RNA–Protein interactions for RNA: ENST00000562534.5

USB1-206, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 562 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-206ENST00000562534 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.56■■□□□ 1.52
USB1-206ENST00000562534 HFM1A2PYH4 1435 aa24.53■■□□□ 1.52
USB1-206ENST00000562534 NAIPQ13075 1403 aa24.53■■□□□ 1.52
USB1-206ENST00000562534 KANK1Q14678 1352 aa24.53■■□□□ 1.52
USB1-206ENST00000562534 MADDQ8WXG6 1647 aa24.52■■□□□ 1.52
USB1-206ENST00000562534 ZMYM3Q14202 1370 aa24.51■■□□□ 1.51
USB1-206ENST00000562534 PTPRMP28827 1452 aa24.51■■□□□ 1.51
USB1-206ENST00000562534 TRIM26Q12899 539 aaPredicted RBP24.5■■□□□ 1.51
USB1-206ENST00000562534 ACIN1Q9UKV3 1341 aaKnown RBP24.49■■□□□ 1.51
USB1-206ENST00000562534 RNF17Q9BXT8 1623 aaKnown RBP24.49■■□□□ 1.51
USB1-206ENST00000562534 FER1L4A9Z1Z3 1794 aa24.49■■□□□ 1.51
USB1-206ENST00000562534 FAM135AQ9P2D6 1515 aa24.48■■□□□ 1.51
USB1-206ENST00000562534 CEBPAP49715 358 aaPredicted RBP24.47■■□□□ 1.51
USB1-206ENST00000562534 PLPPR3Q6T4P5 718 aa24.46■■□□□ 1.51
USB1-206ENST00000562534 RIMS1Q86UR5 1692 aaKnown RBP24.46■■□□□ 1.51
USB1-206ENST00000562534 KDM5DQ9BY66 1539 aa24.44■■□□□ 1.5
USB1-206ENST00000562534 SETD5Q9C0A6 1442 aa24.43■■□□□ 1.5
USB1-206ENST00000562534 NUP155O75694 1391 aa24.42■■□□□ 1.5
USB1-206ENST00000562534 DEPDC5O75140 1603 aa24.42■■□□□ 1.5
USB1-206ENST00000562534 PRDM15P57071 1507 aaPredicted RBP24.41■■□□□ 1.5
USB1-206ENST00000562534 MROH1Q8NDA8 1641 aa24.41■■□□□ 1.5
USB1-206ENST00000562534 CLTCQ00610 1675 aaKnown RBP24.4■■□□□ 1.5
USB1-206ENST00000562534 TRIM52Q96A61 297 aa24.4■■□□□ 1.5
USB1-206ENST00000562534 GCC2Q8IWJ2 1684 aa24.4■■□□□ 1.5
USB1-206ENST00000562534 HRCP23327 699 aa24.39■■□□□ 1.49
USB1-206ENST00000562534 MROH2AA6NES4 1674 aa24.39■■□□□ 1.49
USB1-206ENST00000562534 ABCC3O15438 1527 aa24.39■■□□□ 1.49
USB1-206ENST00000562534 VWDEQ8N2E2 1590 aa24.36■■□□□ 1.49
USB1-206ENST00000562534 ZC3H13Q5T200 1668 aaKnown RBP24.36■■□□□ 1.49
USB1-206ENST00000562534 UNC13BO14795 1591 aa24.35■■□□□ 1.49
USB1-206ENST00000562534 LMTK2Q8IWU2 1503 aa24.35■■□□□ 1.49
USB1-206ENST00000562534 ARHGAP31Q2M1Z3 1444 aa24.35■■□□□ 1.49
USB1-206ENST00000562534 FBXO31Q5XUX0 539 aaPredicted RBP24.34■■□□□ 1.49
USB1-206ENST00000562534 NPATQ14207 1427 aa24.34■■□□□ 1.49
USB1-206ENST00000562534 C3P01024 1663 aa24.33■■□□□ 1.49
USB1-206ENST00000562534 PZPP20742 1482 aa24.32■■□□□ 1.48
USB1-206ENST00000562534 RAB3GAP2Q9H2M9 1393 aa24.31■■□□□ 1.48
USB1-206ENST00000562534 SETD1BQ9UPS6 1966 aaKnown RBP24.31■■□□□ 1.48
USB1-206ENST00000562534 CEP152O94986 1710 aa24.29■■□□□ 1.48
USB1-206ENST00000562534 SLC4A1APQ9BWU0 796 aaKnown RBP24.28■■□□□ 1.48
USB1-206ENST00000562534 CAMSAP1Q5T5Y3 1602 aa24.27■■□□□ 1.48
USB1-206ENST00000562534 IQGAP3Q86VI3 1631 aa24.27■■□□□ 1.48
USB1-206ENST00000562534 RPRD2Q5VT52 1461 aaKnown RBP24.25■■□□□ 1.47
USB1-206ENST00000562534 MPHOSPH9Q99550 1183 aa24.24■■□□□ 1.47
USB1-206ENST00000562534 TNRQ92752 1358 aa24.24■■□□□ 1.47
USB1-206ENST00000562534 TET3O43151 1660 aa24.23■■□□□ 1.47
USB1-206ENST00000562534 EFCAB6Q5THR3 1501 aa24.22■■□□□ 1.47
USB1-206ENST00000562534 PKD2Q13563 968 aa24.22■■□□□ 1.47
USB1-206ENST00000562534 ERVK-7P63135 1459 aa24.2■■□□□ 1.47
USB1-206ENST00000562534 UHRF1BP1Q6BDS2 1440 aa24.2■■□□□ 1.46
USB1-206ENST00000562534 SLC52A1Q9NWF4 448 aa24.19■■□□□ 1.46
USB1-206ENST00000562534 SPATA31D1Q6ZQQ2 1576 aa24.18■■□□□ 1.46
USB1-206ENST00000562534 CFAP65Q6ZU64 1925 aaKnown RBP24.18■■□□□ 1.46
USB1-206ENST00000562534 NOS1P29475 1434 aa24.17■■□□□ 1.46
USB1-206ENST00000562534 PCGF6Q9BYE7 350 aa24.15■■□□□ 1.46
USB1-206ENST00000562534 NLRP1Q9C000 1473 aa24.14■■□□□ 1.46
USB1-206ENST00000562534 IDI1Q13907 227 aa24.14■■□□□ 1.45
USB1-206ENST00000562534 PREX1Q8TCU6 1659 aa24.14■■□□□ 1.45
USB1-206ENST00000562534 THEMISQ8N1K5 641 aaPredicted RBP24.13■■□□□ 1.45
USB1-206ENST00000562534 E9PCH4 1651 aa24.13■■□□□ 1.45
USB1-206ENST00000562534 LMTK3Q96Q04 1460 aa24.11■■□□□ 1.45
USB1-206ENST00000562534 STAG3Q9UJ98 1225 aa24.1■■□□□ 1.45
USB1-206ENST00000562534 A2ML1A8K2U0 1454 aa24.1■■□□□ 1.45
USB1-206ENST00000562534 PTPRTO14522 1441 aa24.1■■□□□ 1.45
USB1-206ENST00000562534 FOXD1Q16676 465 aa24.09■■□□□ 1.45
USB1-206ENST00000562534 HSPA2P54652 639 aa24.08■■□□□ 1.45
USB1-206ENST00000562534 MYO3AQ8NEV4 1616 aa24.06■■□□□ 1.44
USB1-206ENST00000562534 CEP170BQ9Y4F5 1589 aaPredicted RBP24.04■■□□□ 1.44
USB1-206ENST00000562534 SYNMO15061 1565 aa24.03■■□□□ 1.44
USB1-206ENST00000562534 UGGT1Q9NYU2 1555 aa24.03■■□□□ 1.44
USB1-206ENST00000562534 CHGAP10645 457 aaKnown RBP24.01■■□□□ 1.43
USB1-206ENST00000562534 PLA2R1Q13018 1463 aa24■■□□□ 1.43
USB1-206ENST00000562534 ZNF142P52746 1687 aaPredicted RBP23.99■■□□□ 1.43
USB1-206ENST00000562534 HDGFP51858 240 aaKnown RBP23.99■■□□□ 1.43
USB1-206ENST00000562534 ANKLE2Q86XL3 938 aa23.99■■□□□ 1.43
USB1-206ENST00000562534 SPHKAPQ2M3C7 1700 aa23.98■■□□□ 1.43
USB1-206ENST00000562534 DMRT2Q9Y5R5 561 aa23.97■■□□□ 1.43
USB1-206ENST00000562534 TRPM2O94759 1503 aa23.96■■□□□ 1.43
USB1-206ENST00000562534 EID1Q9Y6B2 187 aa23.96■■□□□ 1.43
USB1-206ENST00000562534 PIK3C2BO00750 1634 aa23.95■■□□□ 1.42
USB1-206ENST00000562534 CCDC144AA2RUR9 1427 aa23.94■■□□□ 1.42
USB1-206ENST00000562534 ANKRD30BQ9BXX2 1392 aa23.94■■□□□ 1.42
USB1-206ENST00000562534 TXNDC2Q86VQ3 553 aa23.93■■□□□ 1.42
USB1-206ENST00000562534 KDM5AP29375 1690 aaKnown RBP23.92■■□□□ 1.42
USB1-206ENST00000562534 TMEM2Q9UHN6 1383 aa23.92■■□□□ 1.42
USB1-206ENST00000562534 NCKAP5LQ9HCH0 1330 aa23.92■■□□□ 1.42
USB1-206ENST00000562534 UBR1Q8IWV7 1749 aa23.92■■□□□ 1.42
USB1-206ENST00000562534 ZNF326Q5BKZ1 582 aaKnown RBP23.9■■□□□ 1.42
USB1-206ENST00000562534 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.9■■□□□ 1.42
USB1-206ENST00000562534 ADGRB3O60242 1522 aa23.89■■□□□ 1.42
USB1-206ENST00000562534 TMEM131LA2VDJ0 1609 aa23.88■■□□□ 1.41
USB1-206ENST00000562534 DHX57Q6P158 1386 aaKnown RBP23.88■■□□□ 1.41
USB1-206ENST00000562534 LTKP29376 864 aa23.87■■□□□ 1.41
USB1-206ENST00000562534 SLIT1O75093 1534 aa23.87■■□□□ 1.41
USB1-206ENST00000562534 CLTCL1P53675 1640 aa23.87■■□□□ 1.41
USB1-206ENST00000562534 ARHGAP23Q9P227 1491 aa23.87■■□□□ 1.41
USB1-206ENST00000562534 RPGRIP1LQ68CZ1 1315 aa23.86■■□□□ 1.41
USB1-206ENST00000562534 RGL3Q3MIN7 710 aa23.84■■□□□ 1.41
USB1-206ENST00000562534 PPP1R15AO75807 674 aaPredicted RBP23.83■■□□□ 1.41
USB1-206ENST00000562534 RIMS2Q9UQ26 1411 aa23.83■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms