31383	635 aa		4.51	□□□□□ -1.69
MSD1	YPL104W	BIO2	P32451	375 aa		4.51	□□□□□ -1.69
MSD1	YPL104W	FUN12	P39730	1002 aa	Known RBP	4.51	□□□□□ -1.69
MSD1	YPL104W	HEF3	P53978	1044 aa	Known RBP	4.51	□□□□□ -1.69
MSD1	YPL104W	NOB1	Q08444	459 aa	Known RBP	4.51	□□□□□ -1.69
MSD1	YPL104W	GRE2	Q12068	342 aa	Known RBP	4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms