RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	AOS1	Q06624	347 aa		4.99	□□□□□ -1.61
USA1	YML029W	MAM1	P40065	302 aa		4.98	□□□□□ -1.61
USA1	YML029W	UGA3	P26370	528 aa		4.98	□□□□□ -1.61
USA1	YML029W	AKL1	P38080	1108 aa	Known RBP	4.98	□□□□□ -1.61
USA1	YML029W	YNL050C	P53952	270 aa		4.98	□□□□□ -1.61
USA1	YML029W	TRK1	P12685	1235 aa		4.97	□□□□□ -1.61
USA1	YML029W	YKR075C	P36155	307 aa		4.97	□□□□□ -1.61
USA1	YML029W	YRB30	P53107	440 aa	Predicted RBP	4.97	□□□□□ -1.61
USA1	YML029W	ATG13	Q06628	738 aa		4.97	□□□□□ -1.61
USA1	YML029W	INP54	Q08227	384 aa	Known RBP	4.97	□□□□□ -1.61
USA1	YML029W	PAP2	P53632	584 aa	Known RBP	4.97	□□□□□ -1.61
USA1	YML029W	RAD4	P14736	754 aa		4.96	□□□□□ -1.61
USA1	YML029W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.61	not detected
USA1	YML029W	ALD2	P47771	506 aa		4.96	□□□□□ -1.61
USA1	YML029W	NTH2	P35172	780 aa		4.96	□□□□□ -1.62
USA1	YML029W	BDF1	P35817	686 aa		4.96	□□□□□ -1.62
USA1	YML029W	UGA2	P38067	497 aa		4.96	□□□□□ -1.62
USA1	YML029W	ISW2	Q08773	1120 aa		4.96	□□□□□ -1.62
USA1	YML029W	RIM15	P43565	1770 aa		4.96	□□□□□ -1.62
USA1	YML029W	NUP145	P49687	1317 aa		4.96	□□□□□ -1.62
USA1	YML029W	COB	P00163	385 aa		4.95	□□□□□ -1.62
USA1	YML029W	OSM1	P21375	501 aa	Known RBP	4.95	□□□□□ -1.62
USA1	YML029W	KCC4	P25389	1037 aa		4.95	□□□□□ -1.62
USA1	YML029W	SPT21	P35209	758 aa		4.95	□□□□□ -1.62
USA1	YML029W	RPN11	P43588	306 aa	Known RBP	4.95	□□□□□ -1.62
USA1	YML029W	DMA2	P53924	522 aa		4.95	□□□□□ -1.62
USA1	YML029W	NSE3	Q05541	303 aa		4.95	□□□□□ -1.62
USA1	YML029W	MSB4	Q12317	492 aa		4.95	□□□□□ -1.62
USA1	YML029W	UTP22	P53254	1237 aa	Predicted RBP	4.95	□□□□□ -1.62
USA1	YML029W	ADE16	P54113	591 aa	Known RBP	4.95	□□□□□ -1.62
USA1	YML029W	RPG1	P38249	964 aa	Known RBP	4.94	□□□□□ -1.62
USA1	YML029W	NPR2	P39923	615 aa		4.94	□□□□□ -1.62
USA1	YML029W	RTR1	P40084	226 aa	Predicted RBP	4.94	□□□□□ -1.62
USA1	YML029W	PRD1	P25375	712 aa		4.94	□□□□□ -1.62
USA1	YML029W	ALD3	P54114	506 aa		4.94	□□□□□ -1.62
USA1	YML029W	HSP104	P31539	908 aa	Known RBP	4.93	□□□□□ -1.62
USA1	YML029W	VPS27	P40343	622 aa	Known RBP	4.93	□□□□□ -1.62
USA1	YML029W	RRP46	P53256	223 aa	Predicted RBP	4.93	□□□□□ -1.62
USA1	YML029W	RMT2	Q03305	412 aa		4.93	□□□□□ -1.62
USA1	YML029W	CDC45	Q08032	650 aa		4.93	□□□□□ -1.62
USA1	YML029W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
USA1	YML029W	YBP2	P53169	641 aa		4.92	□□□□□ -1.62
USA1	YML029W	PHM7	Q12252	991 aa		4.92	□□□□□ -1.62
USA1	YML029W	ZDS1	P50111	915 aa	Known RBP	4.92	□□□□□ -1.62
USA1	YML029W	FRK1	Q03002	865 aa	Predicted RBP	4.92	□□□□□ -1.62
USA1	YML029W	SSP2	Q08646	371 aa		4.92	□□□□□ -1.62
USA1	YML029W	BUG1	Q12191	341 aa		4.92	□□□□□ -1.62
USA1	YML029W	GYP7	P48365	746 aa		4.91	□□□□□ -1.62
USA1	YML029W	SSA2	P10592	639 aa	Known RBP	4.91	□□□□□ -1.62
USA1	YML029W	YBL086C	P38177	466 aa		4.91	□□□□□ -1.62
USA1	YML029W	RPS9B	P05755	195 aa	Known RBP	4.9	□□□□□ -1.62
USA1	YML029W	PRS1	P32895	427 aa	Known RBP	4.9	□□□□□ -1.62
USA1	YML029W	GRE2	Q12068	342 aa	Known RBP	4.9	□□□□□ -1.62
USA1	YML029W	OXP1	P28273	1286 aa		4.9	□□□□□ -1.63
USA1	YML029W	DIB1	Q06819	143 aa	Predicted RBP	4.9	□□□□□ -1.63
USA1	YML029W	YDL144C	Q07589	356 aa		4.9	□□□□□ -1.63
USA1	YML029W	SSK22	P25390	1331 aa	Predicted RBP	4.9	□□□□□ -1.63
USA1	YML029W	NOP53	Q12080	455 aa	Known RBP	4.89	□□□□□ -1.63
USA1	YML029W	MPP10	P47083	593 aa	Known RBP	4.88	□□□□□ -1.63
USA1	YML029W	YJR008W	P47085	338 aa		4.88	□□□□□ -1.63
USA1	YML029W	CTH1	P47976	325 aa		4.88	□□□□□ -1.63
USA1	YML029W	THI22	Q06490	572 aa		4.88	□□□□□ -1.63
USA1	YML029W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
USA1	YML029W	HEF3	P53978	1044 aa	Known RBP	4.88	□□□□□ -1.63
USA1	YML029W	MAK21	Q12176	1025 aa	Known RBP	4.88	□□□□□ -1.63
USA1	YML029W	YOL057W	Q08225	711 aa		4.87	□□□□□ -1.63
USA1	YML029W	UTP10	P42945	1769 aa	Known RBP	4.87	□□□□□ -1.63
USA1	YML029W	RRT14	P40470	206 aa		4.87	□□□□□ -1.63
USA1	YML029W	HGH1	P48362	394 aa	Known RBP	4.87	□□□□□ -1.63
USA1	YML029W	LYS4	P49367	693 aa	Predicted RBP	4.87	□□□□□ -1.63
USA1	YML029W	TOS1	P38288	455 aa		4.86	□□□□□ -1.63
USA1	YML029W	SAP155	P43612	1002 aa		4.86	□□□□□ -1.63
USA1	YML029W	DNM1	P54861	757 aa		4.86	□□□□□ -1.63
USA1	YML029W	NYV1	Q12255	253 aa		4.86	□□□□□ -1.63
USA1	YML029W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.86	□□□□□ -1.63	not detected
USA1	YML029W	RAT1	Q02792	1006 aa	Known RBP	4.85	□□□□□ -1.63
USA1	YML029W	SUI2	P20459	304 aa	Known RBP	4.85	□□□□□ -1.63
USA1	YML029W	YLR271W	Q06152	274 aa		4.85	□□□□□ -1.63
USA1	YML029W	RTT109	Q07794	436 aa		4.85	□□□□□ -1.63
USA1	YML029W	BMS1	Q08965	1183 aa	Known RBP	4.85	□□□□□ -1.63
USA1	YML029W	RVB2	Q12464	471 aa	Known RBP	4.84	□□□□□ -1.63
USA1	YML029W	COQ4	O13525	335 aa		4.84	□□□□□ -1.64
USA1	YML029W	TPD3	P31383	635 aa		4.84	□□□□□ -1.64
USA1	YML029W	CST6	P40535	587 aa		4.84	□□□□□ -1.64
USA1	YML029W	YPP1	P46951	817 aa		4.84	□□□□□ -1.64
USA1	YML029W	YDR306C	Q06640	478 aa		4.84	□□□□□ -1.64
USA1	YML029W	ALE1	Q08548	619 aa		4.83	□□□□□ -1.64
USA1	YML029W	YKL222C	P35995	705 aa		4.83	□□□□□ -1.64
USA1	YML029W	PFF1	P38244	976 aa		4.83	□□□□□ -1.64
USA1	YML029W	RPN1	P38764	993 aa	Known RBP	4.83	□□□□□ -1.64
USA1	YML029W	SET1	P38827	1080 aa	Known RBP	4.83	□□□□□ -1.64
USA1	YML029W	TEA1	P47988	759 aa		4.83	□□□□□ -1.64
USA1	YML029W	TUM1	Q08686	304 aa	Known RBP	4.83	□□□□□ -1.64
USA1	YML029W	SUP35	P05453	685 aa	Known RBP	4.82	□□□□□ -1.64
USA1	YML029W	CTT1	P06115	562 aa		4.82	□□□□□ -1.64
USA1	YML029W	SRT1	Q03175	343 aa		4.82	□□□□□ -1.64
USA1	YML029W	LPD1	P09624	499 aa	Known RBP	4.82	□□□□□ -1.64
USA1	YML029W	ERT1	P38140	529 aa		4.82	□□□□□ -1.64
USA1	YML029W	HAT1	Q12341	374 aa		4.82	□□□□□ -1.64
USA1	YML029W	SAC3	P46674	1301 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 24.1 ms