RNA–Protein interactions for RNA: YAL043C

PTA1, Transcript of Subunit of holo-CPF, yeast

Gene PTA1, Length 2,358 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PTA1	YAL043C	YGL081W	P53156	320 aa		5.02	□□□□□ -1.61
PTA1	YAL043C	RPS24A	P0CX31	135 aa	Known RBP	5.01	□□□□□ -1.61
PTA1	YAL043C	RPS24B	P0CX32	135 aa	Known RBP	5.01	□□□□□ -1.61
PTA1	YAL043C	PRD1	P25375	712 aa		5.01	□□□□□ -1.61
PTA1	YAL043C	RLF2	Q12495	606 aa		5.01	□□□□□ -1.61
PTA1	YAL043C	POL32	P47110	350 aa		5.01	□□□□□ -1.61
PTA1	YAL043C	RPP0	P05317	312 aa	Known RBP	5	□□□□□ -1.61
PTA1	YAL043C	STS1	P38637	319 aa		5	□□□□□ -1.61
PTA1	YAL043C	YIL092W	P40497	633 aa		5	□□□□□ -1.61
PTA1	YAL043C	ILV3	P39522	585 aa	Known RBP	5	□□□□□ -1.61
PTA1	YAL043C	DPS1	P04802	557 aa	Known RBP	4.99	□□□□□ -1.61
PTA1	YAL043C	BCK1	Q01389	1478 aa		4.98	□□□□□ -1.61
PTA1	YAL043C	TIF11	P38912	153 aa	Known RBP	4.98	□□□□□ -1.61
PTA1	YAL043C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
PTA1	YAL043C	PDI1	P17967	522 aa	Known RBP	4.98	□□□□□ -1.61
PTA1	YAL043C	TRM3	Q07527	1436 aa		4.97	□□□□□ -1.61
PTA1	YAL043C	TRP5	P00931	707 aa	Known RBP	4.97	□□□□□ -1.61
PTA1	YAL043C	PCT1	P13259	424 aa		4.97	□□□□□ -1.61
PTA1	YAL043C	LEU2	P04173	364 aa	Predicted RBP	4.97	□□□□□ -1.61
PTA1	YAL043C	VMA1	P17255	1071 aa	Known RBP	4.97	□□□□□ -1.61
PTA1	YAL043C	RRT14	P40470	206 aa		4.97	□□□□□ -1.61
PTA1	YAL043C	HEF3	P53978	1044 aa	Known RBP	4.97	□□□□□ -1.61
PTA1	YAL043C	RPS0B	P46654	252 aa	Known RBP	4.96	□□□□□ -1.62
PTA1	YAL043C	YGR122W	P53272	402 aa		4.96	□□□□□ -1.62
PTA1	YAL043C	SCT1	P32784	759 aa		4.95	□□□□□ -1.62
PTA1	YAL043C	KRI1	P42846	591 aa	Known RBP	4.95	□□□□□ -1.62
PTA1	YAL043C	CPS1	P27614	576 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	SET4	P42948	560 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	ULI1	P43604	169 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	RTF1	P53064	558 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	SPO1	P53541	631 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	MSB4	Q12317	492 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	AUS1	Q08409	1394 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	RAM2	P29703	316 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	RFC1	P38630	861 aa	Known RBP	4.94	□□□□□ -1.62
PTA1	YAL043C	YOL036W	Q08206	761 aa		4.94	□□□□□ -1.62
PTA1	YAL043C	SNF7	P39929	240 aa	Known RBP	4.93	□□□□□ -1.62
PTA1	YAL043C	RMD1	Q03441	430 aa		4.93	□□□□□ -1.62
PTA1	YAL043C	SNF2	P22082	1703 aa		4.93	□□□□□ -1.62
PTA1	YAL043C	SWC3	P31376	625 aa		4.93	□□□□□ -1.62
PTA1	YAL043C	EAP1	P36041	632 aa	Known RBP	4.93	□□□□□ -1.62
PTA1	YAL043C	ROX1	P25042	368 aa		4.92	□□□□□ -1.62
PTA1	YAL043C	AKL1	P38080	1108 aa	Known RBP	4.92	□□□□□ -1.62
PTA1	YAL043C	DSD1	P53095	428 aa		4.92	□□□□□ -1.62
PTA1	YAL043C	SAM3	Q08986	587 aa		4.92	□□□□□ -1.62
PTA1	YAL043C	HSP104	P31539	908 aa	Known RBP	4.92	□□□□□ -1.62
PTA1	YAL043C	SLN1	P39928	1220 aa	Predicted RBP	4.92	□□□□□ -1.62
PTA1	YAL043C	CSI1	Q04368	295 aa		4.92	□□□□□ -1.62
PTA1	YAL043C	MAK21	Q12176	1025 aa	Known RBP	4.92	□□□□□ -1.62
PTA1	YAL043C	MAK11	P20484	414 aa	Known RBP	4.91	□□□□□ -1.62
PTA1	YAL043C	NMD2	P38798	1089 aa	Known RBP	4.91	□□□□□ -1.62
PTA1	YAL043C	YNR029C	P53729	429 aa	Known RBP	4.91	□□□□□ -1.62
PTA1	YAL043C	NKP2	Q06162	153 aa		4.91	□□□□□ -1.62
PTA1	YAL043C	BNI1	P41832	1953 aa		4.91	□□□□□ -1.62
PTA1	YAL043C	ABP1	P15891	592 aa	Known RBP	4.91	□□□□□ -1.62
PTA1	YAL043C	YNG2	P38806	282 aa	Known RBP	4.91	□□□□□ -1.62
PTA1	YAL043C	MTR4	P47047	1073 aa	Known RBP	4.91	□□□□□ -1.62
PTA1	YAL043C	SRT1	Q03175	343 aa		4.9	□□□□□ -1.62
PTA1	YAL043C	TAP42	Q04372	366 aa		4.9	□□□□□ -1.62
PTA1	YAL043C	MIF2	P35201	549 aa		4.9	□□□□□ -1.63
PTA1	YAL043C	MNN4	P36044	1178 aa		4.9	□□□□□ -1.63
PTA1	YAL043C	BRN1	P38170	754 aa		4.9	□□□□□ -1.63
PTA1	YAL043C	LEO1	P38439	464 aa		4.9	□□□□□ -1.63
PTA1	YAL043C	ZDS1	P50111	915 aa	Known RBP	4.9	□□□□□ -1.63
PTA1	YAL043C	LDB19	Q12502	818 aa		4.9	□□□□□ -1.63
PTA1	YAL043C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
PTA1	YAL043C	BDP1	P46678	594 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	ENT3	P47160	408 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	HXT17	P53631	564 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	ZDS2	P54786	942 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	BMS1	Q08965	1183 aa	Known RBP	4.89	□□□□□ -1.63
PTA1	YAL043C	IOC2	Q12072	812 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	GYP5	Q12344	894 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	GRX4	P32642	244 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	VPS24	P36095	224 aa	Known RBP	4.89	□□□□□ -1.63
PTA1	YAL043C	ARL1	P38116	183 aa	Known RBP	4.89	□□□□□ -1.63
PTA1	YAL043C	HXT13	P39924	564 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	ITC1	P53125	1264 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	MAK10	Q02197	733 aa		4.89	□□□□□ -1.63
PTA1	YAL043C	PSK1	P31374	1356 aa		4.88	□□□□□ -1.63
PTA1	YAL043C	SLA1	P32790	1244 aa		4.88	□□□□□ -1.63
PTA1	YAL043C	DLD1	P32891	587 aa		4.88	□□□□□ -1.63
PTA1	YAL043C	GYP7	P48365	746 aa		4.88	□□□□□ -1.63
PTA1	YAL043C	COQ4	O13525	335 aa		4.87	□□□□□ -1.63
PTA1	YAL043C	RAD24	P32641	659 aa		4.87	□□□□□ -1.63
PTA1	YAL043C	SRS2	P12954	1174 aa		4.87	□□□□□ -1.63
PTA1	YAL043C	MSP1	P28737	362 aa		4.87	□□□□□ -1.63
PTA1	YAL043C	KNS1	P32350	737 aa	Predicted RBP	4.87	□□□□□ -1.63
PTA1	YAL043C	NOP8	Q08287	484 aa	Predicted RBP	4.87	□□□□□ -1.63
PTA1	YAL043C	DMA1	P38823	416 aa		4.86	□□□□□ -1.63
PTA1	YAL043C	YIR014W	P40570	242 aa		4.86	□□□□□ -1.63
PTA1	YAL043C	YPP1	P46951	817 aa		4.86	□□□□□ -1.63
PTA1	YAL043C	MDG1	P53885	366 aa		4.86	□□□□□ -1.63
PTA1	YAL043C	VAS1	P07806	1104 aa	Known RBP	4.85	□□□□□ -1.63
PTA1	YAL043C	NTH2	P35172	780 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	DCW1	P36091	449 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	NPA3	P47122	385 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	TEA1	P47988	759 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	VPS20	Q04272	221 aa		4.85	□□□□□ -1.63
PTA1	YAL043C	AIR2	Q12476	344 aa	Known RBP	4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms