RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 KIDINS220Q9ULH0 1771 aa12.74□□□□□ -0.37
SF3B3-212ENST00000568539 KIF15Q9NS87 1388 aa12.73□□□□□ -0.37
SF3B3-212ENST00000568539 HFM1A2PYH4 1435 aa12.72□□□□□ -0.37
SF3B3-212ENST00000568539 PCGF6Q9BYE7 350 aa12.72□□□□□ -0.37
SF3B3-212ENST00000568539 ABCA6Q8N139 1617 aa12.72□□□□□ -0.37
SF3B3-212ENST00000568539 DIP2CQ9Y2E4 1556 aa12.72□□□□□ -0.37
SF3B3-212ENST00000568539 ARHGEF40Q8TER5 1519 aa12.72□□□□□ -0.37
SF3B3-212ENST00000568539 NAIPQ13075 1403 aa12.71□□□□□ -0.37
SF3B3-212ENST00000568539 ADGBQ8N7X0 1667 aa12.71□□□□□ -0.37
SF3B3-212ENST00000568539 ATP10AO60312 1499 aa12.71□□□□□ -0.38
SF3B3-212ENST00000568539 LMTK3Q96Q04 1460 aa12.71□□□□□ -0.38
SF3B3-212ENST00000568539 DHX29Q7Z478 1369 aaKnown RBP12.7□□□□□ -0.38
SF3B3-212ENST00000568539 DUOX2Q9NRD8 1548 aa12.7□□□□□ -0.38
SF3B3-212ENST00000568539 A2MP01023 1474 aa12.7□□□□□ -0.38
SF3B3-212ENST00000568539 ERBINQ96RT1 1412 aa12.68□□□□□ -0.38
SF3B3-212ENST00000568539 SETD5Q9C0A6 1442 aa12.68□□□□□ -0.38
SF3B3-212ENST00000568539 ANKRD50Q9ULJ7 1429 aa12.68□□□□□ -0.38
SF3B3-212ENST00000568539 REREQ9P2R6 1566 aa12.68□□□□□ -0.38
SF3B3-212ENST00000568539 GCC2Q8IWJ2 1684 aa12.65□□□□□ -0.38
SF3B3-212ENST00000568539 AGLP35573 1532 aa12.64□□□□□ -0.39
SF3B3-212ENST00000568539 RAB3GAP2Q9H2M9 1393 aa12.64□□□□□ -0.39
SF3B3-212ENST00000568539 MYCNP04198 464 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-212ENST00000568539 KIF3BO15066 747 aa12.62□□□□□ -0.39
SF3B3-212ENST00000568539 HRCP23327 699 aa12.62□□□□□ -0.39
SF3B3-212ENST00000568539 ILDR2Q71H61 639 aa12.62□□□□□ -0.39
SF3B3-212ENST00000568539 EIF2AK4Q9P2K8 1649 aaKnown RBP12.62□□□□□ -0.39
SF3B3-212ENST00000568539 SIGLEC1Q9BZZ2 1709 aa12.61□□□□□ -0.39
SF3B3-212ENST00000568539 BCORL1Q5H9F3 1711 aa12.59□□□□□ -0.39
SF3B3-212ENST00000568539 MROH1Q8NDA8 1641 aa12.58□□□□□ -0.4
SF3B3-212ENST00000568539 RNF17Q9BXT8 1623 aaKnown RBP12.58□□□□□ -0.4
SF3B3-212ENST00000568539 ARID4BQ4LE39 1312 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-212ENST00000568539 ACIN1Q9UKV3 1341 aaKnown RBP12.58□□□□□ -0.4
SF3B3-212ENST00000568539 PRDM15P57071 1507 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-212ENST00000568539 UNC13BO14795 1591 aa12.57□□□□□ -0.4
SF3B3-212ENST00000568539 ATXN8OSP0DMR3 200 aa12.57□□□□□ -0.4
SF3B3-212ENST00000568539 GGT6Q6P531 493 aa12.57□□□□□ -0.4
SF3B3-212ENST00000568539 DEPDC5O75140 1603 aa12.57□□□□□ -0.4
SF3B3-212ENST00000568539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.56□□□□□ -0.45e-11■■■□□ 17.3
SF3B3-212ENST00000568539 NUP155O75694 1391 aa12.56□□□□□ -0.4
SF3B3-212ENST00000568539 MLECQ14165 292 aa12.55□□□□□ -0.4
SF3B3-212ENST00000568539 TRIM52Q96A61 297 aa12.55□□□□□ -0.4
SF3B3-212ENST00000568539 KDM5DQ9BY66 1539 aa12.55□□□□□ -0.4
SF3B3-212ENST00000568539 VWDEQ8N2E2 1590 aa12.55□□□□□ -0.4
SF3B3-212ENST00000568539 KANK1Q14678 1352 aa12.54□□□□□ -0.4
SF3B3-212ENST00000568539 PZPP20742 1482 aa12.53□□□□□ -0.4
SF3B3-212ENST00000568539 LMTK2Q8IWU2 1503 aa12.52□□□□□ -0.4
SF3B3-212ENST00000568539 FAM135AQ9P2D6 1515 aa12.52□□□□□ -0.4
SF3B3-212ENST00000568539 WASHC2CQ9Y4E1 1318 aa12.52□□□□□ -0.41
SF3B3-212ENST00000568539 DISP3Q9P2K9 1392 aa12.52□□□□□ -0.41
SF3B3-212ENST00000568539 PTPRMP28827 1452 aa12.52□□□□□ -0.41
SF3B3-212ENST00000568539 ABCC3O15438 1527 aa12.52□□□□□ -0.41
SF3B3-212ENST00000568539 SOCS7O14512 581 aa12.51□□□□□ -0.41
SF3B3-212ENST00000568539 IQGAP3Q86VI3 1631 aa12.51□□□□□ -0.41
SF3B3-212ENST00000568539 ADAMTSL3P82987 1691 aa12.51□□□□□ -0.41
SF3B3-212ENST00000568539 MPHOSPH9Q99550 1183 aa12.5□□□□□ -0.41
SF3B3-212ENST00000568539 MADDQ8WXG6 1647 aa12.49□□□□□ -0.41
SF3B3-212ENST00000568539 SPATA31D1Q6ZQQ2 1576 aa12.48□□□□□ -0.41
SF3B3-212ENST00000568539 CNTLNQ9NXG0 1405 aa12.48□□□□□ -0.41
SF3B3-212ENST00000568539 DHX57Q6P158 1386 aaKnown RBP12.48□□□□□ -0.41
SF3B3-212ENST00000568539 ESF1Q9H501 851 aaKnown RBP12.48□□□□□ -0.41
SF3B3-212ENST00000568539 ZC3H13Q5T200 1668 aaKnown RBP12.48□□□□□ -0.41
SF3B3-212ENST00000568539 ARHGAP31Q2M1Z3 1444 aa12.47□□□□□ -0.41
SF3B3-212ENST00000568539 PKD2Q13563 968 aa12.47□□□□□ -0.41
SF3B3-212ENST00000568539 EFCAB6Q5THR3 1501 aa12.47□□□□□ -0.41
SF3B3-212ENST00000568539 NPATQ14207 1427 aa12.45□□□□□ -0.42
SF3B3-212ENST00000568539 ZMYM3Q14202 1370 aa12.45□□□□□ -0.42
SF3B3-212ENST00000568539 TET3O43151 1660 aa12.45□□□□□ -0.42
SF3B3-212ENST00000568539 RPRD2Q5VT52 1461 aaKnown RBP12.45□□□□□ -0.42
SF3B3-212ENST00000568539 CAMSAP1Q5T5Y3 1602 aa12.44□□□□□ -0.42
SF3B3-212ENST00000568539 CEP152O94986 1710 aa12.44□□□□□ -0.42
SF3B3-212ENST00000568539 CLTCQ00610 1675 aaKnown RBP12.44□□□□□ -0.42
SF3B3-212ENST00000568539 RIMS1Q86UR5 1692 aaKnown RBP12.42□□□□□ -0.42
SF3B3-212ENST00000568539 MROH2AA6NES4 1674 aa12.42□□□□□ -0.42
SF3B3-212ENST00000568539 E9PCH4 1651 aa12.42□□□□□ -0.42
SF3B3-212ENST00000568539 FER1L4A9Z1Z3 1794 aa12.41□□□□□ -0.42
SF3B3-212ENST00000568539 PTPRTO14522 1441 aa12.41□□□□□ -0.42
SF3B3-212ENST00000568539 HSPA2P54652 639 aa12.41□□□□□ -0.42
SF3B3-212ENST00000568539 PLA2R1Q13018 1463 aa12.4□□□□□ -0.42
SF3B3-212ENST00000568539 NOS1P29475 1434 aa12.4□□□□□ -0.42
SF3B3-212ENST00000568539 CEBPAP49715 358 aaPredicted RBP12.4□□□□□ -0.42
SF3B3-212ENST00000568539 FBXO31Q5XUX0 539 aaPredicted RBP12.4□□□□□ -0.42
SF3B3-212ENST00000568539 ANKRD30BQ9BXX2 1392 aa12.4□□□□□ -0.42
SF3B3-212ENST00000568539 ERVK-7P63135 1459 aa12.4□□□□□ -0.43
SF3B3-212ENST00000568539 DCAF8L1A6NGE4 600 aa12.39□□□□□ -0.43
SF3B3-212ENST00000568539 CCER1Q8TC90 406 aaPredicted RBP12.39□□□□□ -0.43
SF3B3-212ENST00000568539 TRPM2O94759 1503 aa12.37□□□□□ -0.43
SF3B3-212ENST00000568539 CERKQ8TCT0 537 aa12.37□□□□□ -0.43
SF3B3-212ENST00000568539 CLSPNQ9HAW4 1339 aa12.37□□□□□ -0.43
SF3B3-212ENST00000568539 C3P01024 1663 aa12.36□□□□□ -0.43
SF3B3-212ENST00000568539 SYNMO15061 1565 aa12.35□□□□□ -0.43
SF3B3-212ENST00000568539 TNRQ92752 1358 aa12.35□□□□□ -0.43
SF3B3-212ENST00000568539 PREX1Q8TCU6 1659 aa12.35□□□□□ -0.43
SF3B3-212ENST00000568539 SLC52A1Q9NWF4 448 aa12.34□□□□□ -0.43
SF3B3-212ENST00000568539 CCDC144AA2RUR9 1427 aa12.34□□□□□ -0.43
SF3B3-212ENST00000568539 UGGT1Q9NYU2 1555 aa12.34□□□□□ -0.43
SF3B3-212ENST00000568539 SPHKAPQ2M3C7 1700 aa12.33□□□□□ -0.44
SF3B3-212ENST00000568539 IDI1Q13907 227 aa12.32□□□□□ -0.44
SF3B3-212ENST00000568539 SIN3AQ96ST3 1273 aa12.32□□□□□ -0.44
SF3B3-212ENST00000568539 U3KPZ7 1027 aaPredicted RBP12.32□□□□□ -0.44
SF3B3-212ENST00000568539 PIK3C2BO00750 1634 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms