RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 ILDR1Q86SU0 546 aaPredicted RBP13.88□□□□□ -0.19
VPS25-205ENST00000590339 REREQ9P2R6 1566 aa13.88□□□□□ -0.19
VPS25-205ENST00000590339 FER1L4A9Z1Z3 1794 aa13.87□□□□□ -0.19
VPS25-205ENST00000590339 ZMYM3Q14202 1370 aa13.86□□□□□ -0.19
VPS25-205ENST00000590339 DHX29Q7Z478 1369 aaKnown RBP13.85□□□□□ -0.19
VPS25-205ENST00000590339 RTEL1-TNFRSF6BF6WH68 1400 aa13.85□□□□□ -0.19
VPS25-205ENST00000590339 CCDC141Q6ZP82 1450 aa13.85□□□□□ -0.19
VPS25-205ENST00000590339 MAST1Q9Y2H9 1570 aa13.84□□□□□ -0.19
VPS25-205ENST00000590339 CNTLNQ9NXG0 1405 aa13.83□□□□□ -0.2
VPS25-205ENST00000590339 UHRF1BP1Q6BDS2 1440 aa13.82□□□□□ -0.2
VPS25-205ENST00000590339 INO80Q9ULG1 1556 aaPredicted RBP13.82□□□□□ -0.2
VPS25-205ENST00000590339 PPP6R1Q9UPN7 881 aa13.81□□□□□ -0.2
VPS25-205ENST00000590339 WASHC2CQ9Y4E1 1318 aa13.81□□□□□ -0.2
VPS25-205ENST00000590339 RRP7BPQ9NSQ0 103 aa13.8□□□□□ -0.2
VPS25-205ENST00000590339 NCOA1Q15788 1441 aa13.8□□□□□ -0.2
VPS25-205ENST00000590339 FBXO31Q5XUX0 539 aaPredicted RBP13.79□□□□□ -0.2
VPS25-205ENST00000590339 CHIC2Q9UKJ5 165 aa13.79□□□□□ -0.2
VPS25-205ENST00000590339 PLXNC1O60486 1568 aa13.79□□□□□ -0.2
VPS25-205ENST00000590339 ACIN1Q9UKV3 1341 aaKnown RBP13.77□□□□□ -0.21
VPS25-205ENST00000590339 DMRT2Q9Y5R5 561 aa13.77□□□□□ -0.21
VPS25-205ENST00000590339 KDM5DQ9BY66 1539 aa13.76□□□□□ -0.21
VPS25-205ENST00000590339 C3P01024 1663 aa13.75□□□□□ -0.21
VPS25-205ENST00000590339 ANKRD30AQ9BXX3 1397 aa13.74□□□□□ -0.21
VPS25-205ENST00000590339 NCKAP5LQ9HCH0 1330 aa13.74□□□□□ -0.21
VPS25-205ENST00000590339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.74□□□□□ -0.217e-7■■□□□ 11.5
VPS25-205ENST00000590339 NPATQ14207 1427 aa13.73□□□□□ -0.21
VPS25-205ENST00000590339 PZPP20742 1482 aa13.73□□□□□ -0.21
VPS25-205ENST00000590339 CLTCQ00610 1675 aaKnown RBP13.72□□□□□ -0.21
VPS25-205ENST00000590339 FBXO41Q8TF61 875 aa13.72□□□□□ -0.21
VPS25-205ENST00000590339 PREX1Q8TCU6 1659 aa13.72□□□□□ -0.21
VPS25-205ENST00000590339 CERKQ8TCT0 537 aa13.71□□□□□ -0.21
VPS25-205ENST00000590339 UNC13BO14795 1591 aa13.71□□□□□ -0.22
VPS25-205ENST00000590339 KIF15Q9NS87 1388 aa13.71□□□□□ -0.22
VPS25-205ENST00000590339 SETD1BQ9UPS6 1966 aaKnown RBP13.7□□□□□ -0.22
VPS25-205ENST00000590339 ANKRD50Q9ULJ7 1429 aa13.7□□□□□ -0.22
VPS25-205ENST00000590339 TIMELESSQ9UNS1 1208 aa13.69□□□□□ -0.22
VPS25-205ENST00000590339 TNRQ92752 1358 aa13.69□□□□□ -0.22
VPS25-205ENST00000590339 MROH2AA6NES4 1674 aa13.66□□□□□ -0.22
VPS25-205ENST00000590339 DUOX2Q9NRD8 1548 aa13.65□□□□□ -0.22
VPS25-205ENST00000590339 ZNF316A6NFI3 1004 aaPredicted RBP13.65□□□□□ -0.22
VPS25-205ENST00000590339 PKD2Q13563 968 aa13.65□□□□□ -0.22
VPS25-205ENST00000590339 CAMSAP1Q5T5Y3 1602 aa13.64□□□□□ -0.23
VPS25-205ENST00000590339 THEMISQ8N1K5 641 aaPredicted RBP13.64□□□□□ -0.23
VPS25-205ENST00000590339 SIN3AQ96ST3 1273 aa13.64□□□□□ -0.23
VPS25-205ENST00000590339 PTPRTO14522 1441 aa13.64□□□□□ -0.23
VPS25-205ENST00000590339 IQGAP3Q86VI3 1631 aa13.63□□□□□ -0.23
VPS25-205ENST00000590339 STRCQ7RTU9 1775 aa13.63□□□□□ -0.23
VPS25-205ENST00000590339 RPRD2Q5VT52 1461 aaKnown RBP13.62□□□□□ -0.23
VPS25-205ENST00000590339 ANKRD30BQ9BXX2 1392 aa13.62□□□□□ -0.23
VPS25-205ENST00000590339 MPHOSPH9Q99550 1183 aa13.62□□□□□ -0.23
VPS25-205ENST00000590339 ERBINQ96RT1 1412 aa13.62□□□□□ -0.23
VPS25-205ENST00000590339 A2ML1A8K2U0 1454 aa13.61□□□□□ -0.23
VPS25-205ENST00000590339 KANK1Q14678 1352 aa13.61□□□□□ -0.23
VPS25-205ENST00000590339 ANKLE2Q86XL3 938 aa13.61□□□□□ -0.23
VPS25-205ENST00000590339 TRIM52Q96A61 297 aa13.61□□□□□ -0.23
VPS25-205ENST00000590339 ZNF335Q9H4Z2 1342 aaPredicted RBP13.61□□□□□ -0.23
VPS25-205ENST00000590339 DEPDC5O75140 1603 aa13.61□□□□□ -0.23
VPS25-205ENST00000590339 ABCC3O15438 1527 aa13.6□□□□□ -0.23
VPS25-205ENST00000590339 CEP170BQ9Y4F5 1589 aaPredicted RBP13.6□□□□□ -0.23
VPS25-205ENST00000590339 TONSLQ96HA7 1378 aa13.59□□□□□ -0.23
VPS25-205ENST00000590339 MYO3AQ8NEV4 1616 aa13.59□□□□□ -0.23
VPS25-205ENST00000590339 EIF2AK4Q9P2K8 1649 aaKnown RBP13.59□□□□□ -0.23
VPS25-205ENST00000590339 FAM135AQ9P2D6 1515 aa13.59□□□□□ -0.23
VPS25-205ENST00000590339 STAG3Q9UJ98 1225 aa13.58□□□□□ -0.24
VPS25-205ENST00000590339 PLA2R1Q13018 1463 aa13.57□□□□□ -0.24
VPS25-205ENST00000590339 NEUROD1Q13562 356 aa13.56□□□□□ -0.24
VPS25-205ENST00000590339 RNF17Q9BXT8 1623 aaKnown RBP13.56□□□□□ -0.24
VPS25-205ENST00000590339 ERVK-7P63135 1459 aa13.55□□□□□ -0.24
VPS25-205ENST00000590339 NLRP1Q9C000 1473 aa13.55□□□□□ -0.24
VPS25-205ENST00000590339 MROH1Q8NDA8 1641 aa13.55□□□□□ -0.24
VPS25-205ENST00000590339 PPP1R15AO75807 674 aaPredicted RBP13.55□□□□□ -0.24
VPS25-205ENST00000590339 UGGT1Q9NYU2 1555 aa13.54□□□□□ -0.24
VPS25-205ENST00000590339 IDI1Q13907 227 aa13.54□□□□□ -0.24
VPS25-205ENST00000590339 SLC4A1APQ9BWU0 796 aaKnown RBP13.54□□□□□ -0.24
VPS25-205ENST00000590339 TXNDC2Q86VQ3 553 aa13.53□□□□□ -0.24
VPS25-205ENST00000590339 NUP155O75694 1391 aa13.53□□□□□ -0.24
VPS25-205ENST00000590339 VWDEQ8N2E2 1590 aa13.53□□□□□ -0.24
VPS25-205ENST00000590339 ARHGAP31Q2M1Z3 1444 aa13.52□□□□□ -0.25
VPS25-205ENST00000590339 ZNF142P52746 1687 aaPredicted RBP13.51□□□□□ -0.25
VPS25-205ENST00000590339 SPATA31D1Q6ZQQ2 1576 aa13.51□□□□□ -0.25
VPS25-205ENST00000590339 PRDM15P57071 1507 aaPredicted RBP13.51□□□□□ -0.25
VPS25-205ENST00000590339 LTKP29376 864 aa13.51□□□□□ -0.25
VPS25-205ENST00000590339 DIEXFQ68CQ4 756 aaKnown RBP13.51□□□□□ -0.25
VPS25-205ENST00000590339 SENP3Q9H4L4 574 aaPredicted RBP13.51□□□□□ -0.25
VPS25-205ENST00000590339 CEP152O94986 1710 aa13.5□□□□□ -0.25
VPS25-205ENST00000590339 LTBP4Q8N2S1 1624 aa13.5□□□□□ -0.25
VPS25-205ENST00000590339 UBAP1LF5GYI3 381 aa13.5□□□□□ -0.25
VPS25-205ENST00000590339 FOXD1Q16676 465 aa13.5□□□□□ -0.25
VPS25-205ENST00000590339 EID1Q9Y6B2 187 aa13.5□□□□□ -0.25
VPS25-205ENST00000590339 TET3O43151 1660 aa13.5□□□□□ -0.25
VPS25-205ENST00000590339 NPHP4O75161 1426 aaPredicted RBP13.49□□□□□ -0.25
VPS25-205ENST00000590339 CHGAP10645 457 aaKnown RBP13.49□□□□□ -0.25
VPS25-205ENST00000590339 ZC3H13Q5T200 1668 aaKnown RBP13.49□□□□□ -0.25
VPS25-205ENST00000590339 CFAP65Q6ZU64 1925 aaKnown RBP13.48□□□□□ -0.25
VPS25-205ENST00000590339 E9PCH4 1651 aa13.47□□□□□ -0.25
VPS25-205ENST00000590339 BCANQ96GW7 911 aa13.47□□□□□ -0.25
VPS25-205ENST00000590339 SLC52A1Q9NWF4 448 aa13.46□□□□□ -0.25
VPS25-205ENST00000590339 SCAF1Q9H7N4 1312 aaKnown RBP13.45□□□□□ -0.26
VPS25-205ENST00000590339 LMTK2Q8IWU2 1503 aa13.45□□□□□ -0.26
VPS25-205ENST00000590339 PIP4K2BP78356 416 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms