RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 DNMT1P26358 1616 aaKnown RBP24.27■■□□□ 1.48
CHMP1A-204ENST00000547687 HFM1A2PYH4 1435 aa24.26■■□□□ 1.47
CHMP1A-204ENST00000547687 DAPK1P53355 1430 aa24.26■■□□□ 1.47
CHMP1A-204ENST00000547687 MAST1Q9Y2H9 1570 aa24.26■■□□□ 1.47
CHMP1A-204ENST00000547687 KIF3BO15066 747 aa24.25■■□□□ 1.47
CHMP1A-204ENST00000547687 ABCC5O15440 1437 aa24.25■■□□□ 1.47
CHMP1A-204ENST00000547687 PREX1Q8TCU6 1659 aa24.25■■□□□ 1.47
CHMP1A-204ENST00000547687 SETD1BQ9UPS6 1966 aaKnown RBP24.23■■□□□ 1.47
CHMP1A-204ENST00000547687 MROH2AA6NES4 1674 aa24.22■■□□□ 1.47
CHMP1A-204ENST00000547687 NAIPQ13075 1403 aa24.22■■□□□ 1.47
CHMP1A-204ENST00000547687 RRP7BPQ9NSQ0 103 aa24.21■■□□□ 1.47
CHMP1A-204ENST00000547687 CNTLNQ9NXG0 1405 aa24.21■■□□□ 1.47
CHMP1A-204ENST00000547687 ZMYM3Q14202 1370 aa24.2■■□□□ 1.46
CHMP1A-204ENST00000547687 ZNF316A6NFI3 1004 aaPredicted RBP24.16■■□□□ 1.46
CHMP1A-204ENST00000547687 GCC2Q8IWJ2 1684 aa24.15■■□□□ 1.46
CHMP1A-204ENST00000547687 SHANK2Q9UPX8 1470 aa24.14■■□□□ 1.46
CHMP1A-204ENST00000547687 UHRF1BP1Q6BDS2 1440 aa24.13■■□□□ 1.45
CHMP1A-204ENST00000547687 ROCK1Q13464 1354 aa24.13■■□□□ 1.45
CHMP1A-204ENST00000547687 KIF15Q9NS87 1388 aa24.13■■□□□ 1.45
CHMP1A-204ENST00000547687 DUOX2Q9NRD8 1548 aa24.1■■□□□ 1.45
CHMP1A-204ENST00000547687 DIEXFQ68CQ4 756 aaKnown RBP24.1■■□□□ 1.45
CHMP1A-204ENST00000547687 WASHC2CQ9Y4E1 1318 aa24.1■■□□□ 1.45
CHMP1A-204ENST00000547687 KDM5DQ9BY66 1539 aa24.1■■□□□ 1.45
CHMP1A-204ENST00000547687 RNF17Q9BXT8 1623 aaKnown RBP24.1■■□□□ 1.45
CHMP1A-204ENST00000547687 EIF2AK4Q9P2K8 1649 aaKnown RBP24.09■■□□□ 1.45
CHMP1A-204ENST00000547687 CFAP65Q6ZU64 1925 aaKnown RBP24.09■■□□□ 1.45
CHMP1A-204ENST00000547687 MROH1Q8NDA8 1641 aa24.08■■□□□ 1.45
CHMP1A-204ENST00000547687 CEP152O94986 1710 aa24.07■■□□□ 1.44
CHMP1A-204ENST00000547687 PPP6R1Q9UPN7 881 aa24.07■■□□□ 1.44
CHMP1A-204ENST00000547687 FBXO31Q5XUX0 539 aaPredicted RBP24.06■■□□□ 1.44
CHMP1A-204ENST00000547687 NCOA1Q15788 1441 aa24.06■■□□□ 1.44
CHMP1A-204ENST00000547687 MYO3AQ8NEV4 1616 aa24.05■■□□□ 1.44
CHMP1A-204ENST00000547687 STRCQ7RTU9 1775 aa24.05■■□□□ 1.44
CHMP1A-204ENST00000547687 NPATQ14207 1427 aa24.05■■□□□ 1.44
CHMP1A-204ENST00000547687 ADGRL2O95490 1459 aa24.05■■□□□ 1.44
CHMP1A-204ENST00000547687 ANKRD30AQ9BXX3 1397 aa24.04■■□□□ 1.44
CHMP1A-204ENST00000547687 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.02■■□□□ 1.44
CHMP1A-204ENST00000547687 ABCC3O15438 1527 aa24.02■■□□□ 1.44
CHMP1A-204ENST00000547687 ERBINQ96RT1 1412 aa24■■□□□ 1.43
CHMP1A-204ENST00000547687 ZC3H13Q5T200 1668 aaKnown RBP23.99■■□□□ 1.43
CHMP1A-204ENST00000547687 PZPP20742 1482 aa23.99■■□□□ 1.43
CHMP1A-204ENST00000547687 ZNF142P52746 1687 aaPredicted RBP23.97■■□□□ 1.43
CHMP1A-204ENST00000547687 FAM135AQ9P2D6 1515 aa23.97■■□□□ 1.43
CHMP1A-204ENST00000547687 CAMSAP1Q5T5Y3 1602 aa23.97■■□□□ 1.43
CHMP1A-204ENST00000547687 CEP170BQ9Y4F5 1589 aaPredicted RBP23.97■■□□□ 1.43
CHMP1A-204ENST00000547687 TRIM52Q96A61 297 aa23.96■■□□□ 1.43
CHMP1A-204ENST00000547687 PRDM15P57071 1507 aaPredicted RBP23.96■■□□□ 1.43
CHMP1A-204ENST00000547687 DEPDC5O75140 1603 aa23.95■■□□□ 1.43
CHMP1A-204ENST00000547687 TNRQ92752 1358 aa23.94■■□□□ 1.42
CHMP1A-204ENST00000547687 ANKRD50Q9ULJ7 1429 aa23.9■■□□□ 1.42
CHMP1A-204ENST00000547687 NCKAP5LQ9HCH0 1330 aa23.88■■□□□ 1.41
CHMP1A-204ENST00000547687 A2ML1A8K2U0 1454 aa23.88■■□□□ 1.41
CHMP1A-204ENST00000547687 ACIN1Q9UKV3 1341 aaKnown RBP23.87■■□□□ 1.41
CHMP1A-204ENST00000547687 SIN3AQ96ST3 1273 aa23.86■■□□□ 1.41
CHMP1A-204ENST00000547687 ERVK-7P63135 1459 aa23.86■■□□□ 1.41
CHMP1A-204ENST00000547687 SPATA31D1Q6ZQQ2 1576 aa23.85■■□□□ 1.41
CHMP1A-204ENST00000547687 MPHOSPH9Q99550 1183 aa23.85■■□□□ 1.41
CHMP1A-204ENST00000547687 KANK1Q14678 1352 aa23.85■■□□□ 1.41
CHMP1A-204ENST00000547687 VWDEQ8N2E2 1590 aa23.84■■□□□ 1.41
CHMP1A-204ENST00000547687 ILDR1Q86SU0 546 aaPredicted RBP23.83■■□□□ 1.4
CHMP1A-204ENST00000547687 NEUROD1Q13562 356 aa23.82■■□□□ 1.4
CHMP1A-204ENST00000547687 DMRT2Q9Y5R5 561 aa23.8■■□□□ 1.4
CHMP1A-204ENST00000547687 UGGT1Q9NYU2 1555 aa23.8■■□□□ 1.4
CHMP1A-204ENST00000547687 NLRP1Q9C000 1473 aa23.79■■□□□ 1.4
CHMP1A-204ENST00000547687 TIMELESSQ9UNS1 1208 aa23.78■■□□□ 1.4
CHMP1A-204ENST00000547687 POLR1AO95602 1720 aaPredicted RBP23.78■■□□□ 1.4
CHMP1A-204ENST00000547687 ARHGAP31Q2M1Z3 1444 aa23.77■■□□□ 1.4
CHMP1A-204ENST00000547687 PLA2R1Q13018 1463 aa23.77■■□□□ 1.4
CHMP1A-204ENST00000547687 SLC4A1APQ9BWU0 796 aaKnown RBP23.77■■□□□ 1.4
CHMP1A-204ENST00000547687 EFCAB6Q5THR3 1501 aa23.77■■□□□ 1.4
CHMP1A-204ENST00000547687 LMTK2Q8IWU2 1503 aa23.77■■□□□ 1.4
CHMP1A-204ENST00000547687 UNC13BO14795 1591 aa23.77■■□□□ 1.4
CHMP1A-204ENST00000547687 PTPRTO14522 1441 aa23.76■■□□□ 1.39
CHMP1A-204ENST00000547687 FOXD1Q16676 465 aa23.75■■□□□ 1.39
CHMP1A-204ENST00000547687 UBR1Q8IWV7 1749 aa23.74■■□□□ 1.39
CHMP1A-204ENST00000547687 NUP155O75694 1391 aa23.72■■□□□ 1.39
CHMP1A-204ENST00000547687 TET3O43151 1660 aa23.72■■□□□ 1.39
CHMP1A-204ENST00000547687 PKD2Q13563 968 aa23.72■■□□□ 1.39
CHMP1A-204ENST00000547687 PIK3C2BO00750 1634 aa23.72■■□□□ 1.39
CHMP1A-204ENST00000547687 SYNMO15061 1565 aa23.72■■□□□ 1.39
CHMP1A-204ENST00000547687 NEURL4Q96JN8 1562 aa23.72■■□□□ 1.39
CHMP1A-204ENST00000547687 THEMISQ8N1K5 641 aaPredicted RBP23.71■■□□□ 1.39
CHMP1A-204ENST00000547687 CERKQ8TCT0 537 aa23.69■■□□□ 1.38
CHMP1A-204ENST00000547687 E9PCH4 1651 aa23.69■■□□□ 1.38
CHMP1A-204ENST00000547687 IQGAP3Q86VI3 1631 aa23.68■■□□□ 1.38
CHMP1A-204ENST00000547687 ZNF335Q9H4Z2 1342 aaPredicted RBP23.67■■□□□ 1.38
CHMP1A-204ENST00000547687 ANKLE2Q86XL3 938 aa23.66■■□□□ 1.38
CHMP1A-204ENST00000547687 ANKRD30BQ9BXX2 1392 aa23.66■■□□□ 1.38
CHMP1A-204ENST00000547687 IDI1Q13907 227 aa23.66■■□□□ 1.38
CHMP1A-204ENST00000547687 NOS1P29475 1434 aa23.64■■□□□ 1.38
CHMP1A-204ENST00000547687 LTBP4Q8N2S1 1624 aa23.64■■□□□ 1.38
CHMP1A-204ENST00000547687 MYO5BQ9ULV0 1848 aa23.64■■□□□ 1.38
CHMP1A-204ENST00000547687 MIER1Q8N108 512 aa23.64■■□□□ 1.38
CHMP1A-204ENST00000547687 TONSLQ96HA7 1378 aa23.63■■□□□ 1.37
CHMP1A-204ENST00000547687 PPP1R15AO75807 674 aaPredicted RBP23.62■■□□□ 1.37
CHMP1A-204ENST00000547687 FBXO41Q8TF61 875 aa23.62■■□□□ 1.37
CHMP1A-204ENST00000547687 STAG3Q9UJ98 1225 aa23.62■■□□□ 1.37
CHMP1A-204ENST00000547687 IQGAP1P46940 1657 aa23.61■■□□□ 1.37
CHMP1A-204ENST00000547687 RPRD2Q5VT52 1461 aaKnown RBP23.6■■□□□ 1.37
CHMP1A-204ENST00000547687 NPHP4O75161 1426 aaPredicted RBP23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms