RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ADGRL2O95490 1459 aa23.27■■□□□ 1.32
LIG1-219ENST00000600055 ZMYM3Q14202 1370 aa23.26■■□□□ 1.31
LIG1-219ENST00000600055 CLTCQ00610 1675 aaKnown RBP23.25■■□□□ 1.31
LIG1-219ENST00000600055 C3P01024 1663 aa23.24■■□□□ 1.31
LIG1-219ENST00000600055 ERBINQ96RT1 1412 aa23.23■■□□□ 1.31
LIG1-219ENST00000600055 EIF2AK4Q9P2K8 1649 aaKnown RBP23.22■■□□□ 1.31
LIG1-219ENST00000600055 WASHC2CQ9Y4E1 1318 aa23.22■■□□□ 1.31
LIG1-219ENST00000600055 RNF17Q9BXT8 1623 aaKnown RBP23.21■■□□□ 1.31
LIG1-219ENST00000600055 MROH2AA6NES4 1674 aa23.19■■□□□ 1.3
LIG1-219ENST00000600055 MROH1Q8NDA8 1641 aa23.19■■□□□ 1.3
LIG1-219ENST00000600055 KDM5DQ9BY66 1539 aa23.18■■□□□ 1.3
LIG1-219ENST00000600055 LMTK3Q96Q04 1460 aa23.17■■□□□ 1.3
LIG1-219ENST00000600055 ROCK1Q13464 1354 aa23.17■■□□□ 1.3
LIG1-219ENST00000600055 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.17■■□□□ 1.32e-7■■■■■ 30.1
LIG1-219ENST00000600055 ANKRD50Q9ULJ7 1429 aa23.16■■□□□ 1.3
LIG1-219ENST00000600055 FAM135AQ9P2D6 1515 aa23.14■■□□□ 1.3
LIG1-219ENST00000600055 ABCC3O15438 1527 aa23.13■■□□□ 1.29
LIG1-219ENST00000600055 HSPA2P54652 639 aa23.13■■□□□ 1.29
LIG1-219ENST00000600055 FBXO31Q5XUX0 539 aaPredicted RBP23.13■■□□□ 1.29
LIG1-219ENST00000600055 NPATQ14207 1427 aa23.12■■□□□ 1.29
LIG1-219ENST00000600055 PRDM15P57071 1507 aaPredicted RBP23.11■■□□□ 1.29
LIG1-219ENST00000600055 UHRF1BP1Q6BDS2 1440 aa23.1■■□□□ 1.29
LIG1-219ENST00000600055 DEPDC5O75140 1603 aa23.09■■□□□ 1.29
LIG1-219ENST00000600055 PZPP20742 1482 aa23.09■■□□□ 1.29
LIG1-219ENST00000600055 PREX1Q8TCU6 1659 aa23.09■■□□□ 1.29
LIG1-219ENST00000600055 CEP152O94986 1710 aa23.08■■□□□ 1.28
LIG1-219ENST00000600055 KANK1Q14678 1352 aa23.07■■□□□ 1.28
LIG1-219ENST00000600055 ZC3H13Q5T200 1668 aaKnown RBP23.06■■□□□ 1.28
LIG1-219ENST00000600055 SETD1BQ9UPS6 1966 aaKnown RBP23.05■■□□□ 1.28
LIG1-219ENST00000600055 VWDEQ8N2E2 1590 aa23.03■■□□□ 1.28
LIG1-219ENST00000600055 TNRQ92752 1358 aa23.02■■□□□ 1.28
LIG1-219ENST00000600055 CAMSAP1Q5T5Y3 1602 aa23.02■■□□□ 1.28
LIG1-219ENST00000600055 NAIPQ13075 1403 aa22.99■■□□□ 1.27
LIG1-219ENST00000600055 LMTK2Q8IWU2 1503 aa22.99■■□□□ 1.27
LIG1-219ENST00000600055 MYO3AQ8NEV4 1616 aa22.99■■□□□ 1.27
LIG1-219ENST00000600055 ARHGAP31Q2M1Z3 1444 aa22.99■■□□□ 1.27
LIG1-219ENST00000600055 ERVK-7P63135 1459 aa22.98■■□□□ 1.27
LIG1-219ENST00000600055 UNC13BO14795 1591 aa22.97■■□□□ 1.27
LIG1-219ENST00000600055 SPATA31D1Q6ZQQ2 1576 aa22.96■■□□□ 1.27
LIG1-219ENST00000600055 HFM1A2PYH4 1435 aa22.95■■□□□ 1.26
LIG1-219ENST00000600055 CEP170BQ9Y4F5 1589 aaPredicted RBP22.94■■□□□ 1.26
LIG1-219ENST00000600055 NUP155O75694 1391 aa22.94■■□□□ 1.26
LIG1-219ENST00000600055 A2ML1A8K2U0 1454 aa22.93■■□□□ 1.26
LIG1-219ENST00000600055 EFCAB6Q5THR3 1501 aa22.92■■□□□ 1.26
LIG1-219ENST00000600055 ZNF142P52746 1687 aaPredicted RBP22.91■■□□□ 1.26
LIG1-219ENST00000600055 GCC2Q8IWJ2 1684 aa22.91■■□□□ 1.26
LIG1-219ENST00000600055 CFAP65Q6ZU64 1925 aaKnown RBP22.9■■□□□ 1.26
LIG1-219ENST00000600055 NLRP1Q9C000 1473 aa22.89■■□□□ 1.25
LIG1-219ENST00000600055 IQGAP3Q86VI3 1631 aa22.88■■□□□ 1.25
LIG1-219ENST00000600055 TET3O43151 1660 aa22.87■■□□□ 1.25
LIG1-219ENST00000600055 STRCQ7RTU9 1775 aa22.86■■□□□ 1.25
LIG1-219ENST00000600055 NCKAP5LQ9HCH0 1330 aa22.85■■□□□ 1.25
LIG1-219ENST00000600055 NOS1P29475 1434 aa22.85■■□□□ 1.25
LIG1-219ENST00000600055 TRIM52Q96A61 297 aa22.84■■□□□ 1.25
LIG1-219ENST00000600055 RPRD2Q5VT52 1461 aaKnown RBP22.83■■□□□ 1.25
LIG1-219ENST00000600055 UGGT1Q9NYU2 1555 aa22.83■■□□□ 1.25
LIG1-219ENST00000600055 SYNMO15061 1565 aa22.82■■□□□ 1.24
LIG1-219ENST00000600055 IDI1Q13907 227 aa22.82■■□□□ 1.24
LIG1-219ENST00000600055 PLA2R1Q13018 1463 aa22.81■■□□□ 1.24
LIG1-219ENST00000600055 THEMISQ8N1K5 641 aaPredicted RBP22.81■■□□□ 1.24
LIG1-219ENST00000600055 E9PCH4 1651 aa22.81■■□□□ 1.24
LIG1-219ENST00000600055 DMRT2Q9Y5R5 561 aa22.78■■□□□ 1.24
LIG1-219ENST00000600055 SETD5Q9C0A6 1442 aa22.77■■□□□ 1.24
LIG1-219ENST00000600055 PKD2Q13563 968 aa22.77■■□□□ 1.24
LIG1-219ENST00000600055 PIK3C2BO00750 1634 aa22.75■■□□□ 1.23
LIG1-219ENST00000600055 SLC52A1Q9NWF4 448 aa22.75■■□□□ 1.23
LIG1-219ENST00000600055 PTPRTO14522 1441 aa22.74■■□□□ 1.23
LIG1-219ENST00000600055 UBR1Q8IWV7 1749 aa22.74■■□□□ 1.23
LIG1-219ENST00000600055 STAG3Q9UJ98 1225 aa22.74■■□□□ 1.23
LIG1-219ENST00000600055 ANKLE2Q86XL3 938 aa22.73■■□□□ 1.23
LIG1-219ENST00000600055 SLC4A1APQ9BWU0 796 aaKnown RBP22.73■■□□□ 1.23
LIG1-219ENST00000600055 RAB3GAP2Q9H2M9 1393 aa22.71■■□□□ 1.23
LIG1-219ENST00000600055 NEURL4Q96JN8 1562 aa22.68■■□□□ 1.22
LIG1-219ENST00000600055 LTKP29376 864 aa22.68■■□□□ 1.22
LIG1-219ENST00000600055 ADGRB3O60242 1522 aa22.67■■□□□ 1.22
LIG1-219ENST00000600055 ARHGAP23Q9P227 1491 aa22.67■■□□□ 1.22
LIG1-219ENST00000600055 TMEM2Q9UHN6 1383 aa22.67■■□□□ 1.22
LIG1-219ENST00000600055 CHGAP10645 457 aaKnown RBP22.67■■□□□ 1.22
LIG1-219ENST00000600055 FOXD1Q16676 465 aa22.67■■□□□ 1.22
LIG1-219ENST00000600055 TXNDC2Q86VQ3 553 aa22.66■■□□□ 1.22
LIG1-219ENST00000600055 SLIT1O75093 1534 aa22.66■■□□□ 1.22
LIG1-219ENST00000600055 MPHOSPH9Q99550 1183 aa22.65■■□□□ 1.22
LIG1-219ENST00000600055 POLR1AO95602 1720 aaPredicted RBP22.65■■□□□ 1.22
LIG1-219ENST00000600055 NPHP4O75161 1426 aaPredicted RBP22.64■■□□□ 1.21
LIG1-219ENST00000600055 SPHKAPQ2M3C7 1700 aa22.63■■□□□ 1.21
LIG1-219ENST00000600055 KDM5AP29375 1690 aaKnown RBP22.63■■□□□ 1.21
LIG1-219ENST00000600055 SCAF11Q99590 1463 aaKnown RBP22.63■■□□□ 1.21
LIG1-219ENST00000600055 MED14O60244 1454 aa22.62■■□□□ 1.21
LIG1-219ENST00000600055 EID1Q9Y6B2 187 aa22.62■■□□□ 1.21
LIG1-219ENST00000600055 TMEM131LA2VDJ0 1609 aa22.61■■□□□ 1.21
LIG1-219ENST00000600055 ZNF335Q9H4Z2 1342 aaPredicted RBP22.6■■□□□ 1.21
LIG1-219ENST00000600055 TRPM2O94759 1503 aa22.59■■□□□ 1.21
LIG1-219ENST00000600055 ACIN1Q9UKV3 1341 aaKnown RBP22.58■■□□□ 1.21
LIG1-219ENST00000600055 CLTCL1P53675 1640 aa22.57■■□□□ 1.2
LIG1-219ENST00000600055 MYO5BQ9ULV0 1848 aa22.57■■□□□ 1.2
LIG1-219ENST00000600055 RIMS2Q9UQ26 1411 aa22.57■■□□□ 1.2
LIG1-219ENST00000600055 IQGAP1P46940 1657 aa22.56■■□□□ 1.2
LIG1-219ENST00000600055 NUTM2DQ5VT03 806 aaPredicted RBP22.56■■□□□ 1.2
LIG1-219ENST00000600055 SENP3Q9H4L4 574 aaPredicted RBP22.56■■□□□ 1.2
LIG1-219ENST00000600055 ZFYVE9O95405 1425 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms