RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 COL17A1Q9UMD9 1497 aaPredicted RBP16.77■□□□□ 0.28
LINC00538-201ENST00000626109 SHANK2Q9UPX8 1470 aa16.77■□□□□ 0.28
LINC00538-201ENST00000626109 KDM5CP41229 1560 aa16.76■□□□□ 0.27
LINC00538-201ENST00000626109 FRMPD1Q5SYB0 1578 aa16.76■□□□□ 0.27
LINC00538-201ENST00000626109 C9orf84Q5VXU9 1444 aa16.75■□□□□ 0.27
LINC00538-201ENST00000626109 PAXIP1Q6ZW49 1069 aaPredicted RBP16.75■□□□□ 0.27
LINC00538-201ENST00000626109 SPAG9O60271 1321 aaKnown RBP16.75■□□□□ 0.27
LINC00538-201ENST00000626109 MAST1Q9Y2H9 1570 aa16.74■□□□□ 0.27
LINC00538-201ENST00000626109 DHX37Q8IY37 1157 aaKnown RBP16.74■□□□□ 0.27
LINC00538-201ENST00000626109 MYT1LQ9UL68 1186 aa16.74■□□□□ 0.27
LINC00538-201ENST00000626109 CCDC9Q9Y3X0 531 aaKnown RBP16.73■□□□□ 0.27
LINC00538-201ENST00000626109 ZMYM4Q5VZL5 1548 aa16.73■□□□□ 0.27
LINC00538-201ENST00000626109 HECW2Q9P2P5 1572 aa16.73■□□□□ 0.27
LINC00538-201ENST00000626109 CFAP44Q96MT7 982 aa16.72■□□□□ 0.27
LINC00538-201ENST00000626109 PTPRKQ15262 1439 aa16.72■□□□□ 0.27
LINC00538-201ENST00000626109 INO80Q9ULG1 1556 aaPredicted RBP16.72■□□□□ 0.27
LINC00538-201ENST00000626109 ATP7AQ04656 1500 aa16.72■□□□□ 0.27
LINC00538-201ENST00000626109 ZFYVE16Q7Z3T8 1539 aa16.72■□□□□ 0.27
LINC00538-201ENST00000626109 MLH3Q9UHC1 1453 aa16.72■□□□□ 0.27
LINC00538-201ENST00000626109 RTEL1-TNFRSF6BF6WH68 1400 aa16.72■□□□□ 0.27
LINC00538-201ENST00000626109 CHIC2Q9UKJ5 165 aa16.72■□□□□ 0.27
LINC00538-201ENST00000626109 ADGBQ8N7X0 1667 aa16.7■□□□□ 0.26
LINC00538-201ENST00000626109 MAGI2Q86UL8 1455 aa16.7■□□□□ 0.26
LINC00538-201ENST00000626109 ADGRL2O95490 1459 aa16.7■□□□□ 0.26
LINC00538-201ENST00000626109 ANKRD30AQ9BXX3 1397 aa16.69■□□□□ 0.26
LINC00538-201ENST00000626109 ROCK1Q13464 1354 aa16.69■□□□□ 0.26
LINC00538-201ENST00000626109 FOXD4L1Q9NU39 408 aa16.68■□□□□ 0.26
LINC00538-201ENST00000626109 KIDINS220Q9ULH0 1771 aa16.68■□□□□ 0.26
LINC00538-201ENST00000626109 PLXNC1O60486 1568 aa16.68■□□□□ 0.26
LINC00538-201ENST00000626109 NCOA1Q15788 1441 aa16.66■□□□□ 0.26
LINC00538-201ENST00000626109 TSHZ2Q9NRE2 1034 aa16.66■□□□□ 0.26
LINC00538-201ENST00000626109 BRD2P25440 801 aaKnown RBP16.65■□□□□ 0.26
LINC00538-201ENST00000626109 KIF15Q9NS87 1388 aa16.65■□□□□ 0.26
LINC00538-201ENST00000626109 YEATS2Q9ULM3 1422 aa16.65■□□□□ 0.26
LINC00538-201ENST00000626109 PDE4CQ08493 712 aa16.64■□□□□ 0.26
LINC00538-201ENST00000626109 DIEXFQ68CQ4 756 aaKnown RBP16.64■□□□□ 0.26
LINC00538-201ENST00000626109 RRP7BPQ9NSQ0 103 aa16.64■□□□□ 0.26
LINC00538-201ENST00000626109 ARHGEF40Q8TER5 1519 aa16.64■□□□□ 0.25
LINC00538-201ENST00000626109 ABCA6Q8N139 1617 aa16.64■□□□□ 0.25
LINC00538-201ENST00000626109 HSP90B1P14625 803 aaKnown RBP16.64■□□□□ 0.25
LINC00538-201ENST00000626109 DIP2CQ9Y2E4 1556 aa16.63■□□□□ 0.25
LINC00538-201ENST00000626109 PPP4R3CPQ6ZMV5 832 aa16.63■□□□□ 0.25
LINC00538-201ENST00000626109 HFM1A2PYH4 1435 aa16.62■□□□□ 0.25
LINC00538-201ENST00000626109 DUOX2Q9NRD8 1548 aa16.62■□□□□ 0.25
LINC00538-201ENST00000626109 HMGB1P09429 215 aaKnown RBP16.6■□□□□ 0.25
LINC00538-201ENST00000626109 ATP10AO60312 1499 aa16.6■□□□□ 0.25
LINC00538-201ENST00000626109 A2MP01023 1474 aa16.6■□□□□ 0.25
LINC00538-201ENST00000626109 GCC2Q8IWJ2 1684 aa16.6■□□□□ 0.25
LINC00538-201ENST00000626109 NAIPQ13075 1403 aa16.6■□□□□ 0.25
LINC00538-201ENST00000626109 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.58■□□□□ 0.25
LINC00538-201ENST00000626109 DHX29Q7Z478 1369 aaKnown RBP16.58■□□□□ 0.25
LINC00538-201ENST00000626109 ERBINQ96RT1 1412 aa16.58■□□□□ 0.24
LINC00538-201ENST00000626109 ANKRD50Q9ULJ7 1429 aa16.58■□□□□ 0.24
LINC00538-201ENST00000626109 REREQ9P2R6 1566 aa16.57■□□□□ 0.24
LINC00538-201ENST00000626109 SETD5Q9C0A6 1442 aa16.57■□□□□ 0.24
LINC00538-201ENST00000626109 ZNF316A6NFI3 1004 aaPredicted RBP16.56■□□□□ 0.24
LINC00538-201ENST00000626109 ARID3AQ99856 593 aa16.55■□□□□ 0.24
LINC00538-201ENST00000626109 CENPBP07199 599 aaPredicted RBP16.54■□□□□ 0.24
LINC00538-201ENST00000626109 EIF2AK4Q9P2K8 1649 aaKnown RBP16.54■□□□□ 0.24
LINC00538-201ENST00000626109 AGLP35573 1532 aa16.52■□□□□ 0.23
LINC00538-201ENST00000626109 RAB3GAP2Q9H2M9 1393 aa16.52■□□□□ 0.23
LINC00538-201ENST00000626109 SCAF1Q9H7N4 1312 aaKnown RBP16.51■□□□□ 0.23
LINC00538-201ENST00000626109 KIF3BO15066 747 aa16.51■□□□□ 0.23
LINC00538-201ENST00000626109 ACIN1Q9UKV3 1341 aaKnown RBP16.49■□□□□ 0.23
LINC00538-201ENST00000626109 BCORL1Q5H9F3 1711 aa16.49■□□□□ 0.23
LINC00538-201ENST00000626109 ARID4BQ4LE39 1312 aaPredicted RBP16.49■□□□□ 0.23
LINC00538-201ENST00000626109 TAF7LQ5H9L4 462 aa16.49■□□□□ 0.23
LINC00538-201ENST00000626109 SIGLEC1Q9BZZ2 1709 aa16.47■□□□□ 0.23
LINC00538-201ENST00000626109 RNF17Q9BXT8 1623 aaKnown RBP16.46■□□□□ 0.23
LINC00538-201ENST00000626109 CLSPNQ9HAW4 1339 aa16.46■□□□□ 0.23
LINC00538-201ENST00000626109 UNC13BO14795 1591 aa16.46■□□□□ 0.22
LINC00538-201ENST00000626109 DEPDC5O75140 1603 aa16.45■□□□□ 0.22
LINC00538-201ENST00000626109 ZBTB7CA1YPR0 619 aa16.45■□□□□ 0.22
LINC00538-201ENST00000626109 GGT6Q6P531 493 aa16.45■□□□□ 0.22
LINC00538-201ENST00000626109 BBXQ8WY36 941 aaPredicted RBP16.45■□□□□ 0.22
LINC00538-201ENST00000626109 TRIM52Q96A61 297 aa16.45■□□□□ 0.22
LINC00538-201ENST00000626109 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.44■□□□□ 0.22
LINC00538-201ENST00000626109 PRDM15P57071 1507 aaPredicted RBP16.44■□□□□ 0.22
LINC00538-201ENST00000626109 KANK1Q14678 1352 aa16.44■□□□□ 0.22
LINC00538-201ENST00000626109 MLECQ14165 292 aa16.43■□□□□ 0.22
LINC00538-201ENST00000626109 MROH1Q8NDA8 1641 aa16.42■□□□□ 0.22
LINC00538-201ENST00000626109 NUP155O75694 1391 aa16.42■□□□□ 0.22
LINC00538-201ENST00000626109 KDM5DQ9BY66 1539 aa16.4■□□□□ 0.22
LINC00538-201ENST00000626109 NECTIN2Q92692 538 aa16.4■□□□□ 0.22
LINC00538-201ENST00000626109 NEFLP07196 543 aa16.39■□□□□ 0.21
LINC00538-201ENST00000626109 PUS7Q96PZ0 661 aaKnown RBP16.39■□□□□ 0.21
LINC00538-201ENST00000626109 FAM135AQ9P2D6 1515 aa16.39■□□□□ 0.21
LINC00538-201ENST00000626109 IQGAP3Q86VI3 1631 aa16.39■□□□□ 0.21
LINC00538-201ENST00000626109 VWDEQ8N2E2 1590 aa16.38■□□□□ 0.21
LINC00538-201ENST00000626109 WASHC2CQ9Y4E1 1318 aa16.37■□□□□ 0.21
LINC00538-201ENST00000626109 ESF1Q9H501 851 aaKnown RBP16.37■□□□□ 0.21
LINC00538-201ENST00000626109 ZC3H13Q5T200 1668 aaKnown RBP16.37■□□□□ 0.21
LINC00538-201ENST00000626109 NEUROD1Q13562 356 aa16.37■□□□□ 0.21
LINC00538-201ENST00000626109 ABCC3O15438 1527 aa16.36■□□□□ 0.21
LINC00538-201ENST00000626109 PZPP20742 1482 aa16.36■□□□□ 0.21
LINC00538-201ENST00000626109 POLR3GLQ9BT43 218 aa16.35■□□□□ 0.21
LINC00538-201ENST00000626109 LMTK2Q8IWU2 1503 aa16.35■□□□□ 0.21
LINC00538-201ENST00000626109 CEP152O94986 1710 aa16.34■□□□□ 0.21
LINC00538-201ENST00000626109 CNTLNQ9NXG0 1405 aa16.34■□□□□ 0.21
LINC00538-201ENST00000626109 PKD2Q13563 968 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms