RNA–Protein interactions for RNA: ENST00000549249.5

DEPDC4-207, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-207ENST00000549249 HFM1A2PYH4 1435 aa12.17□□□□□ -0.46
DEPDC4-207ENST00000549249 MAST1Q9Y2H9 1570 aa12.17□□□□□ -0.46
DEPDC4-207ENST00000549249 NAIPQ13075 1403 aa12.16□□□□□ -0.46
DEPDC4-207ENST00000549249 SETD5Q9C0A6 1442 aa12.16□□□□□ -0.46
DEPDC4-207ENST00000549249 KDM6BO15054 1643 aa12.15□□□□□ -0.46
DEPDC4-207ENST00000549249 C9orf84Q5VXU9 1444 aa12.15□□□□□ -0.46
DEPDC4-207ENST00000549249 TRAPPC8Q9Y2L5 1435 aa12.15□□□□□ -0.46
DEPDC4-207ENST00000549249 CHIC2Q9UKJ5 165 aa12.15□□□□□ -0.46
DEPDC4-207ENST00000549249 ROCK1Q13464 1354 aa12.15□□□□□ -0.46
DEPDC4-207ENST00000549249 RAB3GAP2Q9H2M9 1393 aa12.15□□□□□ -0.46
DEPDC4-207ENST00000549249 ADGRL1O94910 1474 aa12.14□□□□□ -0.47
DEPDC4-207ENST00000549249 NEO1Q92859 1461 aa12.13□□□□□ -0.47
DEPDC4-207ENST00000549249 NCOA1Q15788 1441 aa12.12□□□□□ -0.47
DEPDC4-207ENST00000549249 RRP7BPQ9NSQ0 103 aa12.12□□□□□ -0.47
DEPDC4-207ENST00000549249 PLXNC1O60486 1568 aa12.12□□□□□ -0.47
DEPDC4-207ENST00000549249 SCAPERQ9BY12 1400 aa12.11□□□□□ -0.47
DEPDC4-207ENST00000549249 INO80Q9ULG1 1556 aaPredicted RBP12.11□□□□□ -0.47
DEPDC4-207ENST00000549249 RICTORQ6R327 1708 aa12.11□□□□□ -0.47
DEPDC4-207ENST00000549249 RSPH4AQ5TD94 716 aa12.1□□□□□ -0.47
DEPDC4-207ENST00000549249 ZFYVE16Q7Z3T8 1539 aa12.1□□□□□ -0.47
DEPDC4-207ENST00000549249 KDM5CP41229 1560 aa12.09□□□□□ -0.47
DEPDC4-207ENST00000549249 POGZQ7Z3K3 1410 aa12.09□□□□□ -0.47
DEPDC4-207ENST00000549249 FRMPD1Q5SYB0 1578 aa12.09□□□□□ -0.47
DEPDC4-207ENST00000549249 ANKRD30AQ9BXX3 1397 aa12.08□□□□□ -0.48
DEPDC4-207ENST00000549249 KIDINS220Q9ULH0 1771 aa12.08□□□□□ -0.48
DEPDC4-207ENST00000549249 DHX57Q6P158 1386 aaKnown RBP12.07□□□□□ -0.48
DEPDC4-207ENST00000549249 ATP7AQ04656 1500 aa12.07□□□□□ -0.48
DEPDC4-207ENST00000549249 TSPY4P0CV99 314 aa12.07□□□□□ -0.48
DEPDC4-207ENST00000549249 TSPY10P0CW01 314 aa12.07□□□□□ -0.48
DEPDC4-207ENST00000549249 AFAP1Q8N556 730 aa12.07□□□□□ -0.48
DEPDC4-207ENST00000549249 ZNF518AQ6AHZ1 1483 aa12.07□□□□□ -0.48
DEPDC4-207ENST00000549249 TEX14Q8IWB6 1497 aa12.07□□□□□ -0.48
DEPDC4-207ENST00000549249 RTEL1-TNFRSF6BF6WH68 1400 aa12.06□□□□□ -0.48
DEPDC4-207ENST00000549249 HRCP23327 699 aa12.06□□□□□ -0.48
DEPDC4-207ENST00000549249 KIF15Q9NS87 1388 aa12.05□□□□□ -0.48
DEPDC4-207ENST00000549249 HECW2Q9P2P5 1572 aa12.05□□□□□ -0.48
DEPDC4-207ENST00000549249 C19orf67A6NJJ6 358 aa12.05□□□□□ -0.48
DEPDC4-207ENST00000549249 DENND4BO75064 1496 aaPredicted RBP12.05□□□□□ -0.48
DEPDC4-207ENST00000549249 KDM4FA0A1W2PPD8 638 aa12.04□□□□□ -0.48
DEPDC4-207ENST00000549249 SPAG9O60271 1321 aaKnown RBP12.04□□□□□ -0.48
DEPDC4-207ENST00000549249 ANKRD50Q9ULJ7 1429 aa12.03□□□□□ -0.48
DEPDC4-207ENST00000549249 DUOX2Q9NRD8 1548 aa12.03□□□□□ -0.48
DEPDC4-207ENST00000549249 ABCA6Q8N139 1617 aa12.03□□□□□ -0.48
DEPDC4-207ENST00000549249 ZMYM4Q5VZL5 1548 aa12.02□□□□□ -0.48
DEPDC4-207ENST00000549249 CCER1Q8TC90 406 aaPredicted RBP12.02□□□□□ -0.49
DEPDC4-207ENST00000549249 MLH3Q9UHC1 1453 aa12.02□□□□□ -0.49
DEPDC4-207ENST00000549249 PRR29P0C7W0 189 aa12.01□□□□□ -0.49
DEPDC4-207ENST00000549249 COL17A1Q9UMD9 1497 aaPredicted RBP12.01□□□□□ -0.49
DEPDC4-207ENST00000549249 UNC13BO14795 1591 aa12.01□□□□□ -0.49
DEPDC4-207ENST00000549249 SPDYE4A6NLX3 237 aa12□□□□□ -0.49
DEPDC4-207ENST00000549249 RAPGEF3O95398 923 aa12□□□□□ -0.49
DEPDC4-207ENST00000549249 CHADLQ6NUI6 762 aa12□□□□□ -0.49
DEPDC4-207ENST00000549249 ERBINQ96RT1 1412 aa12□□□□□ -0.49
DEPDC4-207ENST00000549249 DIP2CQ9Y2E4 1556 aa12□□□□□ -0.49
DEPDC4-207ENST00000549249 KDM5DQ9BY66 1539 aa11.99□□□□□ -0.49
DEPDC4-207ENST00000549249 EIF2AK4Q9P2K8 1649 aaKnown RBP11.98□□□□□ -0.49
DEPDC4-207ENST00000549249 PZPP20742 1482 aa11.98□□□□□ -0.49
DEPDC4-207ENST00000549249 DEPDC5O75140 1603 aa11.97□□□□□ -0.49
DEPDC4-207ENST00000549249 MAGI2Q86UL8 1455 aa11.97□□□□□ -0.49
DEPDC4-207ENST00000549249 YEATS2Q9ULM3 1422 aa11.96□□□□□ -0.49
DEPDC4-207ENST00000549249 BCORL1Q5H9F3 1711 aa11.96□□□□□ -0.49
DEPDC4-207ENST00000549249 MROH1Q8NDA8 1641 aa11.96□□□□□ -0.5
DEPDC4-207ENST00000549249 A2MP01023 1474 aa11.95□□□□□ -0.5
DEPDC4-207ENST00000549249 TRIM52Q96A61 297 aa11.95□□□□□ -0.5
DEPDC4-207ENST00000549249 IQGAP3Q86VI3 1631 aa11.95□□□□□ -0.5
DEPDC4-207ENST00000549249 DHX29Q7Z478 1369 aaKnown RBP11.94□□□□□ -0.5
DEPDC4-207ENST00000549249 RNF17Q9BXT8 1623 aaKnown RBP11.94□□□□□ -0.5
DEPDC4-207ENST00000549249 CLSPNQ9HAW4 1339 aa11.93□□□□□ -0.5
DEPDC4-207ENST00000549249 ARHGEF40Q8TER5 1519 aa11.93□□□□□ -0.5
DEPDC4-207ENST00000549249 MYT1LQ9UL68 1186 aa11.93□□□□□ -0.5
DEPDC4-207ENST00000549249 SIGLEC1Q9BZZ2 1709 aa11.93□□□□□ -0.5
DEPDC4-207ENST00000549249 ACIN1Q9UKV3 1341 aaKnown RBP11.92□□□□□ -0.5
DEPDC4-207ENST00000549249 FAM135AQ9P2D6 1515 aa11.92□□□□□ -0.5
DEPDC4-207ENST00000549249 GABBR2O75899 941 aa11.92□□□□□ -0.5
DEPDC4-207ENST00000549249 VWDEQ8N2E2 1590 aa11.92□□□□□ -0.5
DEPDC4-207ENST00000549249 PRDM15P57071 1507 aaPredicted RBP11.91□□□□□ -0.5
DEPDC4-207ENST00000549249 MPHOSPH9Q99550 1183 aa11.91□□□□□ -0.5
DEPDC4-207ENST00000549249 REREQ9P2R6 1566 aa11.91□□□□□ -0.5
DEPDC4-207ENST00000549249 NUP155O75694 1391 aa11.91□□□□□ -0.5
DEPDC4-207ENST00000549249 CEP152O94986 1710 aa11.89□□□□□ -0.51
DEPDC4-207ENST00000549249 ATP10AO60312 1499 aa11.89□□□□□ -0.51
DEPDC4-207ENST00000549249 ZEB1P37275 1124 aaPredicted RBP11.88□□□□□ -0.51
DEPDC4-207ENST00000549249 TET3O43151 1660 aa11.87□□□□□ -0.51
DEPDC4-207ENST00000549249 KIF3BO15066 747 aa11.87□□□□□ -0.51
DEPDC4-207ENST00000549249 E9PCH4 1651 aa11.87□□□□□ -0.51
DEPDC4-207ENST00000549249 ANKRD30BQ9BXX2 1392 aa11.86□□□□□ -0.51
DEPDC4-207ENST00000549249 AGLP35573 1532 aa11.86□□□□□ -0.51
DEPDC4-207ENST00000549249 PKD2Q13563 968 aa11.85□□□□□ -0.51
DEPDC4-207ENST00000549249 LMTK2Q8IWU2 1503 aa11.85□□□□□ -0.51
DEPDC4-207ENST00000549249 SIN3AQ96ST3 1273 aa11.84□□□□□ -0.51
DEPDC4-207ENST00000549249 ABCC3O15438 1527 aa11.82□□□□□ -0.52
DEPDC4-207ENST00000549249 EFCAB6Q5THR3 1501 aa11.82□□□□□ -0.52
DEPDC4-207ENST00000549249 ZC3H13Q5T200 1668 aaKnown RBP11.82□□□□□ -0.52
DEPDC4-207ENST00000549249 FKBP8Q14318 412 aa11.82□□□□□ -0.52
DEPDC4-207ENST00000549249 SPHKAPQ2M3C7 1700 aa11.82□□□□□ -0.52
DEPDC4-207ENST00000549249 CAMSAP1Q5T5Y3 1602 aa11.82□□□□□ -0.52
DEPDC4-207ENST00000549249 FARP1Q9Y4F1 1045 aaPredicted RBP11.81□□□□□ -0.52
DEPDC4-207ENST00000549249 PLA2R1Q13018 1463 aa11.81□□□□□ -0.52
DEPDC4-207ENST00000549249 KANK1Q14678 1352 aa11.8□□□□□ -0.52
DEPDC4-207ENST00000549249 CFAP65Q6ZU64 1925 aaKnown RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms