RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C SLI15P38283 698 aa5.95□□□□□ -1.46
CDC48YDL126C SSF1P38789 453 aaPredicted RBP5.95□□□□□ -1.46
CDC48YDL126C YRB30P53107 440 aaPredicted RBP5.95□□□□□ -1.46
CDC48YDL126C RDS2P19541 446 aaKnown RBP5.94□□□□□ -1.46
CDC48YDL126C CSE4P36012 229 aa5.94□□□□□ -1.46
CDC48YDL126C GYP5Q12344 894 aa5.94□□□□□ -1.46
CDC48YDL126C YDJ1P25491 409 aaKnown RBP5.94□□□□□ -1.46
CDC48YDL126C RTG2P32608 588 aaKnown RBP5.94□□□□□ -1.46
CDC48YDL126C PEP12P32854 288 aa5.94□□□□□ -1.46
CDC48YDL126C KRI1P42846 591 aaKnown RBP5.94□□□□□ -1.46
CDC48YDL126C RIM21P48565 533 aa5.94□□□□□ -1.46
CDC48YDL126C YNL108CP53929 270 aa5.94□□□□□ -1.46
CDC48YDL126C KIC1P38692 1080 aa5.93□□□□□ -1.46
CDC48YDL126C NUP157P40064 1391 aaKnown RBP5.93□□□□□ -1.46
CDC48YDL126C ENO2P00925 437 aaKnown RBP5.93□□□□□ -1.46
CDC48YDL126C ESS1P22696 170 aa5.93□□□□□ -1.46
CDC48YDL126C FAR11P53917 953 aa5.93□□□□□ -1.46
CDC48YDL126C MET10P39692 1035 aa5.92□□□□□ -1.46
CDC48YDL126C ENO1P00924 437 aaKnown RBP5.92□□□□□ -1.46
CDC48YDL126C YBL036CP38197 257 aa5.91□□□□□ -1.46
CDC48YDL126C YPR204WQ08995 1032 aa5.91□□□□□ -1.46
CDC48YDL126C SRB8P25648 1427 aa5.91□□□□□ -1.46
CDC48YDL126C CLB5P30283 435 aa5.91□□□□□ -1.46
CDC48YDL126C TPO2P53283 614 aa5.91□□□□□ -1.46
CDC48YDL126C YOL036WQ08206 761 aa5.9□□□□□ -1.46
CDC48YDL126C DAN4P47179 1161 aa5.89□□□□□ -1.47
CDC48YDL126C IQG1Q12280 1495 aa5.89□□□□□ -1.47
CDC48YDL126C BUD3P25558 1636 aa5.89□□□□□ -1.47
CDC48YDL126C MAK16P10962 306 aaPredicted RBP5.89□□□□□ -1.47
CDC48YDL126C YPR109WQ06104 294 aa5.89□□□□□ -1.47
CDC48YDL126C RRP15Q06511 250 aaPredicted RBP5.89□□□□□ -1.47
CDC48YDL126C CDC73Q06697 393 aa5.89□□□□□ -1.47
CDC48YDL126C MMP1Q12372 583 aa5.89□□□□□ -1.47
CDC48YDL126C LTE1P07866 1435 aa5.89□□□□□ -1.47
CDC48YDL126C CSC1Q06538 782 aa5.88□□□□□ -1.47
CDC48YDL126C SPC42P36094 363 aa5.88□□□□□ -1.47
CDC48YDL126C TIF4632P39936 914 aaKnown RBP5.88□□□□□ -1.47
CDC48YDL126C PKH3Q03306 898 aaPredicted RBP5.88□□□□□ -1.47
CDC48YDL126C CDC3P32457 520 aaKnown RBP5.87□□□□□ -1.47
CDC48YDL126C DCW1P36091 449 aa5.87□□□□□ -1.47
CDC48YDL126C GCN2P15442 1659 aa5.87□□□□□ -1.47
CDC48YDL126C TGL4P36165 910 aa5.86□□□□□ -1.47
CDC48YDL126C TPS3P38426 1054 aaKnown RBP5.86□□□□□ -1.47
CDC48YDL126C JSN1P47135 1091 aaKnown RBP RIP-Chip data5.86□□□□□ -1.47not detected
CDC48YDL126C OCA5P38738 679 aa5.86□□□□□ -1.47
CDC48YDL126C TRL1P09880 827 aaKnown RBP5.85□□□□□ -1.47
CDC48YDL126C MMS1Q06211 1407 aa5.85□□□□□ -1.47
CDC48YDL126C YSP2Q06681 1438 aa5.85□□□□□ -1.47
CDC48YDL126C DOP1Q03921 1698 aa5.85□□□□□ -1.47
CDC48YDL126C RRN6P32786 894 aa5.84□□□□□ -1.47
CDC48YDL126C DOS2P54858 310 aa5.84□□□□□ -1.47
CDC48YDL126C CHC1P22137 1653 aaKnown RBP5.83□□□□□ -1.48
CDC48YDL126C TFB4Q12004 338 aa5.83□□□□□ -1.48
CDC48YDL126C TRM3Q07527 1436 aa5.83□□□□□ -1.48
CDC48YDL126C YEL023CP39992 682 aa5.83□□□□□ -1.48
CDC48YDL126C NUG1P40010 520 aaKnown RBP5.83□□□□□ -1.48
CDC48YDL126C CWC22P53333 577 aaKnown RBP5.83□□□□□ -1.48
CDC48YDL126C SPT5P27692 1063 aaKnown RBP5.82□□□□□ -1.48
CDC48YDL126C SET4P42948 560 aa5.82□□□□□ -1.48
CDC48YDL126C MDG1P53885 366 aa5.82□□□□□ -1.48
CDC48YDL126C HTA1P04911 132 aaKnown RBP5.82□□□□□ -1.48
CDC48YDL126C HTA2P04912 132 aa5.82□□□□□ -1.48
CDC48YDL126C HAT1Q12341 374 aa5.82□□□□□ -1.48
CDC48YDL126C HEM3P28789 327 aa5.81□□□□□ -1.48
CDC48YDL126C RPL34BP40525 121 aaKnown RBP5.81□□□□□ -1.48
CDC48YDL126C IPL1P38991 367 aa5.81□□□□□ -1.48
CDC48YDL126C DRS2P39524 1355 aa5.81□□□□□ -1.48
CDC48YDL126C APL6P46682 809 aa5.8□□□□□ -1.48
CDC48YDL126C ERF2Q06551 359 aa5.8□□□□□ -1.48
CDC48YDL126C YOR093CQ12275 1648 aa5.8□□□□□ -1.48
CDC48YDL126C CWC15Q03772 175 aaKnown RBP5.8□□□□□ -1.48
CDC48YDL126C AGE1Q04412 482 aa5.8□□□□□ -1.48
CDC48YDL126C BUD21Q08492 214 aaPredicted RBP5.8□□□□□ -1.48
CDC48YDL126C ARG8P18544 423 aa5.79□□□□□ -1.48
CDC48YDL126C NAF1P53919 492 aaKnown RBP5.79□□□□□ -1.48
CDC48YDL126C YPR084WQ06821 456 aa5.79□□□□□ -1.48
CDC48YDL126C TUM1Q08686 304 aaKnown RBP5.79□□□□□ -1.48
CDC48YDL126C BNR1P40450 1375 aa5.79□□□□□ -1.48
CDC48YDL126C ALD2P47771 506 aa5.79□□□□□ -1.48
CDC48YDL126C RTF1P53064 558 aa5.79□□□□□ -1.48
CDC48YDL126C MSB4Q12317 492 aa5.79□□□□□ -1.48
CDC48YDL126C SEC7P11075 2009 aaKnown RBP5.79□□□□□ -1.48
CDC48YDL126C RPL34AP87262 121 aaPredicted RBP5.78□□□□□ -1.48
CDC48YDL126C ATE1P16639 503 aa5.78□□□□□ -1.48
CDC48YDL126C PTC4P38089 393 aa5.78□□□□□ -1.48
CDC48YDL126C BUB1P41695 1021 aaKnown RBP RIP-Chip data5.78□□□□□ -1.48not detected
CDC48YDL126C YMR196WQ04336 1088 aa5.78□□□□□ -1.48
CDC48YDL126C WHI5Q12416 295 aa5.78□□□□□ -1.48
CDC48YDL126C TRM1P15565 570 aaKnown RBP5.77□□□□□ -1.49
CDC48YDL126C MDJ2P42834 146 aa5.77□□□□□ -1.49
CDC48YDL126C ERP5P38819 212 aa5.77□□□□□ -1.49
CDC48YDL126C YNL115CP53925 644 aa5.77□□□□□ -1.49
CDC48YDL126C MCM16Q12262 181 aa5.77□□□□□ -1.49
CDC48YDL126C PDR5P33302 1511 aaKnown RBP5.76□□□□□ -1.49
CDC48YDL126C SLD2P34252 453 aa5.76□□□□□ -1.49
CDC48YDL126C GIN4Q12263 1142 aa5.76□□□□□ -1.49
CDC48YDL126C BNI1P41832 1953 aa5.76□□□□□ -1.49
CDC48YDL126C SLY41P22215 453 aa5.76□□□□□ -1.49
CDC48YDL126C MID1P41821 548 aa5.75□□□□□ -1.49
CDC48YDL126C MPC54Q08550 464 aa5.75□□□□□ -1.49
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms