RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DHX29Q7Z478 1369 aaKnown RBP24.34■■□□□ 1.49
CLN3-252ENST00000636907 RAPGEF3O95398 923 aa24.34■■□□□ 1.49
CLN3-252ENST00000636907 RICTORQ6R327 1708 aa24.34■■□□□ 1.49
CLN3-252ENST00000636907 PPP1R15AO75807 674 aaPredicted RBP24.34■■□□□ 1.49
CLN3-252ENST00000636907 ZNF316A6NFI3 1004 aaPredicted RBP24.33■■□□□ 1.49
CLN3-252ENST00000636907 EIF2AK4Q9P2K8 1649 aaKnown RBP24.32■■□□□ 1.48
CLN3-252ENST00000636907 DEPDC5O75140 1603 aa24.31■■□□□ 1.48
CLN3-252ENST00000636907 TEX14Q8IWB6 1497 aa24.31■■□□□ 1.48
CLN3-252ENST00000636907 ABCA6Q8N139 1617 aa24.29■■□□□ 1.48
CLN3-252ENST00000636907 A2MP01023 1474 aa24.29■■□□□ 1.48
CLN3-252ENST00000636907 FRMPD1Q5SYB0 1578 aa24.28■■□□□ 1.48
CLN3-252ENST00000636907 KIF3BO15066 747 aa24.25■■□□□ 1.47
CLN3-252ENST00000636907 MROH1Q8NDA8 1641 aa24.24■■□□□ 1.47
CLN3-252ENST00000636907 DIP2CQ9Y2E4 1556 aa24.23■■□□□ 1.47
CLN3-252ENST00000636907 VWDEQ8N2E2 1590 aa24.22■■□□□ 1.47
CLN3-252ENST00000636907 PRDM15P57071 1507 aaPredicted RBP24.22■■□□□ 1.47
CLN3-252ENST00000636907 L3MBTL2Q969R5 705 aa24.22■■□□□ 1.47
CLN3-252ENST00000636907 ZMYM4Q5VZL5 1548 aa24.21■■□□□ 1.47
CLN3-252ENST00000636907 KANK1Q14678 1352 aa24.19■■□□□ 1.46
CLN3-252ENST00000636907 RNF17Q9BXT8 1623 aaKnown RBP24.19■■□□□ 1.46
CLN3-252ENST00000636907 YEATS2Q9ULM3 1422 aa24.18■■□□□ 1.46
CLN3-252ENST00000636907 PLA2R1Q13018 1463 aa24.18■■□□□ 1.46
CLN3-252ENST00000636907 BCORL1Q5H9F3 1711 aa24.17■■□□□ 1.46
CLN3-252ENST00000636907 E9PCH4 1651 aa24.16■■□□□ 1.46
CLN3-252ENST00000636907 TET3O43151 1660 aa24.16■■□□□ 1.46
CLN3-252ENST00000636907 ATP10AO60312 1499 aa24.14■■□□□ 1.46
CLN3-252ENST00000636907 CCDC144AA2RUR9 1427 aa24.12■■□□□ 1.45
CLN3-252ENST00000636907 COL17A1Q9UMD9 1497 aaPredicted RBP24.12■■□□□ 1.45
CLN3-252ENST00000636907 LMTK2Q8IWU2 1503 aa24.09■■□□□ 1.45
CLN3-252ENST00000636907 CEP152O94986 1710 aa24.08■■□□□ 1.45
CLN3-252ENST00000636907 DNAJC5Q9H3Z4 198 aa24.08■■□□□ 1.44
CLN3-252ENST00000636907 EFCAB6Q5THR3 1501 aa24.06■■□□□ 1.44
CLN3-252ENST00000636907 DIEXFQ68CQ4 756 aaKnown RBP24.06■■□□□ 1.44
CLN3-252ENST00000636907 GGT6Q6P531 493 aa24.06■■□□□ 1.44
CLN3-252ENST00000636907 SPHKAPQ2M3C7 1700 aa24.06■■□□□ 1.44
CLN3-252ENST00000636907 NBPF8Q3BBV2 869 aa24.05■■□□□ 1.44
CLN3-252ENST00000636907 TRPM2O94759 1503 aa24.05■■□□□ 1.44
CLN3-252ENST00000636907 PTPRTO14522 1441 aa24.05■■□□□ 1.44
CLN3-252ENST00000636907 REREQ9P2R6 1566 aa24.01■■□□□ 1.43
CLN3-252ENST00000636907 ABCC3O15438 1527 aa24.01■■□□□ 1.43
CLN3-252ENST00000636907 ARHGEF40Q8TER5 1519 aa23.98■■□□□ 1.43
CLN3-252ENST00000636907 WASHC2CQ9Y4E1 1318 aa23.97■■□□□ 1.43
CLN3-252ENST00000636907 UHRF1BP1Q6BDS2 1440 aa23.97■■□□□ 1.43
CLN3-252ENST00000636907 CLTCL1P53675 1640 aa23.97■■□□□ 1.43
CLN3-252ENST00000636907 CAMSAP1Q5T5Y3 1602 aa23.96■■□□□ 1.43
CLN3-252ENST00000636907 AGLP35573 1532 aa23.95■■□□□ 1.42
CLN3-252ENST00000636907 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
CLN3-252ENST00000636907 DCAF11Q8TEB1 546 aa23.95■■□□□ 1.42
CLN3-252ENST00000636907 HIRIP3Q9BW71 556 aaPredicted RBP23.95■■□□□ 1.42
CLN3-252ENST00000636907 NPATQ14207 1427 aa23.95■■□□□ 1.42
CLN3-252ENST00000636907 ZC3H13Q5T200 1668 aaKnown RBP23.94■■□□□ 1.42
CLN3-252ENST00000636907 RGL3Q3MIN7 710 aa23.94■■□□□ 1.42
CLN3-252ENST00000636907 SPATA31E1Q6ZUB1 1445 aa23.94■■□□□ 1.42
CLN3-252ENST00000636907 ZNF326Q5BKZ1 582 aaKnown RBP23.93■■□□□ 1.42
CLN3-252ENST00000636907 SIGLEC1Q9BZZ2 1709 aa23.93■■□□□ 1.42
CLN3-252ENST00000636907 KDM2AQ9Y2K7 1162 aa23.92■■□□□ 1.42
CLN3-252ENST00000636907 UGGT1Q9NYU2 1555 aa23.9■■□□□ 1.42
CLN3-252ENST00000636907 HSPA5P11021 654 aaKnown RBP23.88■■□□□ 1.41
CLN3-252ENST00000636907 RALGAPBQ86X10 1494 aa23.87■■□□□ 1.41
CLN3-252ENST00000636907 EIF4G2P78344 907 aaKnown RBP eCLIP23.87■■□□□ 1.411e-9■■■■□ 22.4
CLN3-252ENST00000636907 ARHGAP31Q2M1Z3 1444 aa23.86■■□□□ 1.41
CLN3-252ENST00000636907 PRAG1Q86YV5 1406 aa23.86■■□□□ 1.41
CLN3-252ENST00000636907 CNTLNQ9NXG0 1405 aa23.85■■□□□ 1.41
CLN3-252ENST00000636907 NEURL4Q96JN8 1562 aa23.85■■□□□ 1.41
CLN3-252ENST00000636907 CFAP65Q6ZU64 1925 aaKnown RBP23.84■■□□□ 1.41
CLN3-252ENST00000636907 NOS1P29475 1434 aa23.83■■□□□ 1.41
CLN3-252ENST00000636907 KIF1BO60333 1816 aa23.82■■□□□ 1.4
CLN3-252ENST00000636907 TRPM1Q7Z4N2 1603 aa23.81■■□□□ 1.4
CLN3-252ENST00000636907 PPP6R1Q9UPN7 881 aa23.8■■□□□ 1.4
CLN3-252ENST00000636907 SYNMO15061 1565 aa23.79■■□□□ 1.4
CLN3-252ENST00000636907 MROH2AA6NES4 1674 aa23.79■■□□□ 1.4
CLN3-252ENST00000636907 MLECQ14165 292 aa23.78■■□□□ 1.4
CLN3-252ENST00000636907 ADGRB3O60242 1522 aa23.77■■□□□ 1.4
CLN3-252ENST00000636907 CLTCQ00610 1675 aaKnown RBP23.77■■□□□ 1.4
CLN3-252ENST00000636907 PIK3C2BO00750 1634 aa23.76■■□□□ 1.39
CLN3-252ENST00000636907 USP47Q96K76 1375 aa23.76■■□□□ 1.39
CLN3-252ENST00000636907 PREX1Q8TCU6 1659 aa23.76■■□□□ 1.39
CLN3-252ENST00000636907 MADDQ8WXG6 1647 aa23.75■■□□□ 1.39
CLN3-252ENST00000636907 CARD11Q9BXL7 1154 aa23.75■■□□□ 1.39
CLN3-252ENST00000636907 ROCK2O75116 1388 aaKnown RBP23.74■■□□□ 1.39
CLN3-252ENST00000636907 STAC3Q96MF2 364 aa23.73■■□□□ 1.39
CLN3-252ENST00000636907 DDX10Q13206 875 aaKnown RBP23.72■■□□□ 1.39
CLN3-252ENST00000636907 IFT172Q9UG01 1749 aa23.71■■□□□ 1.39
CLN3-252ENST00000636907 CHGAP10645 457 aaKnown RBP23.7■■□□□ 1.39
CLN3-252ENST00000636907 MIER1Q8N108 512 aa23.7■■□□□ 1.39
CLN3-252ENST00000636907 GPRASP1Q5JY77 1395 aa23.7■■□□□ 1.38
CLN3-252ENST00000636907 NBPF1Q3BBV0 1214 aa23.7■■□□□ 1.38
CLN3-252ENST00000636907 ARID4BQ4LE39 1312 aaPredicted RBP23.7■■□□□ 1.38
CLN3-252ENST00000636907 MYOM2P54296 1465 aa23.69■■□□□ 1.38
CLN3-252ENST00000636907 ERVK-7P63135 1459 aa23.69■■□□□ 1.38
CLN3-252ENST00000636907 LAMC1P11047 1609 aa23.68■■□□□ 1.38
CLN3-252ENST00000636907 FBXO31Q5XUX0 539 aaPredicted RBP23.68■■□□□ 1.38
CLN3-252ENST00000636907 WASHC2AQ641Q2 1341 aa23.68■■□□□ 1.38
CLN3-252ENST00000636907 C11orf95C9JLR9 678 aaPredicted RBP23.66■■□□□ 1.38
CLN3-252ENST00000636907 SLC52A1Q9NWF4 448 aa23.66■■□□□ 1.38
CLN3-252ENST00000636907 IDI1Q13907 227 aa23.65■■□□□ 1.38
CLN3-252ENST00000636907 PPLO60437 1756 aa23.64■■□□□ 1.37
CLN3-252ENST00000636907 ESF1Q9H501 851 aaKnown RBP23.64■■□□□ 1.37
CLN3-252ENST00000636907 SPATA31D1Q6ZQQ2 1576 aa23.63■■□□□ 1.37
CLN3-252ENST00000636907 POLR1AO95602 1720 aaPredicted RBP23.62■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms