RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 ADGRL2O95490 1459 aa26.31■■□□□ 1.8
SHKBP1-212ENST00000596163 RRBP1Q9P2E9 1410 aaKnown RBP26.31■■□□□ 1.8
SHKBP1-212ENST00000596163 ITGAEP38570 1179 aa26.3■■□□□ 1.8
SHKBP1-212ENST00000596163 FAM135AQ9P2D6 1515 aa26.29■■□□□ 1.8
SHKBP1-212ENST00000596163 EIF2AK4Q9P2K8 1649 aaKnown RBP26.28■■□□□ 1.8
SHKBP1-212ENST00000596163 MROH2AA6NES4 1674 aa26.26■■□□□ 1.79
SHKBP1-212ENST00000596163 ROCK1Q13464 1354 aa26.26■■□□□ 1.79
SHKBP1-212ENST00000596163 PTPRKQ15262 1439 aa26.24■■□□□ 1.79
SHKBP1-212ENST00000596163 KDM5DQ9BY66 1539 aa26.24■■□□□ 1.79
SHKBP1-212ENST00000596163 NPATQ14207 1427 aa26.23■■□□□ 1.79
SHKBP1-212ENST00000596163 CLTCQ00610 1675 aaKnown RBP26.23■■□□□ 1.79
SHKBP1-212ENST00000596163 KANK1Q14678 1352 aa26.22■■□□□ 1.79
SHKBP1-212ENST00000596163 C3P01024 1663 aa26.22■■□□□ 1.79
SHKBP1-212ENST00000596163 RNF17Q9BXT8 1623 aaKnown RBP26.21■■□□□ 1.79
SHKBP1-212ENST00000596163 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.21■■□□□ 1.79
SHKBP1-212ENST00000596163 ANKRD50Q9ULJ7 1429 aa26.21■■□□□ 1.79
SHKBP1-212ENST00000596163 UHRF1BP1Q6BDS2 1440 aa26.2■■□□□ 1.78
SHKBP1-212ENST00000596163 LMTK3Q96Q04 1460 aa26.18■■□□□ 1.78
SHKBP1-212ENST00000596163 SETD1BQ9UPS6 1966 aaKnown RBP26.17■■□□□ 1.78
SHKBP1-212ENST00000596163 ABCC3O15438 1527 aa26.14■■□□□ 1.77
SHKBP1-212ENST00000596163 PZPP20742 1482 aa26.13■■□□□ 1.77
SHKBP1-212ENST00000596163 PREX1Q8TCU6 1659 aa26.12■■□□□ 1.77
SHKBP1-212ENST00000596163 HSPA2P54652 639 aa26.12■■□□□ 1.77
SHKBP1-212ENST00000596163 MROH1Q8NDA8 1641 aa26.11■■□□□ 1.77
SHKBP1-212ENST00000596163 PRDM15P57071 1507 aaPredicted RBP26.11■■□□□ 1.77
SHKBP1-212ENST00000596163 FBXO31Q5XUX0 539 aaPredicted RBP26.11■■□□□ 1.77
SHKBP1-212ENST00000596163 ZC3H13Q5T200 1668 aaKnown RBP26.11■■□□□ 1.77
SHKBP1-212ENST00000596163 TNRQ92752 1358 aa26.08■■□□□ 1.77
SHKBP1-212ENST00000596163 DEPDC5O75140 1603 aa26.07■■□□□ 1.76
SHKBP1-212ENST00000596163 ARHGAP31Q2M1Z3 1444 aa26.05■■□□□ 1.76
SHKBP1-212ENST00000596163 LMTK2Q8IWU2 1503 aa26.03■■□□□ 1.76
SHKBP1-212ENST00000596163 VWDEQ8N2E2 1590 aa26■■□□□ 1.75
SHKBP1-212ENST00000596163 CAMSAP1Q5T5Y3 1602 aa25.99■■□□□ 1.75
SHKBP1-212ENST00000596163 DMRT2Q9Y5R5 561 aa25.99■■□□□ 1.75
SHKBP1-212ENST00000596163 CEP152O94986 1710 aa25.99■■□□□ 1.75
SHKBP1-212ENST00000596163 NAIPQ13075 1403 aa25.97■■□□□ 1.75
SHKBP1-212ENST00000596163 NUP155O75694 1391 aa25.97■■□□□ 1.75
SHKBP1-212ENST00000596163 A2ML1A8K2U0 1454 aa25.97■■□□□ 1.75
SHKBP1-212ENST00000596163 ERVK-7P63135 1459 aa25.97■■□□□ 1.75
SHKBP1-212ENST00000596163 NLRP1Q9C000 1473 aa25.97■■□□□ 1.75
SHKBP1-212ENST00000596163 HFM1A2PYH4 1435 aa25.96■■□□□ 1.75
SHKBP1-212ENST00000596163 MYO3AQ8NEV4 1616 aa25.96■■□□□ 1.75
SHKBP1-212ENST00000596163 SPATA31D1Q6ZQQ2 1576 aa25.95■■□□□ 1.75
SHKBP1-212ENST00000596163 THEMISQ8N1K5 641 aaPredicted RBP25.94■■□□□ 1.74
SHKBP1-212ENST00000596163 UNC13BO14795 1591 aa25.94■■□□□ 1.74
SHKBP1-212ENST00000596163 CEP170BQ9Y4F5 1589 aaPredicted RBP25.94■■□□□ 1.74
SHKBP1-212ENST00000596163 RPRD2Q5VT52 1461 aaKnown RBP25.9■■□□□ 1.74
SHKBP1-212ENST00000596163 ZNF142P52746 1687 aaPredicted RBP25.9■■□□□ 1.74
SHKBP1-212ENST00000596163 EFCAB6Q5THR3 1501 aa25.89■■□□□ 1.74
SHKBP1-212ENST00000596163 PKD2Q13563 968 aa25.89■■□□□ 1.74
SHKBP1-212ENST00000596163 ILDR1Q86SU0 546 aaPredicted RBP25.89■■□□□ 1.74
SHKBP1-212ENST00000596163 TRIM52Q96A61 297 aa25.87■■□□□ 1.73
SHKBP1-212ENST00000596163 ACIN1Q9UKV3 1341 aaKnown RBP25.87■■□□□ 1.73
SHKBP1-212ENST00000596163 PLA2R1Q13018 1463 aa25.86■■□□□ 1.73
SHKBP1-212ENST00000596163 SLC52A1Q9NWF4 448 aa25.86■■□□□ 1.73
SHKBP1-212ENST00000596163 TET3O43151 1660 aa25.85■■□□□ 1.73
SHKBP1-212ENST00000596163 GCC2Q8IWJ2 1684 aa25.85■■□□□ 1.73
SHKBP1-212ENST00000596163 NOS1P29475 1434 aa25.84■■□□□ 1.73
SHKBP1-212ENST00000596163 UGGT1Q9NYU2 1555 aa25.84■■□□□ 1.73
SHKBP1-212ENST00000596163 STAG3Q9UJ98 1225 aa25.84■■□□□ 1.73
SHKBP1-212ENST00000596163 IQGAP3Q86VI3 1631 aa25.84■■□□□ 1.73
SHKBP1-212ENST00000596163 ANKLE2Q86XL3 938 aa25.83■■□□□ 1.73
SHKBP1-212ENST00000596163 NCKAP5LQ9HCH0 1330 aa25.83■■□□□ 1.73
SHKBP1-212ENST00000596163 PTPRTO14522 1441 aa25.81■■□□□ 1.72
SHKBP1-212ENST00000596163 IDI1Q13907 227 aa25.81■■□□□ 1.72
SHKBP1-212ENST00000596163 CFAP65Q6ZU64 1925 aaKnown RBP25.8■■□□□ 1.72
SHKBP1-212ENST00000596163 STRCQ7RTU9 1775 aa25.77■■□□□ 1.72
SHKBP1-212ENST00000596163 SETD5Q9C0A6 1442 aa25.76■■□□□ 1.71
SHKBP1-212ENST00000596163 SLC4A1APQ9BWU0 796 aaKnown RBP25.75■■□□□ 1.71
SHKBP1-212ENST00000596163 EID1Q9Y6B2 187 aa25.73■■□□□ 1.71
SHKBP1-212ENST00000596163 SYNMO15061 1565 aa25.73■■□□□ 1.71
SHKBP1-212ENST00000596163 E9PCH4 1651 aa25.71■■□□□ 1.71
SHKBP1-212ENST00000596163 TXNDC2Q86VQ3 553 aa25.69■■□□□ 1.7
SHKBP1-212ENST00000596163 HDGFP51858 240 aaKnown RBP25.68■■□□□ 1.7
SHKBP1-212ENST00000596163 UBR1Q8IWV7 1749 aa25.68■■□□□ 1.7
SHKBP1-212ENST00000596163 PIK3C2BO00750 1634 aa25.67■■□□□ 1.7
SHKBP1-212ENST00000596163 CHGAP10645 457 aaKnown RBP25.67■■□□□ 1.7
SHKBP1-212ENST00000596163 TMEM2Q9UHN6 1383 aa25.67■■□□□ 1.7
SHKBP1-212ENST00000596163 MPHOSPH9Q99550 1183 aa25.65■■□□□ 1.7
SHKBP1-212ENST00000596163 KDM5AP29375 1690 aaKnown RBP25.64■■□□□ 1.7
SHKBP1-212ENST00000596163 NPHP4O75161 1426 aaPredicted RBP25.64■■□□□ 1.7
SHKBP1-212ENST00000596163 SLIT1O75093 1534 aa25.64■■□□□ 1.7
SHKBP1-212ENST00000596163 HRCP23327 699 aa25.64■■□□□ 1.7
SHKBP1-212ENST00000596163 MED14O60244 1454 aa25.64■■□□□ 1.69
SHKBP1-212ENST00000596163 ARHGAP23Q9P227 1491 aa25.64■■□□□ 1.69
SHKBP1-212ENST00000596163 ADGRB3O60242 1522 aa25.63■■□□□ 1.69
SHKBP1-212ENST00000596163 RAB3GAP2Q9H2M9 1393 aa25.63■■□□□ 1.69
SHKBP1-212ENST00000596163 SCAF11Q99590 1463 aaKnown RBP25.62■■□□□ 1.69
SHKBP1-212ENST00000596163 LTKP29376 864 aa25.62■■□□□ 1.69
SHKBP1-212ENST00000596163 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.59■■□□□ 1.69
SHKBP1-212ENST00000596163 POLR1AO95602 1720 aaPredicted RBP25.59■■□□□ 1.69
SHKBP1-212ENST00000596163 NEURL4Q96JN8 1562 aa25.58■■□□□ 1.69
SHKBP1-212ENST00000596163 CERKQ8TCT0 537 aa25.58■■□□□ 1.69
SHKBP1-212ENST00000596163 PPP1R15AO75807 674 aaPredicted RBP25.55■■□□□ 1.68
SHKBP1-212ENST00000596163 SPHKAPQ2M3C7 1700 aa25.54■■□□□ 1.68
SHKBP1-212ENST00000596163 TRPM2O94759 1503 aa25.54■■□□□ 1.68
SHKBP1-212ENST00000596163 ZNF335Q9H4Z2 1342 aaPredicted RBP25.54■■□□□ 1.68
SHKBP1-212ENST00000596163 RIMS2Q9UQ26 1411 aa25.54■■□□□ 1.68
SHKBP1-212ENST00000596163 TMEM131LA2VDJ0 1609 aa25.53■■□□□ 1.68
SHKBP1-212ENST00000596163 BCANQ96GW7 911 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms