RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CCDC141Q6ZP82 1450 aa17.43■□□□□ 0.38
LDLR-207ENST00000558013 CDC42BPBQ9Y5S2 1711 aa17.42■□□□□ 0.38
LDLR-207ENST00000558013 PLA2R1Q13018 1463 aa17.42■□□□□ 0.38
LDLR-207ENST00000558013 KDM5DQ9BY66 1539 aa17.41■□□□□ 0.38
LDLR-207ENST00000558013 ARHGEF12Q9NZN5 1544 aa17.41■□□□□ 0.38
LDLR-207ENST00000558013 FANCIQ9NVI1 1328 aa17.41■□□□□ 0.38
LDLR-207ENST00000558013 SYCP2Q9BX26 1530 aa17.41■□□□□ 0.38
LDLR-207ENST00000558013 CCDC144AA2RUR9 1427 aa17.41■□□□□ 0.38
LDLR-207ENST00000558013 CC2D1BQ5T0F9 858 aaKnown RBP17.39■□□□□ 0.37
LDLR-207ENST00000558013 MYBBP1AQ9BQG0 1328 aaKnown RBP17.39■□□□□ 0.37
LDLR-207ENST00000558013 PLEKHH2Q8IVE3 1493 aa17.38■□□□□ 0.37
LDLR-207ENST00000558013 ARHGEF5Q12774 1597 aa17.38■□□□□ 0.37
LDLR-207ENST00000558013 PRAG1Q86YV5 1406 aa17.38■□□□□ 0.37
LDLR-207ENST00000558013 ERCC6L2Q5T890 1561 aa17.38■□□□□ 0.37
LDLR-207ENST00000558013 CCDC136Q96JN2 1154 aa17.38■□□□□ 0.37
LDLR-207ENST00000558013 ARHGAP5Q13017 1502 aa17.38■□□□□ 0.37
LDLR-207ENST00000558013 TTC37Q6PGP7 1564 aa17.37■□□□□ 0.37
LDLR-207ENST00000558013 RNF123Q5XPI4 1314 aa17.36■□□□□ 0.37
LDLR-207ENST00000558013 PER1O15534 1290 aaPredicted RBP17.36■□□□□ 0.37
LDLR-207ENST00000558013 LRPPRCP42704 1394 aaKnown RBP17.35■□□□□ 0.37
LDLR-207ENST00000558013 DISP3Q9P2K9 1392 aa17.35■□□□□ 0.37
LDLR-207ENST00000558013 RALBP1Q15311 655 aa17.35■□□□□ 0.37
LDLR-207ENST00000558013 A2MP01023 1474 aa17.34■□□□□ 0.37
LDLR-207ENST00000558013 PREX2Q70Z35 1606 aa17.34■□□□□ 0.37
LDLR-207ENST00000558013 TESK2Q96S53 571 aa17.34■□□□□ 0.37
LDLR-207ENST00000558013 RSPH4AQ5TD94 716 aa17.34■□□□□ 0.37
LDLR-207ENST00000558013 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.34■□□□□ 0.372e-11■□□□□ 9.3
LDLR-207ENST00000558013 CDCA7LQ96GN5 454 aa17.34■□□□□ 0.37
LDLR-207ENST00000558013 BRD4O60885 1362 aaPredicted RBP17.33■□□□□ 0.36
LDLR-207ENST00000558013 PANK3Q9H999 370 aa17.32■□□□□ 0.36
LDLR-207ENST00000558013 ERICH6Q7L0X2 663 aa17.3■□□□□ 0.36
LDLR-207ENST00000558013 NLRP13Q86W25 1043 aa17.3■□□□□ 0.36
LDLR-207ENST00000558013 KTN1Q86UP2 1357 aaKnown RBP17.3■□□□□ 0.36
LDLR-207ENST00000558013 TRPM1Q7Z4N2 1603 aa17.29■□□□□ 0.36
LDLR-207ENST00000558013 EXOC6Q8TAG9 804 aa17.29■□□□□ 0.36
LDLR-207ENST00000558013 PARD3Q8TEW0 1356 aa17.29■□□□□ 0.36
LDLR-207ENST00000558013 CHD1O14646 1710 aa17.29■□□□□ 0.36
LDLR-207ENST00000558013 AFAP1Q8N556 730 aa17.28■□□□□ 0.36
LDLR-207ENST00000558013 PLIN1O60240 522 aa17.26■□□□□ 0.35
LDLR-207ENST00000558013 RRP1P56182 461 aaKnown RBP17.26■□□□□ 0.35
LDLR-207ENST00000558013 E9PCH4 1651 aa17.26■□□□□ 0.35
LDLR-207ENST00000558013 PAK3O75914 559 aaPredicted RBP17.25■□□□□ 0.35
LDLR-207ENST00000558013 RCAN3Q9UKA8 241 aa17.25■□□□□ 0.35
LDLR-207ENST00000558013 GPRASP1Q5JY77 1395 aa17.25■□□□□ 0.35
LDLR-207ENST00000558013 TRAPPC8Q9Y2L5 1435 aa17.25■□□□□ 0.35
LDLR-207ENST00000558013 ERBINQ96RT1 1412 aa17.23■□□□□ 0.35
LDLR-207ENST00000558013 COL17A1Q9UMD9 1497 aaPredicted RBP17.22■□□□□ 0.35
LDLR-207ENST00000558013 UNC13BO14795 1591 aa17.22■□□□□ 0.35
LDLR-207ENST00000558013 EFCAB2Q5VUJ9 269 aa17.22■□□□□ 0.35
LDLR-207ENST00000558013 TMF1P82094 1093 aa17.21■□□□□ 0.35
LDLR-207ENST00000558013 SKAP1Q86WV1 359 aa17.21■□□□□ 0.35
LDLR-207ENST00000558013 ABCC2Q92887 1545 aa17.21■□□□□ 0.35
LDLR-207ENST00000558013 PRDM15P57071 1507 aaPredicted RBP17.19■□□□□ 0.34
LDLR-207ENST00000558013 MAST1Q9Y2H9 1570 aa17.19■□□□□ 0.34
LDLR-207ENST00000558013 PLCH2O75038 1416 aa17.19■□□□□ 0.34
LDLR-207ENST00000558013 ADAMTS8Q9UP79 889 aa17.19■□□□□ 0.34
LDLR-207ENST00000558013 IQGAP3Q86VI3 1631 aa17.18■□□□□ 0.34
LDLR-207ENST00000558013 MYO5CQ9NQX4 1742 aa17.18■□□□□ 0.34
LDLR-207ENST00000558013 DUOX2Q9NRD8 1548 aa17.17■□□□□ 0.34
LDLR-207ENST00000558013 SPAG9O60271 1321 aaKnown RBP17.17■□□□□ 0.34
LDLR-207ENST00000558013 SHROOM2Q13796 1616 aa17.17■□□□□ 0.34
LDLR-207ENST00000558013 PLXNC1O60486 1568 aa17.16■□□□□ 0.34
LDLR-207ENST00000558013 NBR1Q14596 966 aa17.15■□□□□ 0.34
LDLR-207ENST00000558013 MYT1LQ9UL68 1186 aa17.15■□□□□ 0.34
LDLR-207ENST00000558013 NOP58Q9Y2X3 529 aaKnown RBP17.15■□□□□ 0.34
LDLR-207ENST00000558013 MAGI2Q86UL8 1455 aa17.15■□□□□ 0.34
LDLR-207ENST00000558013 C20orf194Q5TEA3 1177 aa17.13■□□□□ 0.33
LDLR-207ENST00000558013 NPM2Q86SE8 214 aaKnown RBP17.12■□□□□ 0.33
LDLR-207ENST00000558013 ATP10AO60312 1499 aa17.12■□□□□ 0.33
LDLR-207ENST00000558013 KNSTRNQ9Y448 316 aa17.12■□□□□ 0.33
LDLR-207ENST00000558013 PDE3BQ13370 1112 aa17.12■□□□□ 0.33
LDLR-207ENST00000558013 PPP2R1AP30153 589 aa17.11■□□□□ 0.33
LDLR-207ENST00000558013 ZCCHC11Q5TAX3 1644 aaKnown RBP17.11■□□□□ 0.33
LDLR-207ENST00000558013 WASHC2CQ9Y4E1 1318 aa17.11■□□□□ 0.33
LDLR-207ENST00000558013 WDR7Q9Y4E6 1490 aa17.11■□□□□ 0.33
LDLR-207ENST00000558013 KIF3BO15066 747 aa17.1■□□□□ 0.33
LDLR-207ENST00000558013 CRBNQ96SW2 442 aa17.1■□□□□ 0.33
LDLR-207ENST00000558013 BCL11AQ9H165 835 aa17.1■□□□□ 0.33
LDLR-207ENST00000558013 AMER1Q5JTC6 1135 aaPredicted RBP17.1■□□□□ 0.33
LDLR-207ENST00000558013 ABCC1P33527 1531 aa17.09■□□□□ 0.33
LDLR-207ENST00000558013 BLMP54132 1417 aaPredicted RBP17.08■□□□□ 0.32
LDLR-207ENST00000558013 CFAP70Q5T0N1 1121 aa17.08■□□□□ 0.32
LDLR-207ENST00000558013 ANP32AP39687 249 aaKnown RBP17.07■□□□□ 0.32
LDLR-207ENST00000558013 CCDC146Q8IYE0 955 aa17.07■□□□□ 0.32
LDLR-207ENST00000558013 PLEKHH1Q9ULM0 1364 aa17.07■□□□□ 0.32
LDLR-207ENST00000558013 IPO9Q96P70 1041 aaKnown RBP17.07■□□□□ 0.32
LDLR-207ENST00000558013 EIF2AK4Q9P2K8 1649 aaKnown RBP17.06■□□□□ 0.32
LDLR-207ENST00000558013 LAMC1P11047 1609 aa17.06■□□□□ 0.32
LDLR-207ENST00000558013 WDR43Q15061 677 aaKnown RBP eCLIP17.05■□□□□ 0.32
LDLR-207ENST00000558013 SCAPERQ9BY12 1400 aa17.04■□□□□ 0.32
LDLR-207ENST00000558013 MADDQ8WXG6 1647 aa17.04■□□□□ 0.32
LDLR-207ENST00000558013 ADGRF5Q8IZF2 1346 aa17.04■□□□□ 0.32
LDLR-207ENST00000558013 PDE4AP27815 886 aa17.04■□□□□ 0.32
LDLR-207ENST00000558013 UGGT1Q9NYU2 1555 aa17.04■□□□□ 0.32
LDLR-207ENST00000558013 RNF17Q9BXT8 1623 aaKnown RBP17.02■□□□□ 0.32
LDLR-207ENST00000558013 CLTCL1P53675 1640 aa17.02■□□□□ 0.32
LDLR-207ENST00000558013 ZFYVE16Q7Z3T8 1539 aa17.02■□□□□ 0.31
LDLR-207ENST00000558013 DUSP27Q5VZP5 1158 aa17.02■□□□□ 0.31
LDLR-207ENST00000558013 SPINK5Q9NQ38 1064 aaPredicted RBP17.02■□□□□ 0.31
LDLR-207ENST00000558013 ZBTB47Q9UFB7 747 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms