RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W UGA3P26370 528 aa7.82□□□□□ -1.16
ROT1YMR200W GAR1P28007 205 aaKnown RBP7.82□□□□□ -1.16
ROT1YMR200W APP1P53933 587 aa7.82□□□□□ -1.16
ROT1YMR200W TFB3Q03290 321 aa7.82□□□□□ -1.16
ROT1YMR200W ENV9Q08651 330 aa7.82□□□□□ -1.16
ROT1YMR200W TEC1P18412 486 aa7.81□□□□□ -1.16
ROT1YMR200W PKC1P24583 1151 aa7.79□□□□□ -1.16
ROT1YMR200W YBL086CP38177 466 aa7.79□□□□□ -1.16
ROT1YMR200W EMW1P42842 904 aaKnown RBP7.79□□□□□ -1.16
ROT1YMR200W PTK2P47116 818 aaKnown RBP7.79□□□□□ -1.16
ROT1YMR200W YDR444WQ04093 687 aa7.78□□□□□ -1.16
ROT1YMR200W LCB5Q06147 687 aaKnown RBP7.77□□□□□ -1.17
ROT1YMR200W BRL1P38770 471 aa7.76□□□□□ -1.17
ROT1YMR200W RGA1P39083 1007 aa7.76□□□□□ -1.17
ROT1YMR200W CSE4P36012 229 aa7.75□□□□□ -1.17
ROT1YMR200W YBL036CP38197 257 aa7.75□□□□□ -1.17
ROT1YMR200W NAF1P53919 492 aaKnown RBP7.75□□□□□ -1.17
ROT1YMR200W GUT2P32191 649 aa7.73□□□□□ -1.17
ROT1YMR200W SRF1Q12516 437 aa7.73□□□□□ -1.17
ROT1YMR200W YDJ1P25491 409 aaKnown RBP7.72□□□□□ -1.17
ROT1YMR200W BIO2P32451 375 aa7.72□□□□□ -1.17
ROT1YMR200W RTT106P40161 455 aa7.72□□□□□ -1.17
ROT1YMR200W YPL062WQ02781 134 aa7.72□□□□□ -1.17
ROT1YMR200W MKS1P34072 584 aa7.71□□□□□ -1.18
ROT1YMR200W AAD14P42884 376 aa7.71□□□□□ -1.18
ROT1YMR200W FRA1Q07825 749 aa7.71□□□□□ -1.18
ROT1YMR200W GBP2P25555 427 aaKnown RBP RIP-Chip data7.7□□□□□ -1.18not detected
ROT1YMR200W DFG5Q05031 458 aa7.7□□□□□ -1.18
ROT1YMR200W ISF1P32488 338 aa7.69□□□□□ -1.18
ROT1YMR200W NUP85P46673 744 aa7.69□□□□□ -1.18
ROT1YMR200W OPT2Q06593 877 aa7.69□□□□□ -1.18
ROT1YMR200W MCM16Q12262 181 aa7.69□□□□□ -1.18
ROT1YMR200W SPT5P27692 1063 aaKnown RBP7.68□□□□□ -1.18
ROT1YMR200W STE20Q03497 939 aaKnown RBP7.68□□□□□ -1.18
ROT1YMR200W YDL176WQ12027 708 aa7.68□□□□□ -1.18
ROT1YMR200W ARG82P07250 355 aa7.67□□□□□ -1.18
ROT1YMR200W FBP26P32604 452 aa7.66□□□□□ -1.18
ROT1YMR200W DLD1P32891 587 aa7.66□□□□□ -1.18
ROT1YMR200W EMP47P43555 445 aa7.66□□□□□ -1.18
ROT1YMR200W ATG20Q07528 640 aa7.65□□□□□ -1.18
ROT1YMR200W STE6P12866 1290 aa7.63□□□□□ -1.19
ROT1YMR200W APL6P46682 809 aa7.63□□□□□ -1.19
ROT1YMR200W DMA2P53924 522 aa7.63□□□□□ -1.19
ROT1YMR200W YNL108CP53929 270 aa7.63□□□□□ -1.19
ROT1YMR200W GLY1P37303 387 aaKnown RBP7.62□□□□□ -1.19
ROT1YMR200W YJR098CP47139 656 aa7.62□□□□□ -1.19
ROT1YMR200W ENO2P00925 437 aaKnown RBP7.61□□□□□ -1.19
ROT1YMR200W SUP45P12385 437 aaKnown RBP7.61□□□□□ -1.19
ROT1YMR200W YJL007CP47080 104 aa7.61□□□□□ -1.19
ROT1YMR200W LSC2P53312 427 aa7.61□□□□□ -1.19
ROT1YMR200W ISU1Q03020 165 aa7.61□□□□□ -1.19
ROT1YMR200W YLR346CQ06139 101 aa7.61□□□□□ -1.19
ROT1YMR200W BDS1Q08347 646 aa7.61□□□□□ -1.19
ROT1YMR200W MIP1P15801 1254 aa7.6□□□□□ -1.19
ROT1YMR200W CAF120P53836 1060 aa7.6□□□□□ -1.19
ROT1YMR200W ACO2P39533 789 aa7.59□□□□□ -1.19
ROT1YMR200W MRX12P47084 519 aa7.59□□□□□ -1.19
ROT1YMR200W TY1A-BLQ12266 440 aa7.59□□□□□ -1.19
ROT1YMR200W SCW11P53189 542 aa7.58□□□□□ -1.2
ROT1YMR200W ISR1Q06098 443 aaKnown RBP7.58□□□□□ -1.2
ROT1YMR200W TCB1Q12466 1186 aa7.58□□□□□ -1.2
ROT1YMR200W HAL5P38970 855 aaKnown RBP7.57□□□□□ -1.2
ROT1YMR200W BIM1P40013 344 aa7.56□□□□□ -1.2
ROT1YMR200W RIM21P48565 533 aa7.56□□□□□ -1.2
ROT1YMR200W RGA2Q06407 1009 aa7.56□□□□□ -1.2
ROT1YMR200W ATG32P40458 529 aa7.55□□□□□ -1.2
ROT1YMR200W YIR007WP40566 764 aa7.55□□□□□ -1.2
ROT1YMR200W YPP1P46951 817 aa7.54□□□□□ -1.2
ROT1YMR200W UBP2Q01476 1272 aa7.54□□□□□ -1.2
ROT1YMR200W RDS2P19541 446 aaKnown RBP7.53□□□□□ -1.2
ROT1YMR200W SOH1P38633 127 aa7.53□□□□□ -1.2
ROT1YMR200W SPT2P06843 333 aaPredicted RBP7.5□□□□□ -1.21
ROT1YMR200W TIF1P10081 395 aaKnown RBP7.5□□□□□ -1.21
ROT1YMR200W UTR2P32623 467 aa7.5□□□□□ -1.21
ROT1YMR200W UTP13Q05946 817 aaKnown RBP7.5□□□□□ -1.21
ROT1YMR200W WTM2Q12206 467 aa7.5□□□□□ -1.21
ROT1YMR200W MRX10Q05648 414 aa7.49□□□□□ -1.21
ROT1YMR200W ENO1P00924 437 aaKnown RBP7.48□□□□□ -1.21
ROT1YMR200W OSH7P38755 437 aa7.48□□□□□ -1.21
ROT1YMR200W DLD3P39976 496 aaKnown RBP7.48□□□□□ -1.21
ROT1YMR200W RLF2Q12495 606 aa7.48□□□□□ -1.21
ROT1YMR200W DAT1P13483 248 aaKnown RBP7.47□□□□□ -1.21
ROT1YMR200W ATG3P40344 310 aa7.47□□□□□ -1.21
ROT1YMR200W ROG3P43602 733 aa7.47□□□□□ -1.21
ROT1YMR200W HGH1P48362 394 aaKnown RBP7.47□□□□□ -1.21
ROT1YMR200W CCP1P00431 361 aa7.46□□□□□ -1.22
ROT1YMR200W CDC19P00549 500 aaKnown RBP7.46□□□□□ -1.22
ROT1YMR200W VTC4P47075 721 aa7.46□□□□□ -1.22
ROT1YMR200W TY1A-MR1Q04215 440 aa7.46□□□□□ -1.22
ROT1YMR200W HDA3Q06623 655 aa7.46□□□□□ -1.22
ROT1YMR200W RPP2BP02400 110 aaKnown RBP7.45□□□□□ -1.22
ROT1YMR200W RTG2P32608 588 aaKnown RBP7.45□□□□□ -1.22
ROT1YMR200W NAM8Q00539 523 aaKnown RBP7.45□□□□□ -1.22
ROT1YMR200W SLX8P40072 274 aa7.44□□□□□ -1.22
ROT1YMR200W DAL1P32375 460 aa7.43□□□□□ -1.22
ROT1YMR200W SSN3P39073 555 aa7.43□□□□□ -1.22
ROT1YMR200W UTP7P40055 554 aaKnown RBP7.43□□□□□ -1.22
ROT1YMR200W RPL34BP40525 121 aaKnown RBP7.43□□□□□ -1.22
ROT1YMR200W CBC2Q08920 208 aaKnown RBP RIP-Chip data7.43□□□□□ -1.22not detected
ROT1YMR200W TBS1P38114 1094 aa7.42□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 53.2 ms