RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 ADAMTSL3P82987 1691 aa25.56■■□□□ 1.68
CLN3-256ENST00000637107 HFM1A2PYH4 1435 aa25.54■■□□□ 1.68
CLN3-256ENST00000637107 MADDQ8WXG6 1647 aa25.53■■□□□ 1.68
CLN3-256ENST00000637107 GCC2Q8IWJ2 1684 aa25.52■■□□□ 1.68
CLN3-256ENST00000637107 RNF17Q9BXT8 1623 aaKnown RBP25.51■■□□□ 1.67
CLN3-256ENST00000637107 FER1L4A9Z1Z3 1794 aa25.5■■□□□ 1.67
CLN3-256ENST00000637107 MROH1Q8NDA8 1641 aa25.5■■□□□ 1.67
CLN3-256ENST00000637107 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.48■■□□□ 1.67
CLN3-256ENST00000637107 DEPDC5O75140 1603 aa25.47■■□□□ 1.67
CLN3-256ENST00000637107 RIMS1Q86UR5 1692 aaKnown RBP25.46■■□□□ 1.67
CLN3-256ENST00000637107 ESF1Q9H501 851 aaKnown RBP25.44■■□□□ 1.66
CLN3-256ENST00000637107 PRDM15P57071 1507 aaPredicted RBP25.44■■□□□ 1.66
CLN3-256ENST00000637107 PPP6R1Q9UPN7 881 aa25.43■■□□□ 1.66
CLN3-256ENST00000637107 CLTCQ00610 1675 aaKnown RBP25.43■■□□□ 1.66
CLN3-256ENST00000637107 WASHC2CQ9Y4E1 1318 aa25.43■■□□□ 1.66
CLN3-256ENST00000637107 SETD5Q9C0A6 1442 aa25.41■■□□□ 1.66
CLN3-256ENST00000637107 KDM5DQ9BY66 1539 aa25.4■■□□□ 1.66
CLN3-256ENST00000637107 UNC13BO14795 1591 aa25.4■■□□□ 1.66
CLN3-256ENST00000637107 PLPPR3Q6T4P5 718 aa25.39■■□□□ 1.66
CLN3-256ENST00000637107 PTPRMP28827 1452 aa25.39■■□□□ 1.66
CLN3-256ENST00000637107 CEP152O94986 1710 aa25.39■■□□□ 1.65
CLN3-256ENST00000637107 CEBPAP49715 358 aaPredicted RBP25.38■■□□□ 1.65
CLN3-256ENST00000637107 ABCC3O15438 1527 aa25.38■■□□□ 1.65
CLN3-256ENST00000637107 CNTLNQ9NXG0 1405 aa25.38■■□□□ 1.65
CLN3-256ENST00000637107 VWDEQ8N2E2 1590 aa25.37■■□□□ 1.65
CLN3-256ENST00000637107 KANK1Q14678 1352 aa25.37■■□□□ 1.65
CLN3-256ENST00000637107 DHX57Q6P158 1386 aaKnown RBP25.37■■□□□ 1.65
CLN3-256ENST00000637107 ZMYM3Q14202 1370 aa25.36■■□□□ 1.65
CLN3-256ENST00000637107 NUP155O75694 1391 aa25.35■■□□□ 1.65
CLN3-256ENST00000637107 RAB3GAP2Q9H2M9 1393 aa25.35■■□□□ 1.65
CLN3-256ENST00000637107 ZC3H13Q5T200 1668 aaKnown RBP25.35■■□□□ 1.65
CLN3-256ENST00000637107 FAM135AQ9P2D6 1515 aa25.35■■□□□ 1.65
CLN3-256ENST00000637107 MROH2AA6NES4 1674 aa25.34■■□□□ 1.65
CLN3-256ENST00000637107 C3P01024 1663 aa25.33■■□□□ 1.65
CLN3-256ENST00000637107 CLSPNQ9HAW4 1339 aa25.32■■□□□ 1.64
CLN3-256ENST00000637107 TRIM52Q96A61 297 aa25.32■■□□□ 1.64
CLN3-256ENST00000637107 CAMSAP1Q5T5Y3 1602 aa25.3■■□□□ 1.64
CLN3-256ENST00000637107 IQGAP3Q86VI3 1631 aa25.3■■□□□ 1.64
CLN3-256ENST00000637107 LMTK2Q8IWU2 1503 aa25.29■■□□□ 1.64
CLN3-256ENST00000637107 CFAP65Q6ZU64 1925 aaKnown RBP25.26■■□□□ 1.63
CLN3-256ENST00000637107 FBXO31Q5XUX0 539 aaPredicted RBP25.25■■□□□ 1.63
CLN3-256ENST00000637107 PZPP20742 1482 aa25.24■■□□□ 1.63
CLN3-256ENST00000637107 NPATQ14207 1427 aa25.24■■□□□ 1.63
CLN3-256ENST00000637107 TET3O43151 1660 aa25.24■■□□□ 1.63
CLN3-256ENST00000637107 EFCAB6Q5THR3 1501 aa25.23■■□□□ 1.63
CLN3-256ENST00000637107 ARHGAP31Q2M1Z3 1444 aa25.22■■□□□ 1.63
CLN3-256ENST00000637107 AEBP2Q6ZN18 517 aaPredicted RBP25.2■■□□□ 1.62
CLN3-256ENST00000637107 SLC4A1APQ9BWU0 796 aaKnown RBP25.2■■□□□ 1.62
CLN3-256ENST00000637107 E9PCH4 1651 aa25.19■■□□□ 1.62
CLN3-256ENST00000637107 ZNF316A6NFI3 1004 aaPredicted RBP25.18■■□□□ 1.62
CLN3-256ENST00000637107 MPHOSPH9Q99550 1183 aa25.16■■□□□ 1.62
CLN3-256ENST00000637107 PREX1Q8TCU6 1659 aa25.16■■□□□ 1.62
CLN3-256ENST00000637107 ERVK-7P63135 1459 aa25.16■■□□□ 1.62
CLN3-256ENST00000637107 ACIN1Q9UKV3 1341 aaKnown RBP25.14■■□□□ 1.62
CLN3-256ENST00000637107 PKD2Q13563 968 aa25.14■■□□□ 1.62
CLN3-256ENST00000637107 SPATA31D1Q6ZQQ2 1576 aa25.14■■□□□ 1.62
CLN3-256ENST00000637107 RPRD2Q5VT52 1461 aaKnown RBP25.14■■□□□ 1.62
CLN3-256ENST00000637107 SETD1BQ9UPS6 1966 aaKnown RBP25.14■■□□□ 1.61
CLN3-256ENST00000637107 FOXD1Q16676 465 aa25.12■■□□□ 1.61
CLN3-256ENST00000637107 DIEXFQ68CQ4 756 aaKnown RBP25.12■■□□□ 1.61
CLN3-256ENST00000637107 TNRQ92752 1358 aa25.11■■□□□ 1.61
CLN3-256ENST00000637107 NOS1P29475 1434 aa25.1■■□□□ 1.61
CLN3-256ENST00000637107 SYNMO15061 1565 aa25.08■■□□□ 1.6
CLN3-256ENST00000637107 MYO3AQ8NEV4 1616 aa25.07■■□□□ 1.6
CLN3-256ENST00000637107 UHRF1BP1Q6BDS2 1440 aa25.04■■□□□ 1.6
CLN3-256ENST00000637107 SPHKAPQ2M3C7 1700 aa25.04■■□□□ 1.6
CLN3-256ENST00000637107 PTPRTO14522 1441 aa25.03■■□□□ 1.6
CLN3-256ENST00000637107 LMTK3Q96Q04 1460 aa25.03■■□□□ 1.6
CLN3-256ENST00000637107 UGGT1Q9NYU2 1555 aa25.02■■□□□ 1.6
CLN3-256ENST00000637107 PLA2R1Q13018 1463 aa25.02■■□□□ 1.6
CLN3-256ENST00000637107 IDI1Q13907 227 aa25.02■■□□□ 1.6
CLN3-256ENST00000637107 NLRP1Q9C000 1473 aa25■■□□□ 1.59
CLN3-256ENST00000637107 CEP170BQ9Y4F5 1589 aaPredicted RBP25■■□□□ 1.59
CLN3-256ENST00000637107 A2ML1A8K2U0 1454 aa24.97■■□□□ 1.59
CLN3-256ENST00000637107 ZNF142P52746 1687 aaPredicted RBP24.97■■□□□ 1.59
CLN3-256ENST00000637107 SLC52A1Q9NWF4 448 aa24.97■■□□□ 1.59
CLN3-256ENST00000637107 TRPM2O94759 1503 aa24.97■■□□□ 1.59
CLN3-256ENST00000637107 PIK3C2BO00750 1634 aa24.97■■□□□ 1.59
CLN3-256ENST00000637107 HSPA2P54652 639 aa24.96■■□□□ 1.59
CLN3-256ENST00000637107 CLTCL1P53675 1640 aa24.93■■□□□ 1.58
CLN3-256ENST00000637107 UBR1Q8IWV7 1749 aa24.91■■□□□ 1.58
CLN3-256ENST00000637107 ANKRD30BQ9BXX2 1392 aa24.9■■□□□ 1.58
CLN3-256ENST00000637107 STAG3Q9UJ98 1225 aa24.9■■□□□ 1.58
CLN3-256ENST00000637107 CHGAP10645 457 aaKnown RBP24.89■■□□□ 1.58
CLN3-256ENST00000637107 MYO5BQ9ULV0 1848 aa24.88■■□□□ 1.57
CLN3-256ENST00000637107 CCDC144AA2RUR9 1427 aa24.87■■□□□ 1.57
CLN3-256ENST00000637107 TMEM131LA2VDJ0 1609 aa24.87■■□□□ 1.57
CLN3-256ENST00000637107 ADGRB3O60242 1522 aa24.87■■□□□ 1.57
CLN3-256ENST00000637107 THEMISQ8N1K5 641 aaPredicted RBP24.86■■□□□ 1.57
CLN3-256ENST00000637107 KDM5AP29375 1690 aaKnown RBP24.85■■□□□ 1.57
CLN3-256ENST00000637107 KIF1BO60333 1816 aa24.83■■□□□ 1.57
CLN3-256ENST00000637107 TMEM2Q9UHN6 1383 aa24.79■■□□□ 1.56
CLN3-256ENST00000637107 SIN3AQ96ST3 1273 aa24.78■■□□□ 1.56
CLN3-256ENST00000637107 STRCQ7RTU9 1775 aa24.77■■□□□ 1.56
CLN3-256ENST00000637107 SLIT1O75093 1534 aa24.77■■□□□ 1.56
CLN3-256ENST00000637107 ARHGAP23Q9P227 1491 aa24.77■■□□□ 1.56
CLN3-256ENST00000637107 NCKAP5LQ9HCH0 1330 aa24.77■■□□□ 1.56
CLN3-256ENST00000637107 ZNF326Q5BKZ1 582 aaKnown RBP24.76■■□□□ 1.55
CLN3-256ENST00000637107 LTKP29376 864 aa24.75■■□□□ 1.55
CLN3-256ENST00000637107 RGL3Q3MIN7 710 aa24.75■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms