RNA–Protein interactions for RNA: YIL017C

VID28, Transcript of GID Complex subunit, serves as adaptor for regulatory subunit Vid24p, yeast

Gene VID28, Length 2,766 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VID28	YIL017C	TY1B-ER2	Q03619	1755 aa		4.87	□□□□□ -1.63
VID28	YIL017C	TY1B-MR1	Q04214	1755 aa		4.87	□□□□□ -1.63
VID28	YIL017C	TY1B-MR2	Q04670	1755 aa	Known RBP	4.87	□□□□□ -1.63
VID28	YIL017C	TY1B-LR1	Q12088	1755 aa	Known RBP	4.87	□□□□□ -1.63
VID28	YIL017C	TY1B-NL1	Q12112	1755 aa		4.87	□□□□□ -1.63
VID28	YIL017C	TY1B-GR1	Q12141	1755 aa		4.87	□□□□□ -1.63
VID28	YIL017C	TY1B-BL	Q12490	1755 aa		4.87	□□□□□ -1.63
VID28	YIL017C	PTC3	P34221	468 aa	Known RBP	4.87	□□□□□ -1.63
VID28	YIL017C	YFR006W	P43590	535 aa		4.87	□□□□□ -1.63
VID28	YIL017C	YPP1	P46951	817 aa		4.87	□□□□□ -1.63
VID28	YIL017C	VPS60	Q03390	229 aa		4.87	□□□□□ -1.63
VID28	YIL017C	YOL087C	Q99247	1116 aa		4.87	□□□□□ -1.63
VID28	YIL017C	SPT2	P06843	333 aa	Predicted RBP	4.87	□□□□□ -1.63
VID28	YIL017C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
VID28	YIL017C	SIC1	P38634	284 aa		4.86	□□□□□ -1.63
VID28	YIL017C	TPM2	P40414	161 aa		4.86	□□□□□ -1.63
VID28	YIL017C	KIP3	P53086	805 aa	Known RBP	4.86	□□□□□ -1.63
VID28	YIL017C	YNL011C	P53980	444 aa		4.86	□□□□□ -1.63
VID28	YIL017C	RAD26	P40352	1085 aa		4.86	□□□□□ -1.63
VID28	YIL017C	STU2	P46675	888 aa		4.86	□□□□□ -1.63
VID28	YIL017C	LCD1	Q04377	747 aa		4.86	□□□□□ -1.63
VID28	YIL017C	YDR090C	Q03193	310 aa		4.85	□□□□□ -1.63
VID28	YIL017C	MAK21	Q12176	1025 aa	Known RBP	4.85	□□□□□ -1.63
VID28	YIL017C	AUS1	Q08409	1394 aa		4.85	□□□□□ -1.63
VID28	YIL017C	DNF3	Q12674	1656 aa		4.85	□□□□□ -1.63
VID28	YIL017C	MPE1	P35728	441 aa	Known RBP	4.85	□□□□□ -1.63
VID28	YIL017C	DJP1	P40564	432 aa		4.85	□□□□□ -1.63
VID28	YIL017C	SIR4	P11978	1358 aa		4.84	□□□□□ -1.63
VID28	YIL017C	ROM2	P51862	1356 aa	Known RBP	4.84	□□□□□ -1.63
VID28	YIL017C	LTV1	P34078	463 aa		4.84	□□□□□ -1.63
VID28	YIL017C	UBP14	P38237	781 aa	Known RBP	4.84	□□□□□ -1.63
VID28	YIL017C	MED8	P38304	223 aa		4.84	□□□□□ -1.63
VID28	YIL017C	IML1	P47170	1584 aa		4.84	□□□□□ -1.63
VID28	YIL017C	RNT1	Q02555	471 aa		4.84	□□□□□ -1.63
VID28	YIL017C	HOS3	Q02959	697 aa	Known RBP	4.84	□□□□□ -1.63
VID28	YIL017C	DOP1	Q03921	1698 aa		4.84	□□□□□ -1.63
VID28	YIL017C	CEP3	P40969	608 aa		4.84	□□□□□ -1.63
VID28	YIL017C	YNL050C	P53952	270 aa		4.84	□□□□□ -1.63
VID28	YIL017C	PRP3	Q03338	469 aa	Predicted RBP	4.84	□□□□□ -1.63
VID28	YIL017C	ESC2	Q06340	456 aa		4.84	□□□□□ -1.63
VID28	YIL017C	YOR238W	Q08634	303 aa		4.84	□□□□□ -1.63
VID28	YIL017C	MLP1	Q02455	1875 aa	Known RBP	4.84	□□□□□ -1.64
VID28	YIL017C	RPO21	P04050	1733 aa	Known RBP	4.84	□□□□□ -1.64
VID28	YIL017C	RAV1	P47104	1357 aa		4.84	□□□□□ -1.64
VID28	YIL017C	HYR1	P40581	163 aa	Known RBP	4.83	□□□□□ -1.64
VID28	YIL017C	NST1	P53935	1240 aa		4.83	□□□□□ -1.64
VID28	YIL017C	CHC1	P22137	1653 aa	Known RBP	4.83	□□□□□ -1.64
VID28	YIL017C	PDR11	P40550	1411 aa		4.83	□□□□□ -1.64
VID28	YIL017C	KRE33	P53914	1056 aa	Known RBP	4.83	□□□□□ -1.64
VID28	YIL017C	BDH2	P39713	417 aa		4.82	□□□□□ -1.64
VID28	YIL017C	ECM1	P39715	212 aa		4.82	□□□□□ -1.64
VID28	YIL017C	RTC1	Q08281	1341 aa		4.82	□□□□□ -1.64
VID28	YIL017C	PET111	P08468	800 aa		4.82	□□□□□ -1.64
VID28	YIL017C	SUI2	P20459	304 aa	Known RBP	4.82	□□□□□ -1.64
VID28	YIL017C	PBY1	P38254	753 aa		4.82	□□□□□ -1.64
VID28	YIL017C	MRS2	Q01926	470 aa		4.82	□□□□□ -1.64
VID28	YIL017C	COG8	Q04632	607 aa		4.82	□□□□□ -1.64
VID28	YIL017C	LTE1	P07866	1435 aa		4.82	□□□□□ -1.64
VID28	YIL017C	NOP8	Q08287	484 aa	Predicted RBP	4.82	□□□□□ -1.64
VID28	YIL017C	BMS1	Q08965	1183 aa	Known RBP	4.81	□□□□□ -1.64
VID28	YIL017C	SPO14	P36126	1683 aa		4.81	□□□□□ -1.64
VID28	YIL017C	RRT14	P40470	206 aa		4.81	□□□□□ -1.64
VID28	YIL017C	DSN1	P40568	576 aa		4.81	□□□□□ -1.64
VID28	YIL017C	HPC2	Q01448	625 aa		4.81	□□□□□ -1.64
VID28	YIL017C	RRP5	Q05022	1729 aa	Known RBP	4.8	□□□□□ -1.64
VID28	YIL017C	ECM16	Q04217	1267 aa	Known RBP	4.8	□□□□□ -1.64
VID28	YIL017C	RRP15	Q06511	250 aa	Predicted RBP	4.8	□□□□□ -1.64
VID28	YIL017C	RAD2	P07276	1031 aa		4.8	□□□□□ -1.64
VID28	YIL017C	MSH1	P25846	959 aa		4.8	□□□□□ -1.64
VID28	YIL017C	ITC1	P53125	1264 aa		4.8	□□□□□ -1.64
VID28	YIL017C	YLR326W	Q06170	240 aa	Known RBP	4.8	□□□□□ -1.64
VID28	YIL017C	MDS3	P53094	1487 aa		4.79	□□□□□ -1.64
VID28	YIL017C	TAF13	P11747	167 aa		4.79	□□□□□ -1.64
VID28	YIL017C	YDL144C	Q07589	356 aa		4.79	□□□□□ -1.64
VID28	YIL017C	VMA1	P17255	1071 aa	Known RBP	4.78	□□□□□ -1.64
VID28	YIL017C	DEP1	P31385	405 aa		4.78	□□□□□ -1.64
VID28	YIL017C	NTE1	Q04958	1679 aa		4.78	□□□□□ -1.64
VID28	YIL017C	VHR2	P40041	505 aa		4.78	□□□□□ -1.64
VID28	YIL017C	RIO2	P40160	425 aa	Known RBP	4.78	□□□□□ -1.64
VID28	YIL017C	RSC1	P53236	928 aa		4.78	□□□□□ -1.64
VID28	YIL017C	VPS30	Q02948	557 aa		4.78	□□□□□ -1.64
VID28	YIL017C	RPA190	P10964	1664 aa	Known RBP	4.77	□□□□□ -1.65
VID28	YIL017C	RAD3	P06839	778 aa		4.77	□□□□□ -1.65
VID28	YIL017C	MSH3	P25336	1018 aa		4.77	□□□□□ -1.65
VID28	YIL017C	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.77	□□□□□ -1.65	not detected
VID28	YIL017C	NNF2	P53253	936 aa		4.77	□□□□□ -1.65
VID28	YIL017C	ATF2	P53296	535 aa		4.77	□□□□□ -1.65
VID28	YIL017C	HST1	P53685	503 aa		4.77	□□□□□ -1.65
VID28	YIL017C	TFB3	Q03290	321 aa		4.77	□□□□□ -1.65
VID28	YIL017C	SEC39	Q12745	709 aa		4.77	□□□□□ -1.65
VID28	YIL017C	SOL3	P38858	249 aa		4.77	□□□□□ -1.65
VID28	YIL017C	YVC1	Q12324	675 aa		4.77	□□□□□ -1.65
VID28	YIL017C	KRE5	P22023	1365 aa		4.77	□□□□□ -1.65
VID28	YIL017C	SAP190	P36123	1033 aa		4.76	□□□□□ -1.65
VID28	YIL017C	CIR1	P42940	261 aa		4.76	□□□□□ -1.65
VID28	YIL017C	SML1	Q04964	104 aa		4.76	□□□□□ -1.65
VID28	YIL017C	BNR1	P40450	1375 aa		4.76	□□□□□ -1.65
VID28	YIL017C	KEX1	P09620	729 aa		4.76	□□□□□ -1.65
VID28	YIL017C	SRS2	P12954	1174 aa		4.76	□□□□□ -1.65
VID28	YIL017C	CLB1	P24868	471 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 8.7 ms