RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C ALD3P54114 506 aa6.38□□□□□ -1.39
NUP116YMR047C COBP00163 385 aa6.38□□□□□ -1.39
NUP116YMR047C RCR1P38212 213 aa6.37□□□□□ -1.39
NUP116YMR047C MSB4Q12317 492 aa6.36□□□□□ -1.39
NUP116YMR047C MDG1P53885 366 aa6.35□□□□□ -1.39
NUP116YMR047C TOS1P38288 455 aa6.35□□□□□ -1.39
NUP116YMR047C INP54Q08227 384 aaKnown RBP6.34□□□□□ -1.39
NUP116YMR047C BUG1Q12191 341 aa6.34□□□□□ -1.39
NUP116YMR047C LYS4P49367 693 aaPredicted RBP6.33□□□□□ -1.4
NUP116YMR047C ADE16P54113 591 aaKnown RBP6.33□□□□□ -1.4
NUP116YMR047C DPS1P04802 557 aaKnown RBP6.33□□□□□ -1.4
NUP116YMR047C RPS0BP46654 252 aaKnown RBP6.33□□□□□ -1.4
NUP116YMR047C NUP145P49687 1317 aa6.32□□□□□ -1.4
NUP116YMR047C RPG1P38249 964 aaKnown RBP6.3□□□□□ -1.4
NUP116YMR047C GRE2Q12068 342 aaKnown RBP6.3□□□□□ -1.4
NUP116YMR047C RTG3P38165 486 aa6.3□□□□□ -1.4
NUP116YMR047C OSM1P21375 501 aaKnown RBP6.29□□□□□ -1.4
NUP116YMR047C ATG13Q06628 738 aa6.29□□□□□ -1.4
NUP116YMR047C SSK22P25390 1331 aaPredicted RBP6.29□□□□□ -1.4
NUP116YMR047C DSD1P53095 428 aa6.28□□□□□ -1.4
NUP116YMR047C ERT1P38140 529 aa6.28□□□□□ -1.4
NUP116YMR047C FRK1Q03002 865 aaPredicted RBP6.28□□□□□ -1.4
NUP116YMR047C HKR1P41809 1802 aa6.27□□□□□ -1.41
NUP116YMR047C POL5P39985 1022 aaKnown RBP6.27□□□□□ -1.41
NUP116YMR047C SAP155P43612 1002 aa6.27□□□□□ -1.41
NUP116YMR047C PDS5Q04264 1277 aa6.27□□□□□ -1.41
NUP116YMR047C FIG2P25653 1609 aa6.27□□□□□ -1.41
NUP116YMR047C CTT1P06115 562 aa6.27□□□□□ -1.41
NUP116YMR047C PHM7Q12252 991 aa6.27□□□□□ -1.41
NUP116YMR047C YKL222CP35995 705 aa6.26□□□□□ -1.41
NUP116YMR047C DIB1Q06819 143 aaPredicted RBP6.26□□□□□ -1.41
NUP116YMR047C NST1P53935 1240 aa6.25□□□□□ -1.41
NUP116YMR047C GAS4Q08271 471 aa6.25□□□□□ -1.41
NUP116YMR047C UGA3P26370 528 aa6.25□□□□□ -1.41
NUP116YMR047C HIM1Q06674 414 aa6.25□□□□□ -1.41
NUP116YMR047C KAR2P16474 682 aaKnown RBP6.24□□□□□ -1.41
NUP116YMR047C AOS1Q06624 347 aa6.24□□□□□ -1.41
NUP116YMR047C KCC4P25389 1037 aa6.24□□□□□ -1.41
NUP116YMR047C PFF1P38244 976 aa6.24□□□□□ -1.41
NUP116YMR047C NYV1Q12255 253 aa6.23□□□□□ -1.41
NUP116YMR047C AKL1P38080 1108 aaKnown RBP6.22□□□□□ -1.41
NUP116YMR047C RMT2Q03305 412 aa6.22□□□□□ -1.41
NUP116YMR047C RRT14P40470 206 aa6.22□□□□□ -1.41
NUP116YMR047C YBP2P53169 641 aa6.22□□□□□ -1.41
NUP116YMR047C YNL050CP53952 270 aa6.22□□□□□ -1.41
NUP116YMR047C NTH2P35172 780 aa6.21□□□□□ -1.41
NUP116YMR047C SSP2Q08646 371 aa6.21□□□□□ -1.42
NUP116YMR047C MAM1P40065 302 aa6.2□□□□□ -1.42
NUP116YMR047C YRB30P53107 440 aaPredicted RBP6.2□□□□□ -1.42
NUP116YMR047C RAT1Q02792 1006 aaKnown RBP6.2□□□□□ -1.42
NUP116YMR047C ERO1Q03103 563 aa6.19□□□□□ -1.42
NUP116YMR047C PSH1Q12161 406 aa6.19□□□□□ -1.42
NUP116YMR047C YJR008WP47085 338 aa6.19□□□□□ -1.42
NUP116YMR047C ENV11P53246 860 aa6.18□□□□□ -1.42
NUP116YMR047C FPK1P53739 893 aa6.18□□□□□ -1.42
NUP116YMR047C NOP53Q12080 455 aaKnown RBP6.18□□□□□ -1.42
NUP116YMR047C YER156CP40093 338 aaKnown RBP6.17□□□□□ -1.42
NUP116YMR047C SIT4P20604 311 aa6.17□□□□□ -1.42
NUP116YMR047C MSN5P52918 1224 aa6.17□□□□□ -1.42
NUP116YMR047C KIN4Q01919 800 aa6.17□□□□□ -1.42
NUP116YMR047C NSE3Q05541 303 aa6.17□□□□□ -1.42
NUP116YMR047C HSP104P31539 908 aaKnown RBP6.16□□□□□ -1.42
NUP116YMR047C PEX21P50091 288 aa6.15□□□□□ -1.42
NUP116YMR047C PMD1P32634 1753 aa6.15□□□□□ -1.42
NUP116YMR047C GRX6Q12438 231 aa6.15□□□□□ -1.43
NUP116YMR047C POM152P39685 1337 aa6.14□□□□□ -1.43
NUP116YMR047C RPP0P05317 312 aaKnown RBP6.14□□□□□ -1.43
NUP116YMR047C EAF6P47128 113 aa6.14□□□□□ -1.43
NUP116YMR047C TUM1Q08686 304 aaKnown RBP6.14□□□□□ -1.43
NUP116YMR047C PUS5Q06244 254 aa6.14□□□□□ -1.43
NUP116YMR047C TRK1P12685 1235 aa6.14□□□□□ -1.43
NUP116YMR047C SHC1P39000 512 aa6.14□□□□□ -1.43
NUP116YMR047C RRP46P53256 223 aaPredicted RBP6.13□□□□□ -1.43
NUP116YMR047C SAC3P46674 1301 aa6.13□□□□□ -1.43
NUP116YMR047C LPD1P09624 499 aaKnown RBP6.12□□□□□ -1.43
NUP116YMR047C HPC2Q01448 625 aa6.12□□□□□ -1.43
NUP116YMR047C UBX2Q04228 584 aa6.12□□□□□ -1.43
NUP116YMR047C YLR271WQ06152 274 aa6.12□□□□□ -1.43
NUP116YMR047C RLP24Q07915 199 aaKnown RBP6.12□□□□□ -1.43
NUP116YMR047C DUR1,2P32528 1835 aaKnown RBP6.12□□□□□ -1.43
NUP116YMR047C BUB1P41695 1021 aaKnown RBP RIP-Chip data6.11□□□□□ -1.43not detected
NUP116YMR047C TEA1P47988 759 aa6.11□□□□□ -1.43
NUP116YMR047C ORC1P54784 914 aaPredicted RBP6.11□□□□□ -1.43
NUP116YMR047C SET1P38827 1080 aaKnown RBP6.11□□□□□ -1.43
NUP116YMR047C UBP16Q02863 499 aa6.11□□□□□ -1.43
NUP116YMR047C TYW1Q08960 810 aaKnown RBP6.11□□□□□ -1.43
NUP116YMR047C SYF1Q04048 859 aaPredicted RBP6.1□□□□□ -1.43
NUP116YMR047C FAS2P19097 1887 aaKnown RBP6.1□□□□□ -1.43
NUP116YMR047C ARG8P18544 423 aa6.1□□□□□ -1.43
NUP116YMR047C PRD1P25375 712 aa6.1□□□□□ -1.43
NUP116YMR047C LEO1P38439 464 aa6.1□□□□□ -1.43
NUP116YMR047C RIX7Q07844 837 aaKnown RBP6.1□□□□□ -1.43
NUP116YMR047C HAT1Q12341 374 aa6.1□□□□□ -1.43
NUP116YMR047C AIM44Q99299 758 aa6.1□□□□□ -1.43
NUP116YMR047C YLR278CQ05854 1341 aa6.09□□□□□ -1.43
NUP116YMR047C DEF1P35732 738 aaKnown RBP6.09□□□□□ -1.44
NUP116YMR047C YOL057WQ08225 711 aa6.09□□□□□ -1.44
NUP116YMR047C BDF2Q07442 638 aa6.08□□□□□ -1.44
NUP116YMR047C ATG20Q07528 640 aa6.08□□□□□ -1.44
NUP116YMR047C PAP2P53632 584 aaKnown RBP6.08□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 48.8 ms