RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 PPP6R1Q9UPN7 881 aa24.53■■□□□ 1.52
CHMP1A-209ENST00000550872 PLPPR3Q6T4P5 718 aa24.52■■□□□ 1.52
CHMP1A-209ENST00000550872 EIF2AK4Q9P2K8 1649 aaKnown RBP24.51■■□□□ 1.51
CHMP1A-209ENST00000550872 ANKRD50Q9ULJ7 1429 aa24.51■■□□□ 1.51
CHMP1A-209ENST00000550872 CNTLNQ9NXG0 1405 aa24.47■■□□□ 1.51
CHMP1A-209ENST00000550872 WASHC2CQ9Y4E1 1318 aa24.47■■□□□ 1.51
CHMP1A-209ENST00000550872 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.47■■□□□ 1.512e-6■■□□□ 11.4
CHMP1A-209ENST00000550872 CEBPAP49715 358 aaPredicted RBP24.45■■□□□ 1.5
CHMP1A-209ENST00000550872 RNF17Q9BXT8 1623 aaKnown RBP24.45■■□□□ 1.5
CHMP1A-209ENST00000550872 ZMYM3Q14202 1370 aa24.42■■□□□ 1.5
CHMP1A-209ENST00000550872 CLTCQ00610 1675 aaKnown RBP24.42■■□□□ 1.5
CHMP1A-209ENST00000550872 KANK1Q14678 1352 aa24.41■■□□□ 1.5
CHMP1A-209ENST00000550872 NAIPQ13075 1403 aa24.4■■□□□ 1.5
CHMP1A-209ENST00000550872 KDM5DQ9BY66 1539 aa24.4■■□□□ 1.5
CHMP1A-209ENST00000550872 MROH1Q8NDA8 1641 aa24.39■■□□□ 1.5
CHMP1A-209ENST00000550872 LMTK3Q96Q04 1460 aa24.39■■□□□ 1.5
CHMP1A-209ENST00000550872 FAM135AQ9P2D6 1515 aa24.38■■□□□ 1.49
CHMP1A-209ENST00000550872 HFM1A2PYH4 1435 aa24.37■■□□□ 1.49
CHMP1A-209ENST00000550872 MROH2AA6NES4 1674 aa24.37■■□□□ 1.49
CHMP1A-209ENST00000550872 PRDM15P57071 1507 aaPredicted RBP24.36■■□□□ 1.49
CHMP1A-209ENST00000550872 DEPDC5O75140 1603 aa24.36■■□□□ 1.49
CHMP1A-209ENST00000550872 C3P01024 1663 aa24.35■■□□□ 1.49
CHMP1A-209ENST00000550872 ABCC3O15438 1527 aa24.35■■□□□ 1.49
CHMP1A-209ENST00000550872 GCC2Q8IWJ2 1684 aa24.34■■□□□ 1.49
CHMP1A-209ENST00000550872 FBXO41Q8TF61 875 aa24.32■■□□□ 1.48
CHMP1A-209ENST00000550872 ZC3H13Q5T200 1668 aaKnown RBP24.31■■□□□ 1.48
CHMP1A-209ENST00000550872 CEP152O94986 1710 aa24.31■■□□□ 1.48
CHMP1A-209ENST00000550872 NUP155O75694 1391 aa24.29■■□□□ 1.48
CHMP1A-209ENST00000550872 UNC13BO14795 1591 aa24.29■■□□□ 1.48
CHMP1A-209ENST00000550872 VWDEQ8N2E2 1590 aa24.29■■□□□ 1.48
CHMP1A-209ENST00000550872 FBXO31Q5XUX0 539 aaPredicted RBP24.28■■□□□ 1.48
CHMP1A-209ENST00000550872 SETD1BQ9UPS6 1966 aaKnown RBP24.27■■□□□ 1.48
CHMP1A-209ENST00000550872 TRIM52Q96A61 297 aa24.27■■□□□ 1.48
CHMP1A-209ENST00000550872 PZPP20742 1482 aa24.26■■□□□ 1.47
CHMP1A-209ENST00000550872 NPATQ14207 1427 aa24.26■■□□□ 1.47
CHMP1A-209ENST00000550872 SETD5Q9C0A6 1442 aa24.26■■□□□ 1.47
CHMP1A-209ENST00000550872 CAMSAP1Q5T5Y3 1602 aa24.25■■□□□ 1.47
CHMP1A-209ENST00000550872 LMTK2Q8IWU2 1503 aa24.25■■□□□ 1.47
CHMP1A-209ENST00000550872 CFAP65Q6ZU64 1925 aaKnown RBP24.22■■□□□ 1.47
CHMP1A-209ENST00000550872 ARHGAP31Q2M1Z3 1444 aa24.22■■□□□ 1.47
CHMP1A-209ENST00000550872 TRIM26Q12899 539 aaPredicted RBP24.21■■□□□ 1.47
CHMP1A-209ENST00000550872 TNRQ92752 1358 aa24.19■■□□□ 1.46
CHMP1A-209ENST00000550872 HSPA2P54652 639 aa24.19■■□□□ 1.46
CHMP1A-209ENST00000550872 IQGAP3Q86VI3 1631 aa24.19■■□□□ 1.46
CHMP1A-209ENST00000550872 UHRF1BP1Q6BDS2 1440 aa24.18■■□□□ 1.46
CHMP1A-209ENST00000550872 EFCAB6Q5THR3 1501 aa24.17■■□□□ 1.46
CHMP1A-209ENST00000550872 TET3O43151 1660 aa24.17■■□□□ 1.46
CHMP1A-209ENST00000550872 RAB3GAP2Q9H2M9 1393 aa24.16■■□□□ 1.46
CHMP1A-209ENST00000550872 PREX1Q8TCU6 1659 aa24.16■■□□□ 1.46
CHMP1A-209ENST00000550872 ERVK-7P63135 1459 aa24.16■■□□□ 1.46
CHMP1A-209ENST00000550872 ACIN1Q9UKV3 1341 aaKnown RBP24.15■■□□□ 1.46
CHMP1A-209ENST00000550872 SPATA31D1Q6ZQQ2 1576 aa24.13■■□□□ 1.45
CHMP1A-209ENST00000550872 SLC4A1APQ9BWU0 796 aaKnown RBP24.13■■□□□ 1.45
CHMP1A-209ENST00000550872 RPRD2Q5VT52 1461 aaKnown RBP24.12■■□□□ 1.45
CHMP1A-209ENST00000550872 HRCP23327 699 aa24.09■■□□□ 1.45
CHMP1A-209ENST00000550872 PKD2Q13563 968 aa24.09■■□□□ 1.45
CHMP1A-209ENST00000550872 MYO3AQ8NEV4 1616 aa24.09■■□□□ 1.45
CHMP1A-209ENST00000550872 E9PCH4 1651 aa24.08■■□□□ 1.45
CHMP1A-209ENST00000550872 NOS1P29475 1434 aa24.08■■□□□ 1.44
CHMP1A-209ENST00000550872 NLRP1Q9C000 1473 aa24.07■■□□□ 1.44
CHMP1A-209ENST00000550872 MPHOSPH9Q99550 1183 aa24.06■■□□□ 1.44
CHMP1A-209ENST00000550872 A2ML1A8K2U0 1454 aa24.06■■□□□ 1.44
CHMP1A-209ENST00000550872 CEP170BQ9Y4F5 1589 aaPredicted RBP24.04■■□□□ 1.44
CHMP1A-209ENST00000550872 IDI1Q13907 227 aa24.03■■□□□ 1.44
CHMP1A-209ENST00000550872 DMRT2Q9Y5R5 561 aa24.03■■□□□ 1.44
CHMP1A-209ENST00000550872 SLC52A1Q9NWF4 448 aa24.02■■□□□ 1.44
CHMP1A-209ENST00000550872 SYNMO15061 1565 aa24.02■■□□□ 1.44
CHMP1A-209ENST00000550872 CERKQ8TCT0 537 aa24.01■■□□□ 1.43
CHMP1A-209ENST00000550872 ZNF142P52746 1687 aaPredicted RBP24.01■■□□□ 1.43
CHMP1A-209ENST00000550872 THEMISQ8N1K5 641 aaPredicted RBP24■■□□□ 1.43
CHMP1A-209ENST00000550872 STAG3Q9UJ98 1225 aa24■■□□□ 1.43
CHMP1A-209ENST00000550872 FOXD1Q16676 465 aa23.99■■□□□ 1.43
CHMP1A-209ENST00000550872 UGGT1Q9NYU2 1555 aa23.99■■□□□ 1.43
CHMP1A-209ENST00000550872 PTPRTO14522 1441 aa23.97■■□□□ 1.43
CHMP1A-209ENST00000550872 SPHKAPQ2M3C7 1700 aa23.94■■□□□ 1.42
CHMP1A-209ENST00000550872 CHGAP10645 457 aaKnown RBP23.94■■□□□ 1.42
CHMP1A-209ENST00000550872 PIK3C2BO00750 1634 aa23.94■■□□□ 1.42
CHMP1A-209ENST00000550872 STRCQ7RTU9 1775 aa23.91■■□□□ 1.42
CHMP1A-209ENST00000550872 PCGF6Q9BYE7 350 aa23.91■■□□□ 1.42
CHMP1A-209ENST00000550872 PLA2R1Q13018 1463 aa23.91■■□□□ 1.42
CHMP1A-209ENST00000550872 UBR1Q8IWV7 1749 aa23.9■■□□□ 1.42
CHMP1A-209ENST00000550872 NCKAP5LQ9HCH0 1330 aa23.9■■□□□ 1.42
CHMP1A-209ENST00000550872 ANKLE2Q86XL3 938 aa23.89■■□□□ 1.41
CHMP1A-209ENST00000550872 TRPM2O94759 1503 aa23.89■■□□□ 1.41
CHMP1A-209ENST00000550872 ADGRB3O60242 1522 aa23.86■■□□□ 1.41
CHMP1A-209ENST00000550872 KDM5AP29375 1690 aaKnown RBP23.84■■□□□ 1.41
CHMP1A-209ENST00000550872 TMEM2Q9UHN6 1383 aa23.84■■□□□ 1.41
CHMP1A-209ENST00000550872 CLTCL1P53675 1640 aa23.84■■□□□ 1.41
CHMP1A-209ENST00000550872 TXNDC2Q86VQ3 553 aa23.83■■□□□ 1.41
CHMP1A-209ENST00000550872 EID1Q9Y6B2 187 aa23.83■■□□□ 1.41
CHMP1A-209ENST00000550872 TMEM131LA2VDJ0 1609 aa23.82■■□□□ 1.4
CHMP1A-209ENST00000550872 CCDC144AA2RUR9 1427 aa23.82■■□□□ 1.4
CHMP1A-209ENST00000550872 ARHGAP23Q9P227 1491 aa23.81■■□□□ 1.4
CHMP1A-209ENST00000550872 SLIT1O75093 1534 aa23.8■■□□□ 1.4
CHMP1A-209ENST00000550872 MYO5BQ9ULV0 1848 aa23.8■■□□□ 1.4
CHMP1A-209ENST00000550872 LTKP29376 864 aa23.8■■□□□ 1.4
CHMP1A-209ENST00000550872 ZNF326Q5BKZ1 582 aaKnown RBP23.8■■□□□ 1.4
CHMP1A-209ENST00000550872 HDGFP51858 240 aaKnown RBP23.79■■□□□ 1.4
CHMP1A-209ENST00000550872 ANKRD30BQ9BXX2 1392 aa23.78■■□□□ 1.4
CHMP1A-209ENST00000550872 KIF1BO60333 1816 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 156.7 ms