RNA–Protein interactions for RNA: YJL041W

NSP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NSP1, Length 2,472 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSP1	YJL041W	BUD20	Q08004	166 aa	Predicted RBP	4.21	□□□□□ -1.74
NSP1	YJL041W	SRB8	P25648	1427 aa		4.21	□□□□□ -1.74
NSP1	YJL041W	SMC4	Q12267	1418 aa		4.21	□□□□□ -1.74
NSP1	YJL041W	CDC11	P32458	415 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	SPT16	P32558	1035 aa	Known RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	VPS72	Q03388	795 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	SRC1	Q03707	834 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	TUM1	Q08686	304 aa	Known RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	HIF1	Q12373	385 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	YPK9	Q12697	1472 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	MYO4	P32492	1471 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	SSA1	P10591	642 aa	Known RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	KTR1	P27810	393 aa	Known RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	YMR124W	P39523	943 aa	Known RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	HUL5	P53119	910 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	PKH3	Q03306	898 aa	Predicted RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	TYW1	Q08960	810 aa	Known RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	YVC1	Q12324	675 aa		4.2	□□□□□ -1.74
NSP1	YJL041W	THO2	P53552	1597 aa	Known RBP	4.2	□□□□□ -1.74
NSP1	YJL041W	ISM1	P48526	1002 aa		4.19	□□□□□ -1.74
NSP1	YJL041W	LAM6	Q08001	693 aa		4.19	□□□□□ -1.74
NSP1	YJL041W	RAD59	Q12223	238 aa		4.19	□□□□□ -1.74
NSP1	YJL041W	SWI3	P32591	825 aa		4.19	□□□□□ -1.74
NSP1	YJL041W	TLG1	Q03322	224 aa		4.19	□□□□□ -1.74
NSP1	YJL041W	TY1A-DR4	O74302	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-H	P0C2I4	478 aa	Known RBP	4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-A	P0CX57	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-PR1	P0CX58	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-OR	P0CX59	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-PR2	P0CX60	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-DR5	P0CX65	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-ER2	P0CX66	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-GR3	P0CX67	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-LR1	P0CX68	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-MR2	P0CX69	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	NUD1	P32336	851 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-JR2	P47099	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-DR1	Q03856	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-ML1	Q04706	440 aa	Known RBP	4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-BR	Q12217	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-NL2	Q12470	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	TY1A-GR2	Q12485	440 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	ATG32	P40458	529 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	YNL115C	P53925	644 aa		4.18	□□□□□ -1.74
NSP1	YJL041W	YSH1	Q06224	779 aa	Predicted RBP	4.18	□□□□□ -1.74
NSP1	YJL041W	RRP15	Q06511	250 aa	Predicted RBP	4.18	□□□□□ -1.74
NSP1	YJL041W	MON2	P48563	1636 aa	Predicted RBP	4.18	□□□□□ -1.74
NSP1	YJL041W	RAS1	P01119	309 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	SEC2	P17065	759 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	ARG8	P18544	423 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	OPY1	P38271	328 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	SPT6	P23615	1451 aa	Known RBP	4.17	□□□□□ -1.74
NSP1	YJL041W	MMS1	Q06211	1407 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	TIF1	P10081	395 aa	Known RBP	4.17	□□□□□ -1.74
NSP1	YJL041W	ESS1	P22696	170 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	LTV1	P34078	463 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	GEF1	P37020	779 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
NSP1	YJL041W	NNF2	P53253	936 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	SAS4	Q04003	481 aa		4.17	□□□□□ -1.74
NSP1	YJL041W	YPP1	P46951	817 aa		4.16	□□□□□ -1.74
NSP1	YJL041W	MDG1	P53885	366 aa		4.16	□□□□□ -1.74
NSP1	YJL041W	SUB2	Q07478	446 aa	Known RBP	4.16	□□□□□ -1.74
NSP1	YJL041W	GYP1	Q08484	637 aa		4.16	□□□□□ -1.74
NSP1	YJL041W	BUD4	P47136	1447 aa		4.16	□□□□□ -1.74
NSP1	YJL041W	SLY41	P22215	453 aa		4.16	□□□□□ -1.74
NSP1	YJL041W	NPL4	P33755	580 aa		4.16	□□□□□ -1.74
NSP1	YJL041W	NOP8	Q08287	484 aa	Predicted RBP	4.16	□□□□□ -1.74
NSP1	YJL041W	NOT3	P06102	836 aa	Known RBP	4.15	□□□□□ -1.74
NSP1	YJL041W	PRT1	P06103	763 aa	Known RBP	4.15	□□□□□ -1.74
NSP1	YJL041W	RTG2	P32608	588 aa	Known RBP	4.15	□□□□□ -1.74
NSP1	YJL041W	SEC27	P41811	889 aa	Known RBP	4.15	□□□□□ -1.74
NSP1	YJL041W	MPP10	P47083	593 aa	Known RBP	4.15	□□□□□ -1.74
NSP1	YJL041W	APL5	Q08951	932 aa	Known RBP	4.15	□□□□□ -1.74
NSP1	YJL041W	TSC11	P40061	1430 aa		4.15	□□□□□ -1.75
NSP1	YJL041W	PUS6	P53294	404 aa		4.15	□□□□□ -1.75
NSP1	YJL041W	PSH1	Q12161	406 aa		4.15	□□□□□ -1.75
NSP1	YJL041W	NAF1	P53919	492 aa	Known RBP	4.14	□□□□□ -1.75
NSP1	YJL041W	PRP3	Q03338	469 aa	Predicted RBP	4.14	□□□□□ -1.75
NSP1	YJL041W	RLP24	Q07915	199 aa	Known RBP	4.14	□□□□□ -1.75
NSP1	YJL041W	MAK16	P10962	306 aa	Predicted RBP	4.14	□□□□□ -1.75
NSP1	YJL041W	AMS1	P22855	1083 aa		4.14	□□□□□ -1.75
NSP1	YJL041W	ROX1	P25042	368 aa		4.14	□□□□□ -1.75
NSP1	YJL041W	SCJ1	P25303	377 aa		4.14	□□□□□ -1.75
NSP1	YJL041W	ASF1	P32447	279 aa		4.14	□□□□□ -1.75
NSP1	YJL041W	EFB1	P32471	206 aa	Known RBP	4.14	□□□□□ -1.75
NSP1	YJL041W	NOP14	Q99207	810 aa	Known RBP	4.14	□□□□□ -1.75
NSP1	YJL041W	GEA1	P47102	1408 aa	Predicted RBP	4.13	□□□□□ -1.75
NSP1	YJL041W	SUP45	P12385	437 aa	Known RBP	4.13	□□□□□ -1.75
NSP1	YJL041W	BIO2	P32451	375 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	TCD1	P38756	429 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	YPR204W	Q08995	1032 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	RAD9	P14737	1309 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	YJU3	P28321	313 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	TOA1	P32773	286 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	RSC30	P38781	883 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	YNL108C	P53929	270 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	YNL050C	P53952	270 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	TBF1	Q02457	562 aa		4.13	□□□□□ -1.75
NSP1	YJL041W	VPS30	Q02948	557 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 33.3 ms