RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 IQGAP3Q86VI3 1631 aa21.76■■□□□ 1.07
SHKBP1-211ENST00000595945 REREQ9P2R6 1566 aa21.75■■□□□ 1.07
SHKBP1-211ENST00000595945 MYT1LQ9UL68 1186 aa21.75■■□□□ 1.07
SHKBP1-211ENST00000595945 RNF17Q9BXT8 1623 aaKnown RBP21.75■■□□□ 1.07
SHKBP1-211ENST00000595945 ARHGEF40Q8TER5 1519 aa21.75■■□□□ 1.07
SHKBP1-211ENST00000595945 MROH1Q8NDA8 1641 aa21.74■■□□□ 1.07
SHKBP1-211ENST00000595945 VWDEQ8N2E2 1590 aa21.72■■□□□ 1.07
SHKBP1-211ENST00000595945 ATP10AO60312 1499 aa21.71■■□□□ 1.07
SHKBP1-211ENST00000595945 MPHOSPH9Q99550 1183 aa21.71■■□□□ 1.07
SHKBP1-211ENST00000595945 NUP155O75694 1391 aa21.71■■□□□ 1.07
SHKBP1-211ENST00000595945 PRDM15P57071 1507 aaPredicted RBP21.7■■□□□ 1.07
SHKBP1-211ENST00000595945 FAM135AQ9P2D6 1515 aa21.7■■□□□ 1.06
SHKBP1-211ENST00000595945 SIGLEC1Q9BZZ2 1709 aa21.67■■□□□ 1.06
SHKBP1-211ENST00000595945 AGLP35573 1532 aa21.67■■□□□ 1.06
SHKBP1-211ENST00000595945 ZEB1P37275 1124 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-211ENST00000595945 SLC4A1APQ9BWU0 796 aaKnown RBP21.65■■□□□ 1.06
SHKBP1-211ENST00000595945 KIF3BO15066 747 aa21.64■■□□□ 1.05
SHKBP1-211ENST00000595945 TET3O43151 1660 aa21.63■■□□□ 1.05
SHKBP1-211ENST00000595945 LMTK2Q8IWU2 1503 aa21.61■■□□□ 1.05
SHKBP1-211ENST00000595945 CEP152O94986 1710 aa21.61■■□□□ 1.05
SHKBP1-211ENST00000595945 ANKRD30BQ9BXX2 1392 aa21.6■■□□□ 1.05
SHKBP1-211ENST00000595945 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.59■■□□□ 1.05
SHKBP1-211ENST00000595945 E9PCH4 1651 aa21.59■■□□□ 1.05
SHKBP1-211ENST00000595945 KANK1Q14678 1352 aa21.59■■□□□ 1.05
SHKBP1-211ENST00000595945 PKD2Q13563 968 aa21.58■■□□□ 1.05
SHKBP1-211ENST00000595945 ZC3H13Q5T200 1668 aaKnown RBP21.56■■□□□ 1.04
SHKBP1-211ENST00000595945 FOXD1Q16676 465 aa21.55■■□□□ 1.04
SHKBP1-211ENST00000595945 ABCC3O15438 1527 aa21.55■■□□□ 1.04
SHKBP1-211ENST00000595945 EFCAB6Q5THR3 1501 aa21.54■■□□□ 1.04
SHKBP1-211ENST00000595945 SIN3AQ96ST3 1273 aa21.53■■□□□ 1.04
SHKBP1-211ENST00000595945 CAMSAP1Q5T5Y3 1602 aa21.51■■□□□ 1.03
SHKBP1-211ENST00000595945 SPHKAPQ2M3C7 1700 aa21.5■■□□□ 1.03
SHKBP1-211ENST00000595945 GGT6Q6P531 493 aa21.5■■□□□ 1.03
SHKBP1-211ENST00000595945 PLA2R1Q13018 1463 aa21.5■■□□□ 1.03
SHKBP1-211ENST00000595945 RPRD2Q5VT52 1461 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-211ENST00000595945 PTPRTO14522 1441 aa21.46■■□□□ 1.03
SHKBP1-211ENST00000595945 PPP6R1Q9UPN7 881 aa21.46■■□□□ 1.03
SHKBP1-211ENST00000595945 CFAP65Q6ZU64 1925 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-211ENST00000595945 TIMELESSQ9UNS1 1208 aa21.45■■□□□ 1.02
SHKBP1-211ENST00000595945 ARHGAP31Q2M1Z3 1444 aa21.45■■□□□ 1.02
SHKBP1-211ENST00000595945 TRPM2O94759 1503 aa21.45■■□□□ 1.02
SHKBP1-211ENST00000595945 CLTCQ00610 1675 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-211ENST00000595945 NEUROD1Q13562 356 aa21.43■■□□□ 1.02
SHKBP1-211ENST00000595945 WASHC2CQ9Y4E1 1318 aa21.43■■□□□ 1.02
SHKBP1-211ENST00000595945 NPATQ14207 1427 aa21.42■■□□□ 1.02
SHKBP1-211ENST00000595945 CLTCL1P53675 1640 aa21.38■■□□□ 1.01
SHKBP1-211ENST00000595945 MROH2AA6NES4 1674 aa21.37■■□□□ 1.01
SHKBP1-211ENST00000595945 PREX1Q8TCU6 1659 aa21.37■■□□□ 1.01
SHKBP1-211ENST00000595945 CCDC144AA2RUR9 1427 aa21.37■■□□□ 1.01
SHKBP1-211ENST00000595945 NOS1P29475 1434 aa21.37■■□□□ 1.01
SHKBP1-211ENST00000595945 TONSLQ96HA7 1378 aa21.36■■□□□ 1.01
SHKBP1-211ENST00000595945 ARID4BQ4LE39 1312 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-211ENST00000595945 CNTLNQ9NXG0 1405 aa21.34■■□□□ 1.01
SHKBP1-211ENST00000595945 SYNMO15061 1565 aa21.34■■□□□ 1.01
SHKBP1-211ENST00000595945 FER1L4A9Z1Z3 1794 aa21.33■■□□□ 1.01
SHKBP1-211ENST00000595945 MLECQ14165 292 aa21.33■■□□□ 1.01
SHKBP1-211ENST00000595945 PIK3C2BO00750 1634 aa21.33■■□□□ 1
SHKBP1-211ENST00000595945 NEURL4Q96JN8 1562 aa21.32■■□□□ 1
SHKBP1-211ENST00000595945 KIF1BO60333 1816 aa21.32■■□□□ 1
SHKBP1-211ENST00000595945 SPATA31D1Q6ZQQ2 1576 aa21.29■■□□□ 1
SHKBP1-211ENST00000595945 UGGT1Q9NYU2 1555 aa21.29■■□□□ 1
SHKBP1-211ENST00000595945 ERVK-7P63135 1459 aa21.29■■□□□ 1
SHKBP1-211ENST00000595945 PPP1R15AO75807 674 aaPredicted RBP21.29■■□□□ 1
SHKBP1-211ENST00000595945 SPATA31E1Q6ZUB1 1445 aa21.29■■□□□ 1
SHKBP1-211ENST00000595945 L3MBTL2Q969R5 705 aa21.28■■□□□ 1
SHKBP1-211ENST00000595945 ADAMTSL3P82987 1691 aa21.28■■□□□ 1
SHKBP1-211ENST00000595945 ZMYM3Q14202 1370 aa21.25■□□□□ 0.99
SHKBP1-211ENST00000595945 C3P01024 1663 aa21.24■□□□□ 0.99
SHKBP1-211ENST00000595945 ADGRB3O60242 1522 aa21.23■□□□□ 0.99
SHKBP1-211ENST00000595945 MADDQ8WXG6 1647 aa21.22■□□□□ 0.99
SHKBP1-211ENST00000595945 ESF1Q9H501 851 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-211ENST00000595945 IFT172Q9UG01 1749 aa21.21■□□□□ 0.99
SHKBP1-211ENST00000595945 FBXO31Q5XUX0 539 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-211ENST00000595945 MYO5BQ9ULV0 1848 aa21.2■□□□□ 0.98
SHKBP1-211ENST00000595945 RIMS1Q86UR5 1692 aaKnown RBP21.19■□□□□ 0.98
SHKBP1-211ENST00000595945 UHRF1BP1Q6BDS2 1440 aa21.19■□□□□ 0.98
SHKBP1-211ENST00000595945 SLC52A1Q9NWF4 448 aa21.17■□□□□ 0.98
SHKBP1-211ENST00000595945 TMEM131LA2VDJ0 1609 aa21.17■□□□□ 0.98
SHKBP1-211ENST00000595945 PPLO60437 1756 aa21.15■□□□□ 0.98
SHKBP1-211ENST00000595945 IDI1Q13907 227 aa21.13■□□□□ 0.97
SHKBP1-211ENST00000595945 NBPF8Q3BBV2 869 aa21.13■□□□□ 0.97
SHKBP1-211ENST00000595945 RGL3Q3MIN7 710 aa21.13■□□□□ 0.97
SHKBP1-211ENST00000595945 KDM5AP29375 1690 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-211ENST00000595945 TNRQ92752 1358 aa21.11■□□□□ 0.97
SHKBP1-211ENST00000595945 DCAF11Q8TEB1 546 aa21.11■□□□□ 0.97
SHKBP1-211ENST00000595945 MYOM2P54296 1465 aa21.1■□□□□ 0.97
SHKBP1-211ENST00000595945 STAC3Q96MF2 364 aa21.1■□□□□ 0.97
SHKBP1-211ENST00000595945 PRAG1Q86YV5 1406 aa21.1■□□□□ 0.97
SHKBP1-211ENST00000595945 TRPM1Q7Z4N2 1603 aa21.09■□□□□ 0.97
SHKBP1-211ENST00000595945 SETD1BQ9UPS6 1966 aaKnown RBP21.08■□□□□ 0.96
SHKBP1-211ENST00000595945 NEXMIFQ5QGS0 1516 aa21.08■□□□□ 0.96
SHKBP1-211ENST00000595945 CEBPAP49715 358 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-211ENST00000595945 RALGAPBQ86X10 1494 aa21.07■□□□□ 0.96
SHKBP1-211ENST00000595945 NRXN1Q9ULB1 1477 aa21.07■□□□□ 0.96
SHKBP1-211ENST00000595945 UBR1Q8IWV7 1749 aa21.07■□□□□ 0.96
SHKBP1-211ENST00000595945 RPGRIP1LQ68CZ1 1315 aa21.06■□□□□ 0.96
SHKBP1-211ENST00000595945 KDM2AQ9Y2K7 1162 aa21.06■□□□□ 0.96
SHKBP1-211ENST00000595945 A2ML1A8K2U0 1454 aa21.06■□□□□ 0.96
SHKBP1-211ENST00000595945 NLRP1Q9C000 1473 aa21.06■□□□□ 0.96
SHKBP1-211ENST00000595945 KIAA1210Q9ULL0 1709 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms