RNA–Protein interactions for RNA: ENST00000567654.1

SF3B3-210, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 334 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-210ENST00000567654 HOXB3P14651 431 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-210ENST00000567654 CUL7Q14999 1698 aa9.18□□□□□ -0.94
SF3B3-210ENST00000567654 P3H3Q8IVL6 736 aa9.18□□□□□ -0.94
SF3B3-210ENST00000567654 CTTNBP2Q8WZ74 1663 aa9.18□□□□□ -0.94
SF3B3-210ENST00000567654 KHSRPQ92945 711 aaKnown RBP eCLIP9.16□□□□□ -0.943e-6■■■■□ 22.5
SF3B3-210ENST00000567654 IGF1RP08069 1367 aa9.15□□□□□ -0.94
SF3B3-210ENST00000567654 UBTFP17480 764 aaKnown RBP9.14□□□□□ -0.95
SF3B3-210ENST00000567654 OXER1Q8TDS5 423 aa9.14□□□□□ -0.95
SF3B3-210ENST00000567654 ERCC6Q03468 1493 aa9.14□□□□□ -0.95
SF3B3-210ENST00000567654 MAP3K9P80192 1104 aa9.13□□□□□ -0.95
SF3B3-210ENST00000567654 ARHGEF1Q92888 912 aaKnown RBP9.13□□□□□ -0.95
SF3B3-210ENST00000567654 EIF4G3O43432 1585 aaKnown RBP9.12□□□□□ -0.95
SF3B3-210ENST00000567654 DOK7Q18PE1 504 aa9.12□□□□□ -0.95
SF3B3-210ENST00000567654 ARSIQ5FYB1 569 aa9.12□□□□□ -0.95
SF3B3-210ENST00000567654 PCDHGA4Q9Y5G9 962 aa9.12□□□□□ -0.95
SF3B3-210ENST00000567654 TDRD9Q8NDG6 1382 aaKnown RBP9.12□□□□□ -0.95
SF3B3-210ENST00000567654 GAPVD1Q14C86 1478 aa9.11□□□□□ -0.95
SF3B3-210ENST00000567654 SEMA3EO15041 775 aa9.11□□□□□ -0.95
SF3B3-210ENST00000567654 NBR1Q14596 966 aa9.11□□□□□ -0.95
SF3B3-210ENST00000567654 PTCD2Q8WV60 388 aaKnown RBP9.11□□□□□ -0.95
SF3B3-210ENST00000567654 ADAMTS12P58397 1594 aa9.11□□□□□ -0.95
SF3B3-210ENST00000567654 ZNF608Q9ULD9 1512 aaPredicted RBP9.1□□□□□ -0.95
SF3B3-210ENST00000567654 SLC34A2O95436 690 aa9.1□□□□□ -0.95
SF3B3-210ENST00000567654 ZNF710Q8N1W2 664 aa9.1□□□□□ -0.95
SF3B3-210ENST00000567654 CLIP1P30622 1438 aa9.1□□□□□ -0.95
SF3B3-210ENST00000567654 CARMIL1Q5VZK9 1371 aa9.1□□□□□ -0.95
SF3B3-210ENST00000567654 ARAP1Q96P48 1450 aa9.09□□□□□ -0.95
SF3B3-210ENST00000567654 POTEMA6NI47 508 aa9.09□□□□□ -0.95
SF3B3-210ENST00000567654 NUDT7P0C024 238 aa9.09□□□□□ -0.95
SF3B3-210ENST00000567654 PCDH10Q9P2E7 1040 aa9.09□□□□□ -0.95
SF3B3-210ENST00000567654 EVI5O60447 810 aa9.08□□□□□ -0.96
SF3B3-210ENST00000567654 BCANQ96GW7 911 aa9.08□□□□□ -0.96
SF3B3-210ENST00000567654 ARIH1Q9Y4X5 557 aaPredicted RBP9.08□□□□□ -0.96
SF3B3-210ENST00000567654 AQRO60306 1485 aaKnown RBP eCLIP9.08□□□□□ -0.961e-8■■■■■ 36.6
SF3B3-210ENST00000567654 IFT140Q96RY7 1462 aa9.08□□□□□ -0.96
SF3B3-210ENST00000567654 MLLT3P42568 568 aaPredicted RBP9.07□□□□□ -0.96
SF3B3-210ENST00000567654 GPR153Q6NV75 609 aa9.07□□□□□ -0.96
SF3B3-210ENST00000567654 SNPHO15079 494 aa9.06□□□□□ -0.96
SF3B3-210ENST00000567654 PDIA6Q15084 440 aa9.06□□□□□ -0.96
SF3B3-210ENST00000567654 FAM163AQ96GL9 167 aaPredicted RBP9.06□□□□□ -0.96
SF3B3-210ENST00000567654 ARHGAP35Q9NRY4 1499 aa9.06□□□□□ -0.96
SF3B3-210ENST00000567654 RIMBP2O15034 1052 aa9.05□□□□□ -0.96
SF3B3-210ENST00000567654 TBC1D12O60347 775 aa9.05□□□□□ -0.96
SF3B3-210ENST00000567654 ST18O60284 1047 aa9.04□□□□□ -0.96
SF3B3-210ENST00000567654 RANGAP1P46060 587 aaPredicted RBP9.04□□□□□ -0.96
SF3B3-210ENST00000567654 PPARGC1BQ86YN6 1023 aaKnown RBP9.04□□□□□ -0.96
SF3B3-210ENST00000567654 DDX12PQ92771 950 aa9.04□□□□□ -0.96
SF3B3-210ENST00000567654 LRRIQ1Q96JM4 1722 aa9.03□□□□□ -0.96
SF3B3-210ENST00000567654 GRXCR2A6NFK2 248 aa9.03□□□□□ -0.96
SF3B3-210ENST00000567654 POTEGQ6S5H5 508 aa9.03□□□□□ -0.96
SF3B3-210ENST00000567654 VPS8Q8N3P4 1428 aa9.03□□□□□ -0.96
SF3B3-210ENST00000567654 KDM4FA0A1W2PPD8 638 aa9.02□□□□□ -0.97
SF3B3-210ENST00000567654 SPDYE16A6NNV3 312 aaPredicted RBP9.02□□□□□ -0.97
SF3B3-210ENST00000567654 MARVELD3Q96A59 401 aa9.02□□□□□ -0.97
SF3B3-210ENST00000567654 PCGF6Q9BYE7 350 aa9.02□□□□□ -0.97
SF3B3-210ENST00000567654 SAMD9Q5K651 1589 aa9.02□□□□□ -0.97
SF3B3-210ENST00000567654 GRIN2BQ13224 1484 aa9.02□□□□□ -0.97
SF3B3-210ENST00000567654 SNAPC4Q5SXM2 1469 aa9.02□□□□□ -0.97
SF3B3-210ENST00000567654 TESPA1A2RU30 521 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-210ENST00000567654 LCE2DQ5TA82 110 aaPredicted RBP9.01□□□□□ -0.97
SF3B3-210ENST00000567654 HOXB1P14653 301 aaPredicted RBP9□□□□□ -0.97
SF3B3-210ENST00000567654 ZSWIM6Q9HCJ5 1215 aa9□□□□□ -0.97
SF3B3-210ENST00000567654 LHX6Q9UPM6 363 aa9□□□□□ -0.97
SF3B3-210ENST00000567654 CHD1O14646 1710 aa9□□□□□ -0.97
SF3B3-210ENST00000567654 PCF11O94913 1555 aaKnown RBP8.99□□□□□ -0.97
SF3B3-210ENST00000567654 ANO8Q9HCE9 1232 aaPredicted RBP8.99□□□□□ -0.97
SF3B3-210ENST00000567654 FHAD1B1AJZ9 1412 aa8.98□□□□□ -0.97
SF3B3-210ENST00000567654 CFAP43Q8NDM7 1665 aa8.98□□□□□ -0.97
SF3B3-210ENST00000567654 EFCAB5A4FU69 1503 aa8.98□□□□□ -0.97
SF3B3-210ENST00000567654 ZNF316A6NFI3 1004 aaPredicted RBP8.97□□□□□ -0.97
SF3B3-210ENST00000567654 PRIM1P49642 420 aaKnown RBP8.97□□□□□ -0.97
SF3B3-210ENST00000567654 CEP170Q5SW79 1584 aa8.97□□□□□ -0.97
SF3B3-210ENST00000567654 IQGAP2Q13576 1575 aa8.96□□□□□ -0.97
SF3B3-210ENST00000567654 TRIM26Q12899 539 aaPredicted RBP8.96□□□□□ -0.98
SF3B3-210ENST00000567654 RBM26Q5T8P6 1007 aaKnown RBP8.95□□□□□ -0.98
SF3B3-210ENST00000567654 ZNF454Q8N9F8 522 aa8.95□□□□□ -0.98
SF3B3-210ENST00000567654 RBM33Q96EV2 1170 aaKnown RBP8.95□□□□□ -0.98
SF3B3-210ENST00000567654 PCDHGA10Q9Y5H3 936 aa8.95□□□□□ -0.98
SF3B3-210ENST00000567654 TTBK1Q5TCY1 1321 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-210ENST00000567654 FHOD3Q2V2M9 1422 aa8.95□□□□□ -0.98
SF3B3-210ENST00000567654 GRIN2AQ12879 1464 aa8.95□□□□□ -0.98
SF3B3-210ENST00000567654 MAGI1Q96QZ7 1491 aaPredicted RBP8.95□□□□□ -0.98
SF3B3-210ENST00000567654 PTGER2P43116 358 aa8.94□□□□□ -0.98
SF3B3-210ENST00000567654 EMP3P54852 163 aa8.94□□□□□ -0.98
SF3B3-210ENST00000567654 OSBPP22059 807 aa8.93□□□□□ -0.98
SF3B3-210ENST00000567654 TIAM1Q13009 1591 aa8.93□□□□□ -0.98
SF3B3-210ENST00000567654 SYNJ2O15056 1496 aa8.92□□□□□ -0.98
SF3B3-210ENST00000567654 FAM205CA6NFA0 338 aa8.92□□□□□ -0.98
SF3B3-210ENST00000567654 FOSBP53539 338 aa8.92□□□□□ -0.98
SF3B3-210ENST00000567654 LMOD2Q6P5Q4 547 aa8.92□□□□□ -0.98
SF3B3-210ENST00000567654 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.92□□□□□ -0.98
SF3B3-210ENST00000567654 ERBB3P21860 1342 aa8.91□□□□□ -0.98
SF3B3-210ENST00000567654 POTEB3A0JP26 581 aa8.91□□□□□ -0.98
SF3B3-210ENST00000567654 VARS2Q5ST30 1063 aaKnown RBP8.91□□□□□ -0.98
SF3B3-210ENST00000567654 POTEBQ6S5H4 581 aa8.91□□□□□ -0.98
SF3B3-210ENST00000567654 KIAA0556O60303 1618 aa8.91□□□□□ -0.98
SF3B3-210ENST00000567654 UGGT2Q9NYU1 1516 aa8.9□□□□□ -0.98
SF3B3-210ENST00000567654 PHF14O94880 888 aa8.9□□□□□ -0.98
SF3B3-210ENST00000567654 JPH4Q96JJ6 628 aa8.9□□□□□ -0.98
SF3B3-210ENST00000567654 TSR1Q2NL82 804 aaKnown RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms