RNA–Protein interactions for RNA: YFR024C-A

LSB3, Transcript of Protein containing a C-terminal SH3 domain, yeast

Gene LSB3, Length 1,380 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LSB3	YFR024C-A	DSD1	P53095	428 aa		12.04	□□□□□ -0.48
LSB3	YFR024C-A	INP54	Q08227	384 aa	Known RBP	12.04	□□□□□ -0.48
LSB3	YFR024C-A	PSD2	P53037	1138 aa	Known RBP	12.03	□□□□□ -0.48
LSB3	YFR024C-A	CTF4	Q01454	927 aa		12.03	□□□□□ -0.48
LSB3	YFR024C-A	SSA2	P10592	639 aa	Known RBP	12.01	□□□□□ -0.49
LSB3	YFR024C-A	SPT7	P35177	1332 aa		12	□□□□□ -0.49
LSB3	YFR024C-A	HSP104	P31539	908 aa	Known RBP	12	□□□□□ -0.49
LSB3	YFR024C-A	AKL1	P38080	1108 aa	Known RBP	12	□□□□□ -0.49
LSB3	YFR024C-A	CTH1	P47976	325 aa		12	□□□□□ -0.49
LSB3	YFR024C-A	OSM1	P21375	501 aa	Known RBP	11.99	□□□□□ -0.49
LSB3	YFR024C-A	NUP145	P49687	1317 aa		11.98	□□□□□ -0.49
LSB3	YFR024C-A	MSB4	Q12317	492 aa		11.98	□□□□□ -0.49
LSB3	YFR024C-A	GRX1	P25373	110 aa	Known RBP	11.96	□□□□□ -0.49
LSB3	YFR024C-A	BDF1	P35817	686 aa		11.96	□□□□□ -0.49
LSB3	YFR024C-A	YBP2	P53169	641 aa		11.94	□□□□□ -0.5
LSB3	YFR024C-A	IOC4	Q04213	475 aa		11.94	□□□□□ -0.5
LSB3	YFR024C-A	AOS1	Q06624	347 aa		11.94	□□□□□ -0.5
LSB3	YFR024C-A	RAD4	P14736	754 aa		11.93	□□□□□ -0.5
LSB3	YFR024C-A	RRP46	P53256	223 aa	Predicted RBP	11.92	□□□□□ -0.5
LSB3	YFR024C-A	BUG1	Q12191	341 aa		11.92	□□□□□ -0.5
LSB3	YFR024C-A	ALD3	P54114	506 aa		11.91	□□□□□ -0.5
LSB3	YFR024C-A	NTH2	P35172	780 aa		11.9	□□□□□ -0.5
LSB3	YFR024C-A	GRE2	Q12068	342 aa	Known RBP	11.9	□□□□□ -0.5
LSB3	YFR024C-A	KCC4	P25389	1037 aa		11.89	□□□□□ -0.51
LSB3	YFR024C-A	RTR1	P40084	226 aa	Predicted RBP	11.88	□□□□□ -0.51
LSB3	YFR024C-A	UTP22	P53254	1237 aa	Predicted RBP	11.87	□□□□□ -0.51
LSB3	YFR024C-A	RMT2	Q03305	412 aa		11.86	□□□□□ -0.51
LSB3	YFR024C-A	UGA3	P26370	528 aa		11.84	□□□□□ -0.51
LSB3	YFR024C-A	TUM1	Q08686	304 aa	Known RBP	11.84	□□□□□ -0.51
LSB3	YFR024C-A	PRD1	P25375	712 aa		11.83	□□□□□ -0.52
LSB3	YFR024C-A	YNL050C	P53952	270 aa		11.83	□□□□□ -0.52
LSB3	YFR024C-A	MDG1	P53885	366 aa		11.82	□□□□□ -0.52
LSB3	YFR024C-A	TSR3	Q12094	313 aa	Known RBP	11.82	□□□□□ -0.52
LSB3	YFR024C-A	ALE1	Q08548	619 aa		11.81	□□□□□ -0.52
LSB3	YFR024C-A	TOS1	P38288	455 aa		11.8	□□□□□ -0.52
LSB3	YFR024C-A	NSE3	Q05541	303 aa		11.8	□□□□□ -0.52
LSB3	YFR024C-A	NOP53	Q12080	455 aa	Known RBP	11.8	□□□□□ -0.52
LSB3	YFR024C-A	UTP10	P42945	1769 aa	Known RBP	11.8	□□□□□ -0.52
LSB3	YFR024C-A	LYS2	P07702	1392 aa		11.8	□□□□□ -0.52
LSB3	YFR024C-A	HPC2	Q01448	625 aa		11.78	□□□□□ -0.52
LSB3	YFR024C-A	MAM1	P40065	302 aa		11.77	□□□□□ -0.53
LSB3	YFR024C-A	PHM7	Q12252	991 aa		11.77	□□□□□ -0.53
LSB3	YFR024C-A	NYV1	Q12255	253 aa		11.77	□□□□□ -0.53
LSB3	YFR024C-A	SAP155	P43612	1002 aa		11.76	□□□□□ -0.53
LSB3	YFR024C-A	MPP10	P47083	593 aa	Known RBP	11.76	□□□□□ -0.53
LSB3	YFR024C-A	TEA1	P47988	759 aa		11.76	□□□□□ -0.53
LSB3	YFR024C-A	ZDS1	P50111	915 aa	Known RBP	11.76	□□□□□ -0.53
LSB3	YFR024C-A	THI22	Q06490	572 aa		11.76	□□□□□ -0.53
LSB3	YFR024C-A	SSP2	Q08646	371 aa		11.76	□□□□□ -0.53
LSB3	YFR024C-A	BUD27	P43573	796 aa	Known RBP RIP-Chip data	11.75	□□□□□ -0.53	not detected
LSB3	YFR024C-A	YDL144C	Q07589	356 aa		11.75	□□□□□ -0.53
LSB3	YFR024C-A	SSA1	P10591	642 aa	Known RBP	11.74	□□□□□ -0.53
LSB3	YFR024C-A	YCK3	P39962	524 aa		11.73	□□□□□ -0.53
LSB3	YFR024C-A	YFR016C	P43597	1233 aa	Known RBP	11.72	□□□□□ -0.53
LSB3	YFR024C-A	RIX7	Q07844	837 aa	Known RBP	11.72	□□□□□ -0.53
LSB3	YFR024C-A	RRT14	P40470	206 aa		11.71	□□□□□ -0.53
LSB3	YFR024C-A	RTT109	Q07794	436 aa		11.71	□□□□□ -0.53
LSB3	YFR024C-A	SER1	P33330	395 aa	Known RBP	11.7	□□□□□ -0.54
LSB3	YFR024C-A	MSN5	P52918	1224 aa		11.7	□□□□□ -0.54
LSB3	YFR024C-A	BMS1	Q08965	1183 aa	Known RBP	11.7	□□□□□ -0.54
LSB3	YFR024C-A	RPP0	P05317	312 aa	Known RBP	11.69	□□□□□ -0.54
LSB3	YFR024C-A	GYP7	P48365	746 aa		11.69	□□□□□ -0.54
LSB3	YFR024C-A	COQ4	O13525	335 aa		11.68	□□□□□ -0.54
LSB3	YFR024C-A	EAF6	P47128	113 aa		11.68	□□□□□ -0.54
LSB3	YFR024C-A	HEF3	P53978	1044 aa	Known RBP	11.68	□□□□□ -0.54
LSB3	YFR024C-A	RPL17A	P05740	184 aa	Known RBP	11.67	□□□□□ -0.54
LSB3	YFR024C-A	LPD1	P09624	499 aa	Known RBP	11.67	□□□□□ -0.54
LSB3	YFR024C-A	RPL17B	P46990	184 aa	Known RBP	11.67	□□□□□ -0.54
LSB3	YFR024C-A	RAT1	Q02792	1006 aa	Known RBP	11.67	□□□□□ -0.54
LSB3	YFR024C-A	TPD3	P31383	635 aa		11.67	□□□□□ -0.54
LSB3	YFR024C-A	YGL082W	P53155	381 aa		11.67	□□□□□ -0.54
LSB3	YFR024C-A	CTI6	Q08923	506 aa		11.67	□□□□□ -0.54
LSB3	YFR024C-A	CTT1	P06115	562 aa		11.66	□□□□□ -0.54
LSB3	YFR024C-A	YKL222C	P35995	705 aa		11.66	□□□□□ -0.54
LSB3	YFR024C-A	ERT1	P38140	529 aa		11.66	□□□□□ -0.54
LSB3	YFR024C-A	ARG8	P18544	423 aa		11.65	□□□□□ -0.55
LSB3	YFR024C-A	YBR287W	P38355	427 aa		11.65	□□□□□ -0.55
LSB3	YFR024C-A	YOL057W	Q08225	711 aa		11.64	□□□□□ -0.55
LSB3	YFR024C-A	DIB1	Q06819	143 aa	Predicted RBP	11.63	□□□□□ -0.55
LSB3	YFR024C-A	PFF1	P38244	976 aa		11.62	□□□□□ -0.55
LSB3	YFR024C-A	YER156C	P40093	338 aa	Known RBP	11.62	□□□□□ -0.55
LSB3	YFR024C-A	VPS27	P40343	622 aa	Known RBP	11.62	□□□□□ -0.55
LSB3	YFR024C-A	VPS64	Q03944	604 aa		11.62	□□□□□ -0.55
LSB3	YFR024C-A	YPR204W	Q08995	1032 aa		11.62	□□□□□ -0.55
LSB3	YFR024C-A	APL2	P36000	726 aa	Predicted RBP	11.61	□□□□□ -0.55
LSB3	YFR024C-A	ZDS2	P54786	942 aa		11.61	□□□□□ -0.55
LSB3	YFR024C-A	DCD1	P06773	312 aa		11.6	□□□□□ -0.55
LSB3	YFR024C-A	DNM1	P54861	757 aa		11.6	□□□□□ -0.55
LSB3	YFR024C-A	SRT1	Q03175	343 aa		11.6	□□□□□ -0.55
LSB3	YFR024C-A	BDF2	Q07442	638 aa		11.6	□□□□□ -0.55
LSB3	YFR024C-A	SSK22	P25390	1331 aa	Predicted RBP	11.6	□□□□□ -0.55
LSB3	YFR024C-A	SUI2	P20459	304 aa	Known RBP	11.59	□□□□□ -0.55
LSB3	YFR024C-A	CWH41	P53008	833 aa		11.59	□□□□□ -0.55
LSB3	YFR024C-A	KIN4	Q01919	800 aa		11.58	□□□□□ -0.56
LSB3	YFR024C-A	CDC45	Q08032	650 aa		11.58	□□□□□ -0.56
LSB3	YFR024C-A	YLR271W	Q06152	274 aa		11.57	□□□□□ -0.56
LSB3	YFR024C-A	IRC3	Q06683	689 aa		11.57	□□□□□ -0.56
LSB3	YFR024C-A	HAT1	Q12341	374 aa		11.56	□□□□□ -0.56
LSB3	YFR024C-A	SMY1	P32364	656 aa	Known RBP	11.55	□□□□□ -0.56
LSB3	YFR024C-A	CST6	P40535	587 aa		11.55	□□□□□ -0.56

Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms