RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 CD109Q6YHK3 1445 aa12.94□□□□□ -0.34
TDP1-210ENST00000554976 ATP10AO60312 1499 aa12.93□□□□□ -0.34
TDP1-210ENST00000554976 ZNF518AQ6AHZ1 1483 aa12.93□□□□□ -0.34
TDP1-210ENST00000554976 NEUROD1Q13562 356 aa12.93□□□□□ -0.34
TDP1-210ENST00000554976 POLR1AO95602 1720 aaPredicted RBP12.93□□□□□ -0.34
TDP1-210ENST00000554976 SCAPERQ9BY12 1400 aa12.93□□□□□ -0.34
TDP1-210ENST00000554976 FOXD1Q16676 465 aa12.92□□□□□ -0.34
TDP1-210ENST00000554976 PLA2R1Q13018 1463 aa12.92□□□□□ -0.34
TDP1-210ENST00000554976 MLH3Q9UHC1 1453 aa12.92□□□□□ -0.34
TDP1-210ENST00000554976 SPHKAPQ2M3C7 1700 aa12.92□□□□□ -0.34
TDP1-210ENST00000554976 TONSLQ96HA7 1378 aa12.91□□□□□ -0.34
TDP1-210ENST00000554976 NUP155O75694 1391 aa12.91□□□□□ -0.34
TDP1-210ENST00000554976 CEP152O94986 1710 aa12.91□□□□□ -0.34
TDP1-210ENST00000554976 ZMYM4Q5VZL5 1548 aa12.9□□□□□ -0.34
TDP1-210ENST00000554976 SLC4A1APQ9BWU0 796 aaKnown RBP12.9□□□□□ -0.34
TDP1-210ENST00000554976 DIP2CQ9Y2E4 1556 aa12.89□□□□□ -0.35
TDP1-210ENST00000554976 LMTK2Q8IWU2 1503 aa12.88□□□□□ -0.35
TDP1-210ENST00000554976 DIEXFQ68CQ4 756 aaKnown RBP12.88□□□□□ -0.35
TDP1-210ENST00000554976 AFAP1Q8N556 730 aa12.88□□□□□ -0.35
TDP1-210ENST00000554976 NPM1P06748 294 aaKnown RBP eCLIP12.87□□□□□ -0.35
TDP1-210ENST00000554976 UHRF1BP1Q6BDS2 1440 aa12.87□□□□□ -0.35
TDP1-210ENST00000554976 TRPM2O94759 1503 aa12.87□□□□□ -0.35
TDP1-210ENST00000554976 SPAG9O60271 1321 aaKnown RBP12.87□□□□□ -0.35
TDP1-210ENST00000554976 PKD2Q13563 968 aa12.86□□□□□ -0.35
TDP1-210ENST00000554976 NEURL4Q96JN8 1562 aa12.86□□□□□ -0.35
TDP1-210ENST00000554976 DHX29Q7Z478 1369 aaKnown RBP12.85□□□□□ -0.35
TDP1-210ENST00000554976 TRPM1Q7Z4N2 1603 aa12.85□□□□□ -0.35
TDP1-210ENST00000554976 EFCAB6Q5THR3 1501 aa12.84□□□□□ -0.35
TDP1-210ENST00000554976 CLTCL1P53675 1640 aa12.84□□□□□ -0.35
TDP1-210ENST00000554976 PTPRTO14522 1441 aa12.84□□□□□ -0.35
TDP1-210ENST00000554976 IFT172Q9UG01 1749 aa12.84□□□□□ -0.35
TDP1-210ENST00000554976 L3MBTL2Q969R5 705 aa12.83□□□□□ -0.35
TDP1-210ENST00000554976 SIGLEC1Q9BZZ2 1709 aa12.83□□□□□ -0.36
TDP1-210ENST00000554976 TSPOAP1O95153 1857 aa12.83□□□□□ -0.36
TDP1-210ENST00000554976 A2MP01023 1474 aa12.83□□□□□ -0.36
TDP1-210ENST00000554976 ZC3H13Q5T200 1668 aaKnown RBP12.83□□□□□ -0.36
TDP1-210ENST00000554976 REREQ9P2R6 1566 aa12.83□□□□□ -0.36
TDP1-210ENST00000554976 LAMC1P11047 1609 aa12.82□□□□□ -0.36
TDP1-210ENST00000554976 CYB5RLQ6IPT4 315 aa12.82□□□□□ -0.36
TDP1-210ENST00000554976 SPATA31E1Q6ZUB1 1445 aa12.81□□□□□ -0.36
TDP1-210ENST00000554976 CAMSAP1Q5T5Y3 1602 aa12.81□□□□□ -0.36
TDP1-210ENST00000554976 RALGAPBQ86X10 1494 aa12.8□□□□□ -0.36
TDP1-210ENST00000554976 NBPF8Q3BBV2 869 aa12.8□□□□□ -0.36
TDP1-210ENST00000554976 MROH2AA6NES4 1674 aa12.79□□□□□ -0.36
TDP1-210ENST00000554976 MADDQ8WXG6 1647 aa12.78□□□□□ -0.36
TDP1-210ENST00000554976 PIK3C2BO00750 1634 aa12.77□□□□□ -0.37
TDP1-210ENST00000554976 ABCC3O15438 1527 aa12.77□□□□□ -0.37
TDP1-210ENST00000554976 KIF1BO60333 1816 aa12.75□□□□□ -0.37
TDP1-210ENST00000554976 CCDC144AA2RUR9 1427 aa12.75□□□□□ -0.37
TDP1-210ENST00000554976 YEATS2Q9ULM3 1422 aa12.74□□□□□ -0.37
TDP1-210ENST00000554976 KIAA1210Q9ULL0 1709 aa12.74□□□□□ -0.37
TDP1-210ENST00000554976 PRAG1Q86YV5 1406 aa12.74□□□□□ -0.37
TDP1-210ENST00000554976 ARHGEF40Q8TER5 1519 aa12.72□□□□□ -0.37
TDP1-210ENST00000554976 IQGAP1P46940 1657 aa12.72□□□□□ -0.37
TDP1-210ENST00000554976 ADGRB3O60242 1522 aa12.72□□□□□ -0.37
TDP1-210ENST00000554976 AGLP35573 1532 aa12.72□□□□□ -0.37
TDP1-210ENST00000554976 SYNMO15061 1565 aa12.71□□□□□ -0.37
TDP1-210ENST00000554976 UGGT1Q9NYU2 1555 aa12.71□□□□□ -0.37
TDP1-210ENST00000554976 PPLO60437 1756 aa12.71□□□□□ -0.37
TDP1-210ENST00000554976 MIER1Q8N108 512 aa12.71□□□□□ -0.38
TDP1-210ENST00000554976 COL17A1Q9UMD9 1497 aaPredicted RBP12.7□□□□□ -0.38
TDP1-210ENST00000554976 PREX1Q8TCU6 1659 aa12.7□□□□□ -0.38
TDP1-210ENST00000554976 RAPGEF3O95398 923 aa12.69□□□□□ -0.38
TDP1-210ENST00000554976 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.69□□□□□ -0.38
TDP1-210ENST00000554976 GPRASP1Q5JY77 1395 aa12.69□□□□□ -0.38
TDP1-210ENST00000554976 HSPA5P11021 654 aaKnown RBP12.69□□□□□ -0.38
TDP1-210ENST00000554976 KANK1Q14678 1352 aa12.69□□□□□ -0.38
TDP1-210ENST00000554976 NPATQ14207 1427 aa12.69□□□□□ -0.38
TDP1-210ENST00000554976 FAM69CQ0P6D2 419 aa12.68□□□□□ -0.38
TDP1-210ENST00000554976 NRXN1Q9ULB1 1477 aa12.68□□□□□ -0.38
TDP1-210ENST00000554976 ARHGAP31Q2M1Z3 1444 aa12.68□□□□□ -0.38
TDP1-210ENST00000554976 KIF3BO15066 747 aa12.67□□□□□ -0.38
TDP1-210ENST00000554976 MYOM2P54296 1465 aa12.67□□□□□ -0.38
TDP1-210ENST00000554976 NOS1P29475 1434 aa12.67□□□□□ -0.38
TDP1-210ENST00000554976 WASHC2AQ641Q2 1341 aa12.65□□□□□ -0.38
TDP1-210ENST00000554976 HIRIP3Q9BW71 556 aaPredicted RBP12.65□□□□□ -0.38
TDP1-210ENST00000554976 CNTLNQ9NXG0 1405 aa12.64□□□□□ -0.39
TDP1-210ENST00000554976 MYO5BQ9ULV0 1848 aa12.64□□□□□ -0.39
TDP1-210ENST00000554976 CLTCQ00610 1675 aaKnown RBP12.64□□□□□ -0.39
TDP1-210ENST00000554976 C11orf95C9JLR9 678 aaPredicted RBP12.63□□□□□ -0.39
TDP1-210ENST00000554976 EIF4G2P78344 907 aaKnown RBP eCLIP12.63□□□□□ -0.39
TDP1-210ENST00000554976 USP47Q96K76 1375 aa12.63□□□□□ -0.39
TDP1-210ENST00000554976 MYO3AQ8NEV4 1616 aa12.62□□□□□ -0.39
TDP1-210ENST00000554976 CCDC7Q96M83 1385 aa12.62□□□□□ -0.39
TDP1-210ENST00000554976 TMEM131LA2VDJ0 1609 aa12.61□□□□□ -0.39
TDP1-210ENST00000554976 CFAP65Q6ZU64 1925 aaKnown RBP12.61□□□□□ -0.39
TDP1-210ENST00000554976 DCAF11Q8TEB1 546 aa12.6□□□□□ -0.39
TDP1-210ENST00000554976 NEXMIFQ5QGS0 1516 aa12.6□□□□□ -0.39
TDP1-210ENST00000554976 SETBP1Q9Y6X0 1596 aa12.59□□□□□ -0.39
TDP1-210ENST00000554976 SPATA31D1Q6ZQQ2 1576 aa12.59□□□□□ -0.39
TDP1-210ENST00000554976 DDX10Q13206 875 aaKnown RBP12.58□□□□□ -0.4
TDP1-210ENST00000554976 KIF7Q2M1P5 1343 aa12.56□□□□□ -0.4
TDP1-210ENST00000554976 MYOM1P52179 1685 aa12.56□□□□□ -0.4
TDP1-210ENST00000554976 ROCK2O75116 1388 aaKnown RBP12.55□□□□□ -0.4
TDP1-210ENST00000554976 SCAF1Q9H7N4 1312 aaKnown RBP12.55□□□□□ -0.4
TDP1-210ENST00000554976 ADGRB1O14514 1584 aa12.55□□□□□ -0.4
TDP1-210ENST00000554976 ARID4BQ4LE39 1312 aaPredicted RBP12.55□□□□□ -0.4
TDP1-210ENST00000554976 ERVK-7P63135 1459 aa12.55□□□□□ -0.4
TDP1-210ENST00000554976 STAC3Q96MF2 364 aa12.55□□□□□ -0.4
TDP1-210ENST00000554976 MYT1LQ9UL68 1186 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms