RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 GGT6Q6P531 493 aa23.36■■□□□ 1.33
SS18-216ENST00000580751 PPP6R1Q9UPN7 881 aa23.36■■□□□ 1.33
SS18-216ENST00000580751 HFM1A2PYH4 1435 aa23.35■■□□□ 1.33
SS18-216ENST00000580751 ESF1Q9H501 851 aaKnown RBP23.34■■□□□ 1.33
SS18-216ENST00000580751 CNTLNQ9NXG0 1405 aa23.33■■□□□ 1.33
SS18-216ENST00000580751 DEPDC5O75140 1603 aa23.33■■□□□ 1.33
SS18-216ENST00000580751 PRDM15P57071 1507 aaPredicted RBP23.33■■□□□ 1.32
SS18-216ENST00000580751 NAIPQ13075 1403 aa23.33■■□□□ 1.32
SS18-216ENST00000580751 RIMS1Q86UR5 1692 aaKnown RBP23.32■■□□□ 1.32
SS18-216ENST00000580751 MROH1Q8NDA8 1641 aa23.32■■□□□ 1.32
SS18-216ENST00000580751 KDM5DQ9BY66 1539 aa23.31■■□□□ 1.32
SS18-216ENST00000580751 ZC3H13Q5T200 1668 aaKnown RBP23.28■■□□□ 1.32
SS18-216ENST00000580751 PTPRMP28827 1452 aa23.28■■□□□ 1.32
SS18-216ENST00000580751 MROH2AA6NES4 1674 aa23.28■■□□□ 1.32
SS18-216ENST00000580751 CLTCQ00610 1675 aaKnown RBP23.27■■□□□ 1.32
SS18-216ENST00000580751 UNC13BO14795 1591 aa23.27■■□□□ 1.32
SS18-216ENST00000580751 KANK1Q14678 1352 aa23.27■■□□□ 1.31
SS18-216ENST00000580751 WASHC2CQ9Y4E1 1318 aa23.26■■□□□ 1.31
SS18-216ENST00000580751 ABCC3O15438 1527 aa23.25■■□□□ 1.31
SS18-216ENST00000580751 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.23■■□□□ 1.31
SS18-216ENST00000580751 VWDEQ8N2E2 1590 aa23.23■■□□□ 1.31
SS18-216ENST00000580751 PCGF6Q9BYE7 350 aa23.21■■□□□ 1.31
SS18-216ENST00000580751 CEP152O94986 1710 aa23.2■■□□□ 1.3
SS18-216ENST00000580751 C3P01024 1663 aa23.19■■□□□ 1.3
SS18-216ENST00000580751 LMTK2Q8IWU2 1503 aa23.19■■□□□ 1.3
SS18-216ENST00000580751 SETD5Q9C0A6 1442 aa23.19■■□□□ 1.3
SS18-216ENST00000580751 ZMYM3Q14202 1370 aa23.19■■□□□ 1.3
SS18-216ENST00000580751 CAMSAP1Q5T5Y3 1602 aa23.18■■□□□ 1.3
SS18-216ENST00000580751 IQGAP3Q86VI3 1631 aa23.17■■□□□ 1.3
SS18-216ENST00000580751 NUP155O75694 1391 aa23.15■■□□□ 1.3
SS18-216ENST00000580751 ACIN1Q9UKV3 1341 aaKnown RBP23.15■■□□□ 1.3
SS18-216ENST00000580751 PZPP20742 1482 aa23.15■■□□□ 1.3
SS18-216ENST00000580751 AEBP2Q6ZN18 517 aaPredicted RBP23.14■■□□□ 1.29
SS18-216ENST00000580751 TET3O43151 1660 aa23.13■■□□□ 1.29
SS18-216ENST00000580751 ARHGAP31Q2M1Z3 1444 aa23.13■■□□□ 1.29
SS18-216ENST00000580751 EFCAB6Q5THR3 1501 aa23.13■■□□□ 1.29
SS18-216ENST00000580751 CEBPAP49715 358 aaPredicted RBP23.12■■□□□ 1.29
SS18-216ENST00000580751 NPATQ14207 1427 aa23.12■■□□□ 1.29
SS18-216ENST00000580751 PLPPR3Q6T4P5 718 aa23.12■■□□□ 1.29
SS18-216ENST00000580751 RAB3GAP2Q9H2M9 1393 aa23.12■■□□□ 1.29
SS18-216ENST00000580751 TRIM52Q96A61 297 aa23.08■■□□□ 1.29
SS18-216ENST00000580751 RPRD2Q5VT52 1461 aaKnown RBP23.08■■□□□ 1.29
SS18-216ENST00000580751 HRCP23327 699 aa23.05■■□□□ 1.28
SS18-216ENST00000580751 SPATA31D1Q6ZQQ2 1576 aa23.05■■□□□ 1.28
SS18-216ENST00000580751 ERVK-7P63135 1459 aa23.05■■□□□ 1.28
SS18-216ENST00000580751 SETD1BQ9UPS6 1966 aaKnown RBP23.04■■□□□ 1.28
SS18-216ENST00000580751 PREX1Q8TCU6 1659 aa23.03■■□□□ 1.28
SS18-216ENST00000580751 FBXO31Q5XUX0 539 aaPredicted RBP23.02■■□□□ 1.28
SS18-216ENST00000580751 E9PCH4 1651 aa23.02■■□□□ 1.28
SS18-216ENST00000580751 TNRQ92752 1358 aa23.01■■□□□ 1.27
SS18-216ENST00000580751 MYO3AQ8NEV4 1616 aa23■■□□□ 1.27
SS18-216ENST00000580751 UHRF1BP1Q6BDS2 1440 aa22.99■■□□□ 1.27
SS18-216ENST00000580751 SLC4A1APQ9BWU0 796 aaKnown RBP22.99■■□□□ 1.27
SS18-216ENST00000580751 CFAP65Q6ZU64 1925 aaKnown RBP22.97■■□□□ 1.27
SS18-216ENST00000580751 NOS1P29475 1434 aa22.97■■□□□ 1.27
SS18-216ENST00000580751 NLRP1Q9C000 1473 aa22.96■■□□□ 1.27
SS18-216ENST00000580751 ZNF142P52746 1687 aaPredicted RBP22.94■■□□□ 1.26
SS18-216ENST00000580751 LMTK3Q96Q04 1460 aa22.94■■□□□ 1.26
SS18-216ENST00000580751 MPHOSPH9Q99550 1183 aa22.94■■□□□ 1.26
SS18-216ENST00000580751 SYNMO15061 1565 aa22.93■■□□□ 1.26
SS18-216ENST00000580751 PKD2Q13563 968 aa22.93■■□□□ 1.26
SS18-216ENST00000580751 CEP170BQ9Y4F5 1589 aaPredicted RBP22.93■■□□□ 1.26
SS18-216ENST00000580751 A2ML1A8K2U0 1454 aa22.92■■□□□ 1.26
SS18-216ENST00000580751 SPHKAPQ2M3C7 1700 aa22.91■■□□□ 1.26
SS18-216ENST00000580751 PTPRTO14522 1441 aa22.9■■□□□ 1.26
SS18-216ENST00000580751 TRPM2O94759 1503 aa22.88■■□□□ 1.25
SS18-216ENST00000580751 SLC52A1Q9NWF4 448 aa22.88■■□□□ 1.25
SS18-216ENST00000580751 PIK3C2BO00750 1634 aa22.86■■□□□ 1.25
SS18-216ENST00000580751 UGGT1Q9NYU2 1555 aa22.84■■□□□ 1.25
SS18-216ENST00000580751 KDM5AP29375 1690 aaKnown RBP22.83■■□□□ 1.24
SS18-216ENST00000580751 PLA2R1Q13018 1463 aa22.82■■□□□ 1.24
SS18-216ENST00000580751 IDI1Q13907 227 aa22.82■■□□□ 1.24
SS18-216ENST00000580751 FOXD1Q16676 465 aa22.81■■□□□ 1.24
SS18-216ENST00000580751 UBR1Q8IWV7 1749 aa22.81■■□□□ 1.24
SS18-216ENST00000580751 ADGRB3O60242 1522 aa22.81■■□□□ 1.24
SS18-216ENST00000580751 STAG3Q9UJ98 1225 aa22.79■■□□□ 1.24
SS18-216ENST00000580751 CLTCL1P53675 1640 aa22.79■■□□□ 1.24
SS18-216ENST00000580751 HSPA2P54652 639 aa22.78■■□□□ 1.24
SS18-216ENST00000580751 THEMISQ8N1K5 641 aaPredicted RBP22.78■■□□□ 1.24
SS18-216ENST00000580751 CCDC144AA2RUR9 1427 aa22.77■■□□□ 1.24
SS18-216ENST00000580751 TMEM131LA2VDJ0 1609 aa22.75■■□□□ 1.23
SS18-216ENST00000580751 ANKRD30BQ9BXX2 1392 aa22.73■■□□□ 1.23
SS18-216ENST00000580751 KIF1BO60333 1816 aa22.72■■□□□ 1.23
SS18-216ENST00000580751 SLIT1O75093 1534 aa22.72■■□□□ 1.23
SS18-216ENST00000580751 CHGAP10645 457 aaKnown RBP22.71■■□□□ 1.23
SS18-216ENST00000580751 DHX57Q6P158 1386 aaKnown RBP22.71■■□□□ 1.23
SS18-216ENST00000580751 TMEM2Q9UHN6 1383 aa22.7■■□□□ 1.22
SS18-216ENST00000580751 ARHGAP23Q9P227 1491 aa22.7■■□□□ 1.22
SS18-216ENST00000580751 MYO5BQ9ULV0 1848 aa22.69■■□□□ 1.22
SS18-216ENST00000580751 POLR1AO95602 1720 aaPredicted RBP22.67■■□□□ 1.22
SS18-216ENST00000580751 ANKLE2Q86XL3 938 aa22.66■■□□□ 1.22
SS18-216ENST00000580751 STRCQ7RTU9 1775 aa22.66■■□□□ 1.22
SS18-216ENST00000580751 NEURL4Q96JN8 1562 aa22.65■■□□□ 1.22
SS18-216ENST00000580751 SCAF11Q99590 1463 aaKnown RBP22.65■■□□□ 1.22
SS18-216ENST00000580751 EID1Q9Y6B2 187 aa22.64■■□□□ 1.21
SS18-216ENST00000580751 ZFYVE9O95405 1425 aa22.63■■□□□ 1.21
SS18-216ENST00000580751 RIMS2Q9UQ26 1411 aa22.63■■□□□ 1.21
SS18-216ENST00000580751 HDGFP51858 240 aaKnown RBP22.62■■□□□ 1.21
SS18-216ENST00000580751 ZNF326Q5BKZ1 582 aaKnown RBP22.62■■□□□ 1.21
SS18-216ENST00000580751 SPATA31E1Q6ZUB1 1445 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms