RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 SCAPERQ9BY12 1400 aa20.28■□□□□ 0.84
VRK3-217ENST00000599538 ADGRL1O94910 1474 aa20.27■□□□□ 0.84
VRK3-217ENST00000599538 CCDC144AA2RUR9 1427 aa20.26■□□□□ 0.83
VRK3-217ENST00000599538 USP47Q96K76 1375 aa20.24■□□□□ 0.83
VRK3-217ENST00000599538 RGL3Q3MIN7 710 aa20.24■□□□□ 0.83
VRK3-217ENST00000599538 KIF7Q2M1P5 1343 aa20.24■□□□□ 0.83
VRK3-217ENST00000599538 ATP7AQ04656 1500 aa20.24■□□□□ 0.83
VRK3-217ENST00000599538 INO80Q9ULG1 1556 aaPredicted RBP20.23■□□□□ 0.83
VRK3-217ENST00000599538 CCER2I3L3R5 266 aa20.23■□□□□ 0.83
VRK3-217ENST00000599538 RALGAPBQ86X10 1494 aa20.22■□□□□ 0.83
VRK3-217ENST00000599538 KDM5CP41229 1560 aa20.21■□□□□ 0.83
VRK3-217ENST00000599538 BCORL1Q5H9F3 1711 aa20.21■□□□□ 0.83
VRK3-217ENST00000599538 MYT1LQ9UL68 1186 aa20.21■□□□□ 0.83
VRK3-217ENST00000599538 CNTLNQ9NXG0 1405 aa20.21■□□□□ 0.83
VRK3-217ENST00000599538 CARD11Q9BXL7 1154 aa20.18■□□□□ 0.82
VRK3-217ENST00000599538 CD109Q6YHK3 1445 aa20.18■□□□□ 0.82
VRK3-217ENST00000599538 POLR1AO95602 1720 aaPredicted RBP20.17■□□□□ 0.82
VRK3-217ENST00000599538 A2MP01023 1474 aa20.17■□□□□ 0.82
VRK3-217ENST00000599538 ATP10AO60312 1499 aa20.16■□□□□ 0.82
VRK3-217ENST00000599538 E9PCH4 1651 aa20.16■□□□□ 0.82
VRK3-217ENST00000599538 KIF3BO15066 747 aa20.15■□□□□ 0.82
VRK3-217ENST00000599538 DEPDC5O75140 1603 aa20.15■□□□□ 0.82
VRK3-217ENST00000599538 KIDINS220Q9ULH0 1771 aa20.15■□□□□ 0.82
VRK3-217ENST00000599538 PRAG1Q86YV5 1406 aa20.14■□□□□ 0.82
VRK3-217ENST00000599538 DHX29Q7Z478 1369 aaKnown RBP20.13■□□□□ 0.81
VRK3-217ENST00000599538 NBPF1Q3BBV0 1214 aa20.12■□□□□ 0.81
VRK3-217ENST00000599538 ROCK2O75116 1388 aaKnown RBP20.11■□□□□ 0.81
VRK3-217ENST00000599538 ST20-MTHFSA0A0A6YYL1 179 aa20.11■□□□□ 0.81
VRK3-217ENST00000599538 CYB5RLQ6IPT4 315 aa20.11■□□□□ 0.81
VRK3-217ENST00000599538 POLR3GLQ9BT43 218 aa20.11■□□□□ 0.81
VRK3-217ENST00000599538 ZNF518AQ6AHZ1 1483 aa20.11■□□□□ 0.81
VRK3-217ENST00000599538 TRPM1Q7Z4N2 1603 aa20.11■□□□□ 0.81
VRK3-217ENST00000599538 MROH1Q8NDA8 1641 aa20.1■□□□□ 0.81
VRK3-217ENST00000599538 CCDC184Q52MB2 194 aa20.09■□□□□ 0.81
VRK3-217ENST00000599538 VWDEQ8N2E2 1590 aa20.09■□□□□ 0.81
VRK3-217ENST00000599538 PRKRIP1Q9H875 184 aaPredicted RBP20.08■□□□□ 0.8
VRK3-217ENST00000599538 POGZQ7Z3K3 1410 aa20.07■□□□□ 0.8
VRK3-217ENST00000599538 TET3O43151 1660 aa20.06■□□□□ 0.8
VRK3-217ENST00000599538 PTPRTO14522 1441 aa20.06■□□□□ 0.8
VRK3-217ENST00000599538 EIF2AK4Q9P2K8 1649 aaKnown RBP20.05■□□□□ 0.8
VRK3-217ENST00000599538 KANK1Q14678 1352 aa20.05■□□□□ 0.8
VRK3-217ENST00000599538 TRPM2O94759 1503 aa20.05■□□□□ 0.8
VRK3-217ENST00000599538 PRDM15P57071 1507 aaPredicted RBP20.05■□□□□ 0.8
VRK3-217ENST00000599538 SPHKAPQ2M3C7 1700 aa20.05■□□□□ 0.8
VRK3-217ENST00000599538 CFAP74Q9C0B2 1584 aa20.04■□□□□ 0.8
VRK3-217ENST00000599538 RAPGEF3O95398 923 aa20.04■□□□□ 0.8
VRK3-217ENST00000599538 CLTCL1P53675 1640 aa20.04■□□□□ 0.8
VRK3-217ENST00000599538 GPRASP1Q5JY77 1395 aa20.01■□□□□ 0.79
VRK3-217ENST00000599538 FRMPD1Q5SYB0 1578 aa20.01■□□□□ 0.79
VRK3-217ENST00000599538 CNGB1Q14028 1251 aaPredicted RBP20.01■□□□□ 0.79
VRK3-217ENST00000599538 RIMBP3CA6NJZ7 1639 aa20.01■□□□□ 0.79
VRK3-217ENST00000599538 RIMBP3BA6NNM3 1639 aa20.01■□□□□ 0.79
VRK3-217ENST00000599538 RIMBP3Q9UFD9 1639 aa20.01■□□□□ 0.79
VRK3-217ENST00000599538 MLH3Q9UHC1 1453 aa20■□□□□ 0.79
VRK3-217ENST00000599538 ARID4BQ4LE39 1312 aaPredicted RBP19.99■□□□□ 0.79
VRK3-217ENST00000599538 CEP152O94986 1710 aa19.99■□□□□ 0.79
VRK3-217ENST00000599538 UGGT1Q9NYU2 1555 aa19.99■□□□□ 0.79
VRK3-217ENST00000599538 HECW2Q9P2P5 1572 aa19.99■□□□□ 0.79
VRK3-217ENST00000599538 ABCA6Q8N139 1617 aa19.97■□□□□ 0.79
VRK3-217ENST00000599538 NEO1Q92859 1461 aa19.97■□□□□ 0.79
VRK3-217ENST00000599538 PPRC1Q5VV67 1664 aaKnown RBP19.96■□□□□ 0.79
VRK3-217ENST00000599538 GGT6Q6P531 493 aa19.96■□□□□ 0.79
VRK3-217ENST00000599538 EFCAB6Q5THR3 1501 aa19.96■□□□□ 0.79
VRK3-217ENST00000599538 MAP3K4Q9Y6R4 1608 aa19.95■□□□□ 0.78
VRK3-217ENST00000599538 MADDQ8WXG6 1647 aa19.94■□□□□ 0.78
VRK3-217ENST00000599538 RNF17Q9BXT8 1623 aaKnown RBP19.94■□□□□ 0.78
VRK3-217ENST00000599538 LAMC1P11047 1609 aa19.94■□□□□ 0.78
VRK3-217ENST00000599538 MRS2Q9HD23 443 aa19.93■□□□□ 0.78
VRK3-217ENST00000599538 HNRNPUQ00839 825 aaKnown RBP eCLIP19.93■□□□□ 0.78
VRK3-217ENST00000599538 TESK2Q96S53 571 aa19.93■□□□□ 0.78
VRK3-217ENST00000599538 LMTK2Q8IWU2 1503 aa19.92■□□□□ 0.78
VRK3-217ENST00000599538 CFAP65Q6ZU64 1925 aaKnown RBP19.91■□□□□ 0.78
VRK3-217ENST00000599538 FAM9BQ8IZU0 186 aa19.9■□□□□ 0.78
VRK3-217ENST00000599538 DISP3Q9P2K9 1392 aa19.9■□□□□ 0.78
VRK3-217ENST00000599538 RICTORQ6R327 1708 aa19.89■□□□□ 0.78
VRK3-217ENST00000599538 SUPT16HQ9Y5B9 1047 aaKnown RBP19.89■□□□□ 0.77
VRK3-217ENST00000599538 FAM69CQ0P6D2 419 aa19.88■□□□□ 0.77
VRK3-217ENST00000599538 DIP2CQ9Y2E4 1556 aa19.88■□□□□ 0.77
VRK3-217ENST00000599538 NPATQ14207 1427 aa19.88■□□□□ 0.77
VRK3-217ENST00000599538 YEATS2Q9ULM3 1422 aa19.87■□□□□ 0.77
VRK3-217ENST00000599538 GLI2P10070 1586 aa19.87■□□□□ 0.77
VRK3-217ENST00000599538 COL17A1Q9UMD9 1497 aaPredicted RBP19.86■□□□□ 0.77
VRK3-217ENST00000599538 MROH2AA6NES4 1674 aa19.85■□□□□ 0.77
VRK3-217ENST00000599538 ADGRF5Q8IZF2 1346 aa19.84■□□□□ 0.77
VRK3-217ENST00000599538 WASHC2CQ9Y4E1 1318 aa19.84■□□□□ 0.77
VRK3-217ENST00000599538 KIF1BO60333 1816 aa19.84■□□□□ 0.77
VRK3-217ENST00000599538 DIP2BQ9P265 1576 aa19.84■□□□□ 0.77
VRK3-217ENST00000599538 ABCC3O15438 1527 aa19.83■□□□□ 0.77
VRK3-217ENST00000599538 NEURL4Q96JN8 1562 aa19.83■□□□□ 0.76
VRK3-217ENST00000599538 IQGAP1P46940 1657 aa19.83■□□□□ 0.76
VRK3-217ENST00000599538 TSPOAP1O95153 1857 aa19.81■□□□□ 0.76
VRK3-217ENST00000599538 CFAP70Q5T0N1 1121 aa19.81■□□□□ 0.76
VRK3-217ENST00000599538 STAC3Q96MF2 364 aa19.81■□□□□ 0.76
VRK3-217ENST00000599538 CHGAP10645 457 aaKnown RBP19.81■□□□□ 0.76
VRK3-217ENST00000599538 PER1O15534 1290 aaPredicted RBP19.79■□□□□ 0.76
VRK3-217ENST00000599538 TMF1P82094 1093 aa19.79■□□□□ 0.76
VRK3-217ENST00000599538 SIGLEC1Q9BZZ2 1709 aa19.79■□□□□ 0.76
VRK3-217ENST00000599538 IFT172Q9UG01 1749 aa19.79■□□□□ 0.76
VRK3-217ENST00000599538 CAMSAP1Q5T5Y3 1602 aa19.78■□□□□ 0.76
VRK3-217ENST00000599538 MYOM2P54296 1465 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms