RNA–Protein interactions for RNA: ENST00000602784.1

RNF40-212, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 991 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-212ENST00000602784 PTPRMP28827 1452 aa21.01■□□□□ 0.95
RNF40-212ENST00000602784 RNF17Q9BXT8 1623 aaKnown RBP21■□□□□ 0.95
RNF40-212ENST00000602784 FAM135AQ9P2D6 1515 aa21■□□□□ 0.95
RNF40-212ENST00000602784 RIMS1Q86UR5 1692 aaKnown RBP20.99■□□□□ 0.95
RNF40-212ENST00000602784 AEBP2Q6ZN18 517 aaPredicted RBP20.98■□□□□ 0.95
RNF40-212ENST00000602784 DEPDC5O75140 1603 aa20.94■□□□□ 0.94
RNF40-212ENST00000602784 MROH1Q8NDA8 1641 aa20.94■□□□□ 0.94
RNF40-212ENST00000602784 WASHC2CQ9Y4E1 1318 aa20.94■□□□□ 0.94
RNF40-212ENST00000602784 MROH2AA6NES4 1674 aa20.93■□□□□ 0.94
RNF40-212ENST00000602784 HFM1A2PYH4 1435 aa20.93■□□□□ 0.94
RNF40-212ENST00000602784 PRDM15P57071 1507 aaPredicted RBP20.93■□□□□ 0.94
RNF40-212ENST00000602784 KDM5DQ9BY66 1539 aa20.93■□□□□ 0.94
RNF40-212ENST00000602784 ZMYM3Q14202 1370 aa20.92■□□□□ 0.94
RNF40-212ENST00000602784 NAIPQ13075 1403 aa20.92■□□□□ 0.94
RNF40-212ENST00000602784 CLTCQ00610 1675 aaKnown RBP20.91■□□□□ 0.94
RNF40-212ENST00000602784 KANK1Q14678 1352 aa20.9■□□□□ 0.94
RNF40-212ENST00000602784 ZC3H13Q5T200 1668 aaKnown RBP20.89■□□□□ 0.93
RNF40-212ENST00000602784 ABCC3O15438 1527 aa20.88■□□□□ 0.93
RNF40-212ENST00000602784 GCC2Q8IWJ2 1684 aa20.88■□□□□ 0.93
RNF40-212ENST00000602784 VWDEQ8N2E2 1590 aa20.88■□□□□ 0.93
RNF40-212ENST00000602784 C3P01024 1663 aa20.87■□□□□ 0.93
RNF40-212ENST00000602784 CEBPAP49715 358 aaPredicted RBP20.87■□□□□ 0.93
RNF40-212ENST00000602784 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.87■□□□□ 0.93
RNF40-212ENST00000602784 UNC13BO14795 1591 aa20.85■□□□□ 0.93
RNF40-212ENST00000602784 NPATQ14207 1427 aa20.85■□□□□ 0.93
RNF40-212ENST00000602784 LMTK2Q8IWU2 1503 aa20.84■□□□□ 0.93
RNF40-212ENST00000602784 PZPP20742 1482 aa20.82■□□□□ 0.92
RNF40-212ENST00000602784 ARHGAP31Q2M1Z3 1444 aa20.82■□□□□ 0.92
RNF40-212ENST00000602784 SETD1BQ9UPS6 1966 aaKnown RBP20.82■□□□□ 0.92
RNF40-212ENST00000602784 PLPPR3Q6T4P5 718 aa20.81■□□□□ 0.92
RNF40-212ENST00000602784 CEP152O94986 1710 aa20.81■□□□□ 0.92
RNF40-212ENST00000602784 ACIN1Q9UKV3 1341 aaKnown RBP20.8■□□□□ 0.92
RNF40-212ENST00000602784 NUP155O75694 1391 aa20.8■□□□□ 0.92
RNF40-212ENST00000602784 CAMSAP1Q5T5Y3 1602 aa20.79■□□□□ 0.92
RNF40-212ENST00000602784 SETD5Q9C0A6 1442 aa20.78■□□□□ 0.92
RNF40-212ENST00000602784 IQGAP3Q86VI3 1631 aa20.77■□□□□ 0.92
RNF40-212ENST00000602784 EFCAB6Q5THR3 1501 aa20.75■□□□□ 0.91
RNF40-212ENST00000602784 FBXO31Q5XUX0 539 aaPredicted RBP20.75■□□□□ 0.91
RNF40-212ENST00000602784 TET3O43151 1660 aa20.74■□□□□ 0.91
RNF40-212ENST00000602784 RPRD2Q5VT52 1461 aaKnown RBP20.74■□□□□ 0.91
RNF40-212ENST00000602784 HRCP23327 699 aa20.73■□□□□ 0.91
RNF40-212ENST00000602784 TRIM26Q12899 539 aaPredicted RBP20.73■□□□□ 0.91
RNF40-212ENST00000602784 PREX1Q8TCU6 1659 aa20.73■□□□□ 0.91
RNF40-212ENST00000602784 SPATA31D1Q6ZQQ2 1576 aa20.72■□□□□ 0.91
RNF40-212ENST00000602784 TNRQ92752 1358 aa20.72■□□□□ 0.91
RNF40-212ENST00000602784 UHRF1BP1Q6BDS2 1440 aa20.71■□□□□ 0.91
RNF40-212ENST00000602784 ERVK-7P63135 1459 aa20.71■□□□□ 0.91
RNF40-212ENST00000602784 LMTK3Q96Q04 1460 aa20.7■□□□□ 0.9
RNF40-212ENST00000602784 TRIM52Q96A61 297 aa20.7■□□□□ 0.9
RNF40-212ENST00000602784 RAB3GAP2Q9H2M9 1393 aa20.69■□□□□ 0.9
RNF40-212ENST00000602784 NOS1P29475 1434 aa20.67■□□□□ 0.9
RNF40-212ENST00000602784 NLRP1Q9C000 1473 aa20.67■□□□□ 0.9
RNF40-212ENST00000602784 CFAP65Q6ZU64 1925 aaKnown RBP20.65■□□□□ 0.9
RNF40-212ENST00000602784 E9PCH4 1651 aa20.65■□□□□ 0.9
RNF40-212ENST00000602784 MYO3AQ8NEV4 1616 aa20.65■□□□□ 0.9
RNF40-212ENST00000602784 SLC4A1APQ9BWU0 796 aaKnown RBP20.64■□□□□ 0.89
RNF40-212ENST00000602784 A2ML1A8K2U0 1454 aa20.63■□□□□ 0.89
RNF40-212ENST00000602784 ZNF142P52746 1687 aaPredicted RBP20.63■□□□□ 0.89
RNF40-212ENST00000602784 SLC52A1Q9NWF4 448 aa20.62■□□□□ 0.89
RNF40-212ENST00000602784 CEP170BQ9Y4F5 1589 aaPredicted RBP20.62■□□□□ 0.89
RNF40-212ENST00000602784 PKD2Q13563 968 aa20.6■□□□□ 0.89
RNF40-212ENST00000602784 MPHOSPH9Q99550 1183 aa20.6■□□□□ 0.89
RNF40-212ENST00000602784 SYNMO15061 1565 aa20.59■□□□□ 0.89
RNF40-212ENST00000602784 PTPRTO14522 1441 aa20.59■□□□□ 0.89
RNF40-212ENST00000602784 HSPA2P54652 639 aa20.57■□□□□ 0.88
RNF40-212ENST00000602784 IDI1Q13907 227 aa20.57■□□□□ 0.88
RNF40-212ENST00000602784 THEMISQ8N1K5 641 aaPredicted RBP20.57■□□□□ 0.88
RNF40-212ENST00000602784 UGGT1Q9NYU2 1555 aa20.55■□□□□ 0.88
RNF40-212ENST00000602784 PIK3C2BO00750 1634 aa20.53■□□□□ 0.88
RNF40-212ENST00000602784 SPHKAPQ2M3C7 1700 aa20.53■□□□□ 0.88
RNF40-212ENST00000602784 KDM5AP29375 1690 aaKnown RBP20.53■□□□□ 0.88
RNF40-212ENST00000602784 PLA2R1Q13018 1463 aa20.52■□□□□ 0.88
RNF40-212ENST00000602784 TRPM2O94759 1503 aa20.51■□□□□ 0.87
RNF40-212ENST00000602784 UBR1Q8IWV7 1749 aa20.5■□□□□ 0.87
RNF40-212ENST00000602784 STAG3Q9UJ98 1225 aa20.49■□□□□ 0.87
RNF40-212ENST00000602784 ADGRB3O60242 1522 aa20.48■□□□□ 0.87
RNF40-212ENST00000602784 FOXD1Q16676 465 aa20.47■□□□□ 0.87
RNF40-212ENST00000602784 ARHGAP23Q9P227 1491 aa20.45■□□□□ 0.86
RNF40-212ENST00000602784 STRCQ7RTU9 1775 aa20.45■□□□□ 0.86
RNF40-212ENST00000602784 SLIT1O75093 1534 aa20.45■□□□□ 0.86
RNF40-212ENST00000602784 ANKLE2Q86XL3 938 aa20.45■□□□□ 0.86
RNF40-212ENST00000602784 DMRT2Q9Y5R5 561 aa20.45■□□□□ 0.86
RNF40-212ENST00000602784 TMEM131LA2VDJ0 1609 aa20.45■□□□□ 0.86
RNF40-212ENST00000602784 TMEM2Q9UHN6 1383 aa20.45■□□□□ 0.86
RNF40-212ENST00000602784 CLTCL1P53675 1640 aa20.42■□□□□ 0.86
RNF40-212ENST00000602784 NCKAP5LQ9HCH0 1330 aa20.41■□□□□ 0.86
RNF40-212ENST00000602784 CCDC144AA2RUR9 1427 aa20.41■□□□□ 0.86
RNF40-212ENST00000602784 CHGAP10645 457 aaKnown RBP20.4■□□□□ 0.86
RNF40-212ENST00000602784 ANKRD30BQ9BXX2 1392 aa20.4■□□□□ 0.86
RNF40-212ENST00000602784 PCGF6Q9BYE7 350 aa20.4■□□□□ 0.86
RNF40-212ENST00000602784 EID1Q9Y6B2 187 aa20.4■□□□□ 0.86
RNF40-212ENST00000602784 HDGFP51858 240 aaKnown RBP20.39■□□□□ 0.85
RNF40-212ENST00000602784 MED14O60244 1454 aa20.38■□□□□ 0.85
RNF40-212ENST00000602784 TXNDC2Q86VQ3 553 aa20.38■□□□□ 0.85
RNF40-212ENST00000602784 SCAF11Q99590 1463 aaKnown RBP20.37■□□□□ 0.85
RNF40-212ENST00000602784 POLR1AO95602 1720 aaPredicted RBP20.37■□□□□ 0.85
RNF40-212ENST00000602784 LTKP29376 864 aa20.37■□□□□ 0.85
RNF40-212ENST00000602784 KIF1BO60333 1816 aa20.37■□□□□ 0.85
RNF40-212ENST00000602784 MYO5BQ9ULV0 1848 aa20.37■□□□□ 0.85
RNF40-212ENST00000602784 ZFYVE9O95405 1425 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms