RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	SAMD9L	Q8IVG5	1584 aa		12.34	□□□□□ -0.43
SNHG1-223	ENST00000545440	SUPT6H	Q7KZ85	1726 aa	Known RBP	12.34	□□□□□ -0.43
SNHG1-223	ENST00000545440	RIMS1	Q86UR5	1692 aa	Known RBP	12.33	□□□□□ -0.44
SNHG1-223	ENST00000545440	EFCAB2	Q5VUJ9	269 aa		12.33	□□□□□ -0.44
SNHG1-223	ENST00000545440	TIAM1	Q13009	1591 aa		12.32	□□□□□ -0.44
SNHG1-223	ENST00000545440	RERE	Q9P2R6	1566 aa		12.32	□□□□□ -0.44
SNHG1-223	ENST00000545440	YEATS2	Q9ULM3	1422 aa		12.32	□□□□□ -0.44
SNHG1-223	ENST00000545440	ABCA6	Q8N139	1617 aa		12.32	□□□□□ -0.44
SNHG1-223	ENST00000545440	DIP2C	Q9Y2E4	1556 aa		12.31	□□□□□ -0.44
SNHG1-223	ENST00000545440	KIDINS220	Q9ULH0	1771 aa		12.31	□□□□□ -0.44
SNHG1-223	ENST00000545440	MNX1	P50219	401 aa	Predicted RBP	12.31	□□□□□ -0.44
SNHG1-223	ENST00000545440	GPATCH8	Q9UKJ3	1502 aa	Known RBP	12.3	□□□□□ -0.44
SNHG1-223	ENST00000545440	C9orf84	Q5VXU9	1444 aa		12.29	□□□□□ -0.44
SNHG1-223	ENST00000545440	VPS8	Q8N3P4	1428 aa		12.29	□□□□□ -0.44
SNHG1-223	ENST00000545440	SYCP2	Q9BX26	1530 aa		12.29	□□□□□ -0.44
SNHG1-223	ENST00000545440	CHGA	P10645	457 aa	Known RBP	12.29	□□□□□ -0.44
SNHG1-223	ENST00000545440	MTUS2	Q5JR59	1369 aa		12.29	□□□□□ -0.44
SNHG1-223	ENST00000545440	ARHGEF12	Q9NZN5	1544 aa		12.28	□□□□□ -0.44
SNHG1-223	ENST00000545440	PRKAR2A	P13861	404 aa	Known RBP	12.28	□□□□□ -0.44
SNHG1-223	ENST00000545440	HAP1	P54257	671 aa	Predicted RBP	12.28	□□□□□ -0.44
SNHG1-223	ENST00000545440	ATP10A	O60312	1499 aa		12.27	□□□□□ -0.44
SNHG1-223	ENST00000545440	PTPRM	P28827	1452 aa		12.27	□□□□□ -0.44
SNHG1-223	ENST00000545440	MLH3	Q9UHC1	1453 aa		12.27	□□□□□ -0.44
SNHG1-223	ENST00000545440	INO80	Q9ULG1	1556 aa	Predicted RBP	12.27	□□□□□ -0.44
SNHG1-223	ENST00000545440	PAK3	O75914	559 aa	Predicted RBP	12.27	□□□□□ -0.45
SNHG1-223	ENST00000545440	CHADL	Q6NUI6	762 aa		12.27	□□□□□ -0.45
SNHG1-223	ENST00000545440	PLEKHH2	Q8IVE3	1493 aa		12.27	□□□□□ -0.45
SNHG1-223	ENST00000545440	RIOK3	O14730	519 aa	Known RBP	12.26	□□□□□ -0.45
SNHG1-223	ENST00000545440	FARP1	Q9Y4F1	1045 aa	Predicted RBP	12.26	□□□□□ -0.45
SNHG1-223	ENST00000545440	MAP3K1	Q13233	1512 aa		12.26	□□□□□ -0.45
SNHG1-223	ENST00000545440	RASEF	Q8IZ41	740 aa		12.25	□□□□□ -0.45
SNHG1-223	ENST00000545440	TRAPPC8	Q9Y2L5	1435 aa		12.25	□□□□□ -0.45
SNHG1-223	ENST00000545440	ADGB	Q8N7X0	1667 aa		12.25	□□□□□ -0.45
SNHG1-223	ENST00000545440	CHRM1	P11229	460 aa	Predicted RBP	12.24	□□□□□ -0.45
SNHG1-223	ENST00000545440	CCNB3	Q8WWL7	1395 aa		12.24	□□□□□ -0.45
SNHG1-223	ENST00000545440	KIAA1107	Q9UPP5	1409 aa		12.24	□□□□□ -0.45
SNHG1-223	ENST00000545440	AGL	P35573	1532 aa		12.23	□□□□□ -0.45
SNHG1-223	ENST00000545440	ATP7A	Q04656	1500 aa		12.23	□□□□□ -0.45
SNHG1-223	ENST00000545440	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.23	□□□□□ -0.45
SNHG1-223	ENST00000545440	CHRDL2	Q6WN34	429 aa		12.23	□□□□□ -0.45
SNHG1-223	ENST00000545440	NCOA2	Q15596	1464 aa		12.22	□□□□□ -0.45
SNHG1-223	ENST00000545440	LOC105371045	A0A1W2PR82	267 aa		12.22	□□□□□ -0.45
SNHG1-223	ENST00000545440	PLXNC1	O60486	1568 aa		12.22	□□□□□ -0.45
SNHG1-223	ENST00000545440	LRRC9	Q6ZRR7	1453 aa		12.21	□□□□□ -0.45
SNHG1-223	ENST00000545440	AFAP1	Q8N556	730 aa		12.21	□□□□□ -0.45
SNHG1-223	ENST00000545440	MROH2A	A6NES4	1674 aa		12.2	□□□□□ -0.46
SNHG1-223	ENST00000545440	PREX1	Q8TCU6	1659 aa		12.2	□□□□□ -0.46
SNHG1-223	ENST00000545440	FXR2	P51116	673 aa	Known RBP eCLIP	12.2	□□□□□ -0.46
SNHG1-223	ENST00000545440	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	12.2	□□□□□ -0.46
SNHG1-223	ENST00000545440	SPRYD3	Q8NCJ5	442 aa		12.2	□□□□□ -0.46
SNHG1-223	ENST00000545440	CFAP44	Q96MT7	982 aa		12.2	□□□□□ -0.46
SNHG1-223	ENST00000545440	TSPYL2	Q9H2G4	693 aa	Predicted RBP	12.2	□□□□□ -0.46
SNHG1-223	ENST00000545440	C3	P01024	1663 aa		12.19	□□□□□ -0.46
SNHG1-223	ENST00000545440	VGF	O15240	615 aa	Predicted RBP	12.19	□□□□□ -0.46
SNHG1-223	ENST00000545440	SETD1B	Q9UPS6	1966 aa	Known RBP	12.19	□□□□□ -0.46
SNHG1-223	ENST00000545440	ARHGEF5	Q12774	1597 aa		12.18	□□□□□ -0.46
SNHG1-223	ENST00000545440	CFDP1	Q9UEE9	299 aa	Predicted RBP	12.18	□□□□□ -0.46
SNHG1-223	ENST00000545440	CAMSAP2	Q08AD1	1489 aa		12.18	□□□□□ -0.46
SNHG1-223	ENST00000545440	PYGB	P11216	843 aa		12.17	□□□□□ -0.46
SNHG1-223	ENST00000545440	HS6ST3	Q8IZP7	471 aa		12.17	□□□□□ -0.46
SNHG1-223	ENST00000545440	LMTK3	Q96Q04	1460 aa		12.16	□□□□□ -0.46
SNHG1-223	ENST00000545440	MBD5	Q9P267	1494 aa		12.16	□□□□□ -0.46
SNHG1-223	ENST00000545440	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.16	□□□□□ -0.46
SNHG1-223	ENST00000545440	CROCC2	H7BZ55	1655 aa		12.16	□□□□□ -0.46
SNHG1-223	ENST00000545440	CCDC141	Q6ZP82	1450 aa		12.15	□□□□□ -0.46
SNHG1-223	ENST00000545440	MYT1L	Q9UL68	1186 aa		12.14	□□□□□ -0.47
SNHG1-223	ENST00000545440	SPAG9	O60271	1321 aa	Known RBP	12.13	□□□□□ -0.47
SNHG1-223	ENST00000545440	CLTC	Q00610	1675 aa	Known RBP	12.13	□□□□□ -0.47
SNHG1-223	ENST00000545440	STK25	O00506	426 aa		12.13	□□□□□ -0.47
SNHG1-223	ENST00000545440	ZNF467	Q7Z7K2	595 aa	Predicted RBP	12.13	□□□□□ -0.47
SNHG1-223	ENST00000545440	A2M	P01023	1474 aa		12.13	□□□□□ -0.47
SNHG1-223	ENST00000545440	MAST1	Q9Y2H9	1570 aa		12.13	□□□□□ -0.47
SNHG1-223	ENST00000545440	RTEL1-TNFRSF6B	F6WH68	1400 aa		12.12	□□□□□ -0.47
SNHG1-223	ENST00000545440	HNRNPM	P52272	730 aa	Known RBP eCLIP	12.12	□□□□□ -0.47
SNHG1-223	ENST00000545440	MLEC	Q14165	292 aa		12.11	□□□□□ -0.47
SNHG1-223	ENST00000545440	MYOM3	Q5VTT5	1437 aa		12.11	□□□□□ -0.47
SNHG1-223	ENST00000545440	CNTLN	Q9NXG0	1405 aa		12.11	□□□□□ -0.47
SNHG1-223	ENST00000545440	PIP4P2	Q8N4L2	257 aa		12.1	□□□□□ -0.47
SNHG1-223	ENST00000545440	RNF25	Q96BH1	459 aa	Predicted RBP	12.1	□□□□□ -0.47
SNHG1-223	ENST00000545440	FAM135A	Q9P2D6	1515 aa		12.1	□□□□□ -0.47
SNHG1-223	ENST00000545440	MIA2	Q96PC5	1412 aa		12.1	□□□□□ -0.47
SNHG1-223	ENST00000545440	ZNF644	Q9H582	1327 aa	Predicted RBP	12.1	□□□□□ -0.47
SNHG1-223	ENST00000545440	PTPN23	Q9H3S7	1636 aa		12.09	□□□□□ -0.47
SNHG1-223	ENST00000545440	EIF2AK4	Q9P2K8	1649 aa	Known RBP	12.09	□□□□□ -0.47
SNHG1-223	ENST00000545440	RYDEN	Q9NUL5	291 aa	Known RBP	12.09	□□□□□ -0.47
SNHG1-223	ENST00000545440	ZNF142	P52746	1687 aa	Predicted RBP	12.08	□□□□□ -0.48
SNHG1-223	ENST00000545440	VSIG10	Q8N0Z9	540 aa		12.08	□□□□□ -0.48
SNHG1-223	ENST00000545440	RNF17	Q9BXT8	1623 aa	Known RBP	12.08	□□□□□ -0.48
SNHG1-223	ENST00000545440	ZC3H13	Q5T200	1668 aa	Known RBP	12.07	□□□□□ -0.48
SNHG1-223	ENST00000545440	DNMT1	P26358	1616 aa	Known RBP	12.07	□□□□□ -0.48
SNHG1-223	ENST00000545440	KANK4	Q5T7N3	995 aa	Predicted RBP	12.06	□□□□□ -0.48
SNHG1-223	ENST00000545440	RSPH4A	Q5TD94	716 aa		12.06	□□□□□ -0.48
SNHG1-223	ENST00000545440	STK24	Q9Y6E0	443 aa		12.06	□□□□□ -0.48
SNHG1-223	ENST00000545440	MYO3A	Q8NEV4	1616 aa		12.06	□□□□□ -0.48
SNHG1-223	ENST00000545440	SGIP1	Q9BQI5	828 aa		12.05	□□□□□ -0.48
SNHG1-223	ENST00000545440	SHANK2	Q9UPX8	1470 aa		12.05	□□□□□ -0.48
SNHG1-223	ENST00000545440	STRC	Q7RTU9	1775 aa		12.05	□□□□□ -0.48
SNHG1-223	ENST00000545440	NPAT	Q14207	1427 aa		12.03	□□□□□ -0.48
SNHG1-223	ENST00000545440	UHRF1BP1	Q6BDS2	1440 aa		12.03	□□□□□ -0.48
SNHG1-223	ENST00000545440	TCOF1	Q13428	1488 aa	Known RBP	12.03	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms