RNA–Protein interactions for RNA: ENST00000556142.5

HNRNPC-223, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), human

TSL 5 BASIC

Gene HNRNPC, Length 1,599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HNRNPC-223	ENST00000556142	RIMS1	Q86UR5	1692 aa	Known RBP	13.75	□□□□□ -0.21
HNRNPC-223	ENST00000556142	KDM5D	Q9BY66	1539 aa		13.75	□□□□□ -0.21
HNRNPC-223	ENST00000556142	ANKRD30B	Q9BXX2	1392 aa		13.75	□□□□□ -0.21
HNRNPC-223	ENST00000556142	PLXNC1	O60486	1568 aa		13.75	□□□□□ -0.21
HNRNPC-223	ENST00000556142	FRMPD1	Q5SYB0	1578 aa		13.75	□□□□□ -0.21
HNRNPC-223	ENST00000556142	PPP1R15A	O75807	674 aa	Predicted RBP	13.75	□□□□□ -0.21
HNRNPC-223	ENST00000556142	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.74	□□□□□ -0.21
HNRNPC-223	ENST00000556142	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.73	□□□□□ -0.21
HNRNPC-223	ENST00000556142	DISP3	Q9P2K9	1392 aa		13.71	□□□□□ -0.21
HNRNPC-223	ENST00000556142	SOCS7	O14512	581 aa		13.71	□□□□□ -0.21
HNRNPC-223	ENST00000556142	AFAP1	Q8N556	730 aa		13.71	□□□□□ -0.21
HNRNPC-223	ENST00000556142	ARHGEF40	Q8TER5	1519 aa		13.71	□□□□□ -0.21
HNRNPC-223	ENST00000556142	ILDR2	Q71H61	639 aa		13.71	□□□□□ -0.22
HNRNPC-223	ENST00000556142	SCAPER	Q9BY12	1400 aa		13.7	□□□□□ -0.22
HNRNPC-223	ENST00000556142	DUOX2	Q9NRD8	1548 aa		13.7	□□□□□ -0.22
HNRNPC-223	ENST00000556142	NUP155	O75694	1391 aa		13.69	□□□□□ -0.22
HNRNPC-223	ENST00000556142	POGZ	Q7Z3K3	1410 aa		13.69	□□□□□ -0.22
HNRNPC-223	ENST00000556142	ZFYVE16	Q7Z3T8	1539 aa		13.69	□□□□□ -0.22
HNRNPC-223	ENST00000556142	TONSL	Q96HA7	1378 aa		13.68	□□□□□ -0.22
HNRNPC-223	ENST00000556142	ERBIN	Q96RT1	1412 aa		13.68	□□□□□ -0.22
HNRNPC-223	ENST00000556142	SPAG9	O60271	1321 aa	Known RBP	13.68	□□□□□ -0.22
HNRNPC-223	ENST00000556142	RPRD2	Q5VT52	1461 aa	Known RBP	13.67	□□□□□ -0.22
HNRNPC-223	ENST00000556142	PKD2	Q13563	968 aa		13.67	□□□□□ -0.22
HNRNPC-223	ENST00000556142	UNC13B	O14795	1591 aa		13.67	□□□□□ -0.22
HNRNPC-223	ENST00000556142	INO80	Q9ULG1	1556 aa	Predicted RBP	13.66	□□□□□ -0.22
HNRNPC-223	ENST00000556142	MAGI2	Q86UL8	1455 aa		13.66	□□□□□ -0.22
HNRNPC-223	ENST00000556142	RICTOR	Q6R327	1708 aa		13.65	□□□□□ -0.22
HNRNPC-223	ENST00000556142	CFAP74	Q9C0B2	1584 aa		13.64	□□□□□ -0.23
HNRNPC-223	ENST00000556142	ATP7A	Q04656	1500 aa		13.64	□□□□□ -0.23
HNRNPC-223	ENST00000556142	FAM135A	Q9P2D6	1515 aa		13.64	□□□□□ -0.23
HNRNPC-223	ENST00000556142	DIEXF	Q68CQ4	756 aa	Known RBP	13.63	□□□□□ -0.23
HNRNPC-223	ENST00000556142	MLEC	Q14165	292 aa		13.62	□□□□□ -0.23
HNRNPC-223	ENST00000556142	ZMYM4	Q5VZL5	1548 aa		13.62	□□□□□ -0.23
HNRNPC-223	ENST00000556142	ZNF518A	Q6AHZ1	1483 aa		13.62	□□□□□ -0.23
HNRNPC-223	ENST00000556142	L3MBTL2	Q969R5	705 aa		13.62	□□□□□ -0.23
HNRNPC-223	ENST00000556142	IQGAP3	Q86VI3	1631 aa		13.61	□□□□□ -0.23
HNRNPC-223	ENST00000556142	KDM5C	P41229	1560 aa		13.61	□□□□□ -0.23
HNRNPC-223	ENST00000556142	YEATS2	Q9ULM3	1422 aa		13.61	□□□□□ -0.23
HNRNPC-223	ENST00000556142	DHX29	Q7Z478	1369 aa	Known RBP	13.61	□□□□□ -0.23
HNRNPC-223	ENST00000556142	SIGLEC1	Q9BZZ2	1709 aa		13.61	□□□□□ -0.23
HNRNPC-223	ENST00000556142	MLH3	Q9UHC1	1453 aa		13.6	□□□□□ -0.23
HNRNPC-223	ENST00000556142	FER1L4	A9Z1Z3	1794 aa		13.6	□□□□□ -0.23
HNRNPC-223	ENST00000556142	KIDINS220	Q9ULH0	1771 aa		13.6	□□□□□ -0.23
HNRNPC-223	ENST00000556142	SPATA31D1	Q6ZQQ2	1576 aa		13.59	□□□□□ -0.23
HNRNPC-223	ENST00000556142	PLA2R1	Q13018	1463 aa		13.58	□□□□□ -0.24
HNRNPC-223	ENST00000556142	PREX1	Q8TCU6	1659 aa		13.57	□□□□□ -0.24
HNRNPC-223	ENST00000556142	DEPDC5	O75140	1603 aa		13.57	□□□□□ -0.24
HNRNPC-223	ENST00000556142	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.56	□□□□□ -0.24	2e-26	■■□□□ 11.8
HNRNPC-223	ENST00000556142	VWDE	Q8N2E2	1590 aa		13.56	□□□□□ -0.24
HNRNPC-223	ENST00000556142	ATP10A	O60312	1499 aa		13.55	□□□□□ -0.24
HNRNPC-223	ENST00000556142	NBPF8	Q3BBV2	869 aa		13.55	□□□□□ -0.24
HNRNPC-223	ENST00000556142	PPP4R3CP	Q6ZMV5	832 aa		13.55	□□□□□ -0.24
HNRNPC-223	ENST00000556142	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.55	□□□□□ -0.24
HNRNPC-223	ENST00000556142	CEBPA	P49715	358 aa	Predicted RBP	13.54	□□□□□ -0.24
HNRNPC-223	ENST00000556142	A2M	P01023	1474 aa		13.53	□□□□□ -0.24
HNRNPC-223	ENST00000556142	MROH1	Q8NDA8	1641 aa		13.53	□□□□□ -0.24
HNRNPC-223	ENST00000556142	STRC	Q7RTU9	1775 aa		13.53	□□□□□ -0.24
HNRNPC-223	ENST00000556142	UHRF1BP1	Q6BDS2	1440 aa		13.52	□□□□□ -0.25
HNRNPC-223	ENST00000556142	KIF3B	O15066	747 aa		13.51	□□□□□ -0.25
HNRNPC-223	ENST00000556142	PRDM15	P57071	1507 aa	Predicted RBP	13.51	□□□□□ -0.25
HNRNPC-223	ENST00000556142	MYT1L	Q9UL68	1186 aa		13.5	□□□□□ -0.25
HNRNPC-223	ENST00000556142	ABCA6	Q8N139	1617 aa		13.5	□□□□□ -0.25
HNRNPC-223	ENST00000556142	PTPRT	O14522	1441 aa		13.49	□□□□□ -0.25
HNRNPC-223	ENST00000556142	LMTK2	Q8IWU2	1503 aa		13.48	□□□□□ -0.25
HNRNPC-223	ENST00000556142	RNF17	Q9BXT8	1623 aa	Known RBP	13.48	□□□□□ -0.25
HNRNPC-223	ENST00000556142		E9PCH4	1651 aa		13.48	□□□□□ -0.25
HNRNPC-223	ENST00000556142	DIP2C	Q9Y2E4	1556 aa		13.47	□□□□□ -0.25
HNRNPC-223	ENST00000556142	CCDC144A	A2RUR9	1427 aa		13.47	□□□□□ -0.25
HNRNPC-223	ENST00000556142	TET3	O43151	1660 aa		13.47	□□□□□ -0.25
HNRNPC-223	ENST00000556142	KANK1	Q14678	1352 aa		13.47	□□□□□ -0.25
HNRNPC-223	ENST00000556142	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.45	□□□□□ -0.26
HNRNPC-223	ENST00000556142	HSPA5	P11021	654 aa	Known RBP	13.45	□□□□□ -0.26
HNRNPC-223	ENST00000556142	MIER1	Q8N108	512 aa		13.45	□□□□□ -0.26
HNRNPC-223	ENST00000556142	IQSEC2	Q5JU85	1478 aa		13.44	□□□□□ -0.26
HNRNPC-223	ENST00000556142	LTBP4	Q8N2S1	1624 aa		13.44	□□□□□ -0.26
HNRNPC-223	ENST00000556142	SPATA31E1	Q6ZUB1	1445 aa		13.44	□□□□□ -0.26
HNRNPC-223	ENST00000556142	TRPM2	O94759	1503 aa		13.43	□□□□□ -0.26
HNRNPC-223	ENST00000556142	SETD1B	Q9UPS6	1966 aa	Known RBP	13.43	□□□□□ -0.26
HNRNPC-223	ENST00000556142	EFCAB6	Q5THR3	1501 aa		13.41	□□□□□ -0.26
HNRNPC-223	ENST00000556142	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.41	□□□□□ -0.26
HNRNPC-223	ENST00000556142	RALGAPB	Q86X10	1494 aa		13.41	□□□□□ -0.26
HNRNPC-223	ENST00000556142	ESF1	Q9H501	851 aa	Known RBP	13.41	□□□□□ -0.26
HNRNPC-223	ENST00000556142	DCAF11	Q8TEB1	546 aa		13.4	□□□□□ -0.26
HNRNPC-223	ENST00000556142	SPHKAP	Q2M3C7	1700 aa		13.4	□□□□□ -0.26
HNRNPC-223	ENST00000556142	C3	P01024	1663 aa		13.4	□□□□□ -0.26
HNRNPC-223	ENST00000556142	PRAG1	Q86YV5	1406 aa		13.39	□□□□□ -0.27
HNRNPC-223	ENST00000556142	CLTCL1	P53675	1640 aa		13.38	□□□□□ -0.27
HNRNPC-223	ENST00000556142	NEURL4	Q96JN8	1562 aa		13.38	□□□□□ -0.27
HNRNPC-223	ENST00000556142	RERE	Q9P2R6	1566 aa		13.38	□□□□□ -0.27
HNRNPC-223	ENST00000556142	GGT6	Q6P531	493 aa		13.38	□□□□□ -0.27
HNRNPC-223	ENST00000556142	ABCC3	O15438	1527 aa		13.38	□□□□□ -0.27
HNRNPC-223	ENST00000556142	RGL3	Q3MIN7	710 aa		13.37	□□□□□ -0.27
HNRNPC-223	ENST00000556142	KDM2A	Q9Y2K7	1162 aa		13.37	□□□□□ -0.27
HNRNPC-223	ENST00000556142	CEP152	O94986	1710 aa		13.37	□□□□□ -0.27
HNRNPC-223	ENST00000556142	DDX10	Q13206	875 aa	Known RBP	13.37	□□□□□ -0.27
HNRNPC-223	ENST00000556142	NPAT	Q14207	1427 aa		13.36	□□□□□ -0.27
HNRNPC-223	ENST00000556142	C11orf95	C9JLR9	678 aa	Predicted RBP	13.36	□□□□□ -0.27
HNRNPC-223	ENST00000556142	WASHC2A	Q641Q2	1341 aa		13.35	□□□□□ -0.27
HNRNPC-223	ENST00000556142	UBAP1L	F5GYI3	381 aa		13.35	□□□□□ -0.27
HNRNPC-223	ENST00000556142	AGL	P35573	1532 aa		13.35	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms