RNA–Protein interactions for RNA: YFL003C

MSH4, Transcript of Protein involved in meiotic recombination, yeast

Gene MSH4, Length 2,637 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH4	YFL003C	RPL34A	P87262	121 aa	Predicted RBP	4.7	□□□□□ -1.66
MSH4	YFL003C	ORC1	P54784	914 aa	Predicted RBP	4.7	□□□□□ -1.66
MSH4	YFL003C	GCD11	P32481	527 aa	Known RBP	4.69	□□□□□ -1.66
MSH4	YFL003C	ACS2	P52910	683 aa	Known RBP	4.69	□□□□□ -1.66
MSH4	YFL003C	IPL1	P38991	367 aa		4.69	□□□□□ -1.66
MSH4	YFL003C	UBP9	P39967	754 aa		4.68	□□□□□ -1.66
MSH4	YFL003C	SDH2	P21801	266 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	VAC17	P25591	423 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	UBX7	P38349	436 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	ERP5	P38819	212 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	MDJ2	P42834	146 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	YPP1	P46951	817 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	RRP15	Q06511	250 aa	Predicted RBP	4.67	□□□□□ -1.66
MSH4	YFL003C	SUV3	P32580	737 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	BOL3	P39724	118 aa		4.67	□□□□□ -1.66
MSH4	YFL003C	TEC1	P18412	486 aa		4.66	□□□□□ -1.66
MSH4	YFL003C	TPD3	P31383	635 aa		4.66	□□□□□ -1.66
MSH4	YFL003C	PAM1	P37304	830 aa	Known RBP	4.66	□□□□□ -1.66
MSH4	YFL003C	RRN7	P40992	514 aa		4.66	□□□□□ -1.66
MSH4	YFL003C	HXT10	P43581	546 aa		4.66	□□□□□ -1.66
MSH4	YFL003C	NPL4	P33755	580 aa		4.66	□□□□□ -1.66
MSH4	YFL003C	TBF1	Q02457	562 aa		4.66	□□□□□ -1.66
MSH4	YFL003C	YML082W	Q04533	649 aa	Known RBP	4.66	□□□□□ -1.66
MSH4	YFL003C	WHI5	Q12416	295 aa		4.66	□□□□□ -1.66
MSH4	YFL003C	PRT1	P06103	763 aa	Known RBP	4.65	□□□□□ -1.66
MSH4	YFL003C	IXR1	P33417	597 aa		4.65	□□□□□ -1.66
MSH4	YFL003C	YBL113C	Q7M4S9	792 aa		4.65	□□□□□ -1.67
MSH4	YFL003C	ATE1	P16639	503 aa		4.64	□□□□□ -1.67
MSH4	YFL003C	SOH1	P38633	127 aa		4.64	□□□□□ -1.67
MSH4	YFL003C	STE20	Q03497	939 aa	Known RBP	4.64	□□□□□ -1.67
MSH4	YFL003C	ALR1	Q08269	859 aa		4.64	□□□□□ -1.67
MSH4	YFL003C	YEL077C	Q3E7X8	1277 aa		4.64	□□□□□ -1.67
MSH4	YFL003C	BUD31	P25337	157 aa	Predicted RBP	4.64	□□□□□ -1.67
MSH4	YFL003C	PHO87	P25360	923 aa		4.64	□□□□□ -1.67
MSH4	YFL003C	RRD1	P40454	393 aa	Known RBP	4.64	□□□□□ -1.67
MSH4	YFL003C	PUF6	Q04373	656 aa	Known RBP	4.64	□□□□□ -1.67
MSH4	YFL003C	RRN6	P32786	894 aa		4.63	□□□□□ -1.67
MSH4	YFL003C	ALD2	P47771	506 aa		4.63	□□□□□ -1.67
MSH4	YFL003C	UTP13	Q05946	817 aa	Known RBP	4.63	□□□□□ -1.67
MSH4	YFL003C	ENV9	Q08651	330 aa		4.63	□□□□□ -1.67
MSH4	YFL003C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.63	□□□□□ -1.67	not detected
MSH4	YFL003C	ELP4	Q02884	456 aa	Known RBP	4.63	□□□□□ -1.67
MSH4	YFL003C	GUT2	P32191	649 aa		4.62	□□□□□ -1.67
MSH4	YFL003C	SPT23	P35210	1082 aa		4.62	□□□□□ -1.67
MSH4	YFL003C	HEM3	P28789	327 aa		4.62	□□□□□ -1.67
MSH4	YFL003C	KTR2	P33550	425 aa		4.62	□□□□□ -1.67
MSH4	YFL003C	PDI1	P17967	522 aa	Known RBP	4.61	□□□□□ -1.67
MSH4	YFL003C	TSC13	Q99190	310 aa		4.61	□□□□□ -1.67
MSH4	YFL003C	FRT1	Q99332	602 aa		4.61	□□□□□ -1.67
MSH4	YFL003C	MSC6	Q08818	692 aa	Known RBP	4.61	□□□□□ -1.67
MSH4	YFL003C	BOI1	P38041	980 aa	Known RBP	4.6	□□□□□ -1.67
MSH4	YFL003C	PTC2	P39966	464 aa	Known RBP	4.6	□□□□□ -1.67
MSH4	YFL003C	TFG1	P41895	735 aa	Predicted RBP	4.6	□□□□□ -1.67
MSH4	YFL003C	YHL050C	P38721	697 aa		4.6	□□□□□ -1.67
MSH4	YFL003C	YHR219W	P38900	624 aa		4.6	□□□□□ -1.67
MSH4	YFL003C	PNP1	Q05788	311 aa		4.6	□□□□□ -1.67
MSH4	YFL003C	PRE3	P38624	215 aa		4.59	□□□□□ -1.67
MSH4	YFL003C	ISR1	Q06098	443 aa	Known RBP	4.59	□□□□□ -1.67
MSH4	YFL003C	HDA3	Q06623	655 aa		4.59	□□□□□ -1.67
MSH4	YFL003C	GPI13	Q07830	1017 aa		4.59	□□□□□ -1.67
MSH4	YFL003C	HAP4	P14064	554 aa		4.59	□□□□□ -1.68
MSH4	YFL003C	SLD2	P34252	453 aa		4.59	□□□□□ -1.68
MSH4	YFL003C	STB3	Q12427	513 aa		4.59	□□□□□ -1.68
MSH4	YFL003C	KAR5	Q04746	504 aa		4.58	□□□□□ -1.68
MSH4	YFL003C	KXD1	P53158	218 aa		4.58	□□□□□ -1.68
MSH4	YFL003C	MET4	P32389	672 aa		4.57	□□□□□ -1.68
MSH4	YFL003C	AIM9	P40053	627 aa	Known RBP	4.57	□□□□□ -1.68
MSH4	YFL003C	MIP1	P15801	1254 aa		4.57	□□□□□ -1.68
MSH4	YFL003C	STM1	P39015	273 aa	Known RBP	4.57	□□□□□ -1.68
MSH4	YFL003C	ALD4	P46367	519 aa	Known RBP	4.57	□□□□□ -1.68
MSH4	YFL003C	GAS4	Q08271	471 aa		4.57	□□□□□ -1.68
MSH4	YFL003C	MNL2	Q12205	849 aa		4.57	□□□□□ -1.68
MSH4	YFL003C	EMW1	P42842	904 aa	Known RBP	4.56	□□□□□ -1.68
MSH4	YFL003C	ATG1	P53104	897 aa		4.56	□□□□□ -1.68
MSH4	YFL003C	NUT2	Q06213	157 aa		4.56	□□□□□ -1.68
MSH4	YFL003C	PUS5	Q06244	254 aa		4.56	□□□□□ -1.68
MSH4	YFL003C	SRS2	P12954	1174 aa		4.56	□□□□□ -1.68
MSH4	YFL003C	UBP1	P25037	809 aa		4.56	□□□□□ -1.68
MSH4	YFL003C	APP1	P53933	587 aa		4.56	□□□□□ -1.68
MSH4	YFL003C	GRS1	P38088	690 aa	Known RBP	4.55	□□□□□ -1.68
MSH4	YFL003C	QDR1	P40475	563 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	CST6	P40535	587 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	PUN1	Q06991	263 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	ATG20	Q07528	640 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	NTH2	P35172	780 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	PPX1	P38698	397 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	BDP1	P46678	594 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	CAB1	Q04430	367 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	LSO1	Q3E827	93 aa		4.55	□□□□□ -1.68
MSH4	YFL003C	NGR1	P32831	672 aa	Known RBP	4.54	□□□□□ -1.68
MSH4	YFL003C	SWI5	P08153	709 aa		4.54	□□□□□ -1.68
MSH4	YFL003C	SPT16	P32558	1035 aa	Known RBP	4.54	□□□□□ -1.68
MSH4	YFL003C	YBR197C	P38306	217 aa		4.54	□□□□□ -1.68
MSH4	YFL003C	CHL1	P22516	861 aa	Predicted RBP	4.53	□□□□□ -1.68
MSH4	YFL003C	APC11	Q12157	165 aa		4.53	□□□□□ -1.68
MSH4	YFL003C	SNU71	P53207	620 aa	Known RBP	4.53	□□□□□ -1.68
MSH4	YFL003C	ATG3	P40344	310 aa		4.52	□□□□□ -1.69
MSH4	YFL003C	ACF4	P47129	309 aa		4.52	□□□□□ -1.69
MSH4	YFL003C	ISU1	Q03020	165 aa		4.52	□□□□□ -1.69
MSH4	YFL003C	YPQ2	Q06328	317 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 8.5 ms