RNA–Protein interactions for RNA: YLR430W

SEN1, Transcript of Presumed helicase and subunit of the Nrd1 complex (Nrd1p-Nab3p-Sen1p), yeast

Gene SEN1, Length 6,696 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEN1	YLR430W	ARP5	P53946	755 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	MPE1	P35728	441 aa	Known RBP	4.79	□□□□□ -1.64
SEN1	YLR430W	AIM20	P40451	204 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	YML133C	Q03099	1374 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	YLL067C	Q07888	1374 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	YLL066C	Q99208	1374 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	ORM2	Q06144	216 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	NFI1	Q12216	726 aa		4.79	□□□□□ -1.64
SEN1	YLR430W	PDI1	P17967	522 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	CDC3	P32457	520 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	YOR1	P53049	1477 aa		4.78	□□□□□ -1.64
SEN1	YLR430W	MRPL10	P36520	322 aa		4.78	□□□□□ -1.64
SEN1	YLR430W	TOM71	P38825	639 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	ROM2	P51862	1356 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	SUB1	P54000	292 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	RRT14	P40470	206 aa		4.78	□□□□□ -1.64
SEN1	YLR430W	SSA1	P10591	642 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	SSA2	P10592	639 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	THR4	P16120	514 aa	Known RBP	4.78	□□□□□ -1.64
SEN1	YLR430W	PEX19	Q07418	342 aa		4.78	□□□□□ -1.64
SEN1	YLR430W	GEA2	P39993	1459 aa	Known RBP	4.78	□□□□□ -1.65
SEN1	YLR430W	CDC37	P06101	506 aa	Known RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	DPH5	P32469	300 aa	Predicted RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	BIK1	P11709	440 aa		4.77	□□□□□ -1.65
SEN1	YLR430W	MFT1	P33441	392 aa	Known RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	SLD2	P34252	453 aa		4.77	□□□□□ -1.65
SEN1	YLR430W	GDT1	P38301	280 aa	Predicted RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	MVP1	P40959	511 aa	Known RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	PRP31	P49704	494 aa	Predicted RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	YKL068W-A	Q3E826	78 aa		4.77	□□□□□ -1.65
SEN1	YLR430W	YCF1	P39109	1515 aa	Known RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	SUP35	P05453	685 aa	Known RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	HYR1	P40581	163 aa	Known RBP	4.77	□□□□□ -1.65
SEN1	YLR430W	VPS15	P22219	1454 aa		4.77	□□□□□ -1.65
SEN1	YLR430W	PHO87	P25360	923 aa		4.77	□□□□□ -1.65
SEN1	YLR430W	GGA1	Q06336	557 aa		4.77	□□□□□ -1.65
SEN1	YLR430W	CIR1	P42940	261 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	IMH1	Q06704	911 aa	Known RBP	4.76	□□□□□ -1.65
SEN1	YLR430W	NUP145	P49687	1317 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	CLN1	P20437	546 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	SWI6	P09959	803 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	POL32	P47110	350 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	SEC9	P40357	651 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	STE20	Q03497	939 aa	Known RBP	4.76	□□□□□ -1.65
SEN1	YLR430W	TY4A-H	Q6Q5P6	413 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	MPH1	P40562	993 aa		4.76	□□□□□ -1.65
SEN1	YLR430W	TY1B-A	O13527	1196 aa	Known RBP	4.75	□□□□□ -1.65
SEN1	YLR430W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.75	□□□□□ -1.65	not detected
SEN1	YLR430W	OLA1	P38219	394 aa	Known RBP	4.75	□□□□□ -1.65
SEN1	YLR430W	SSK2	P53599	1579 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	NUF2	P33895	451 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	RPC37	P36121	282 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	LEM3	P42838	414 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	YPL225W	Q08971	146 aa	Known RBP	4.75	□□□□□ -1.65
SEN1	YLR430W	ISW1	P38144	1129 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	OMS1	Q06668	471 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	YRF1-4	O13559	1382 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	AUS1	Q08409	1394 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	YIL092W	P40497	633 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	TIM50	Q02776	476 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	TLG2	Q08144	397 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	SMC6	Q12749	1114 aa		4.75	□□□□□ -1.65
SEN1	YLR430W	BRF1	P29056	596 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	SHE4	P51534	789 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	KEX2	P13134	814 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	EIS1	Q05050	843 aa	Known RBP	4.74	□□□□□ -1.65
SEN1	YLR430W	SIT1	P39980	628 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	KRE33	P53914	1056 aa	Known RBP	4.74	□□□□□ -1.65
SEN1	YLR430W	HUL5	P53119	910 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	INP2	Q03824	705 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	VMS1	Q04311	632 aa	Known RBP	4.74	□□□□□ -1.65
SEN1	YLR430W	NKP1	Q12493	238 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	TFG1	P41895	735 aa	Predicted RBP	4.74	□□□□□ -1.65
SEN1	YLR430W	CCM1	P48237	864 aa	Predicted RBP	4.74	□□□□□ -1.65
SEN1	YLR430W	INP52	P50942	1183 aa		4.74	□□□□□ -1.65
SEN1	YLR430W	PDR5	P33302	1511 aa	Known RBP	4.73	□□□□□ -1.65
SEN1	YLR430W	CDC10	P25342	322 aa	Known RBP	4.73	□□□□□ -1.65
SEN1	YLR430W	DNM1	P54861	757 aa		4.73	□□□□□ -1.65
SEN1	YLR430W	MAK21	Q12176	1025 aa	Known RBP	4.73	□□□□□ -1.65
SEN1	YLR430W	SLP1	Q12232	587 aa		4.73	□□□□□ -1.65
SEN1	YLR430W	YME2	P32843	850 aa		4.73	□□□□□ -1.65
SEN1	YLR430W	IST1	P53843	298 aa	Predicted RBP	4.73	□□□□□ -1.65
SEN1	YLR430W	SEC26	P41810	973 aa	Known RBP	4.73	□□□□□ -1.65
SEN1	YLR430W	RCF1	Q03713	159 aa		4.73	□□□□□ -1.65
SEN1	YLR430W	UBX2	Q04228	584 aa		4.73	□□□□□ -1.65
SEN1	YLR430W	GYL1	Q04322	720 aa		4.73	□□□□□ -1.65
SEN1	YLR430W	TSR1	Q07381	788 aa	Known RBP	4.73	□□□□□ -1.65
SEN1	YLR430W	RRP1	P35178	278 aa	Predicted RBP	4.72	□□□□□ -1.65
SEN1	YLR430W	NPR3	P38742	1146 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	ARO80	Q04052	950 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	NOC3	Q07896	663 aa	Predicted RBP	4.72	□□□□□ -1.65
SEN1	YLR430W	HIR3	P47171	1648 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	MCM1	P11746	286 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	CWH41	P53008	833 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	ATG9	Q12142	997 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	TPS3	P38426	1054 aa	Known RBP	4.72	□□□□□ -1.65
SEN1	YLR430W	YNL035C	P53962	389 aa	Known RBP	4.72	□□□□□ -1.65
SEN1	YLR430W	YMR196W	Q04336	1088 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	DAL5	P15365	543 aa		4.72	□□□□□ -1.65
SEN1	YLR430W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 18.7 ms