RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 MYBBP1AQ9BQG0 1328 aaKnown RBP16.09■□□□□ 0.17
CHD4-211ENST00000544484 PLIN1O60240 522 aa16.09■□□□□ 0.17
CHD4-211ENST00000544484 GORABQ5T7V8 394 aa16.09■□□□□ 0.17
CHD4-211ENST00000544484 MINK1Q8N4C8 1332 aaPredicted RBP16.08■□□□□ 0.16
CHD4-211ENST00000544484 PDE3BQ13370 1112 aa16.07■□□□□ 0.16
CHD4-211ENST00000544484 DRC7Q8IY82 874 aa16.07■□□□□ 0.16
CHD4-211ENST00000544484 NOL8Q76FK4 1167 aaKnown RBP16.07■□□□□ 0.16
CHD4-211ENST00000544484 PRKRIP1Q9H875 184 aaPredicted RBP16.07■□□□□ 0.16
CHD4-211ENST00000544484 NRDCO43847 1150 aa16.07■□□□□ 0.16
CHD4-211ENST00000544484 TAF7LQ5H9L4 462 aa16.07■□□□□ 0.16
CHD4-211ENST00000544484 FOXD4L1Q9NU39 408 aa16.07■□□□□ 0.16
CHD4-211ENST00000544484 ZNF644Q9H582 1327 aaPredicted RBP16.06■□□□□ 0.16
CHD4-211ENST00000544484 TSHZ2Q9NRE2 1034 aa16.06■□□□□ 0.16
CHD4-211ENST00000544484 HMMRO75330 724 aa16.06■□□□□ 0.16
CHD4-211ENST00000544484 USP47Q96K76 1375 aa16.06■□□□□ 0.16
CHD4-211ENST00000544484 LMOD3Q0VAK6 560 aa16.05■□□□□ 0.16
CHD4-211ENST00000544484 VGFO15240 615 aaPredicted RBP16.05■□□□□ 0.16
CHD4-211ENST00000544484 RAD54L2Q9Y4B4 1467 aa16.05■□□□□ 0.16
CHD4-211ENST00000544484 L1TD1Q5T7N2 865 aaKnown RBP16.04■□□□□ 0.16
CHD4-211ENST00000544484 GBP4Q96PP9 640 aa16.04■□□□□ 0.16
CHD4-211ENST00000544484 IGF1RP08069 1367 aa16.04■□□□□ 0.16
CHD4-211ENST00000544484 MSNP26038 577 aaKnown RBP16.03■□□□□ 0.16
CHD4-211ENST00000544484 PHLDB1Q86UU1 1377 aa16.03■□□□□ 0.16
CHD4-211ENST00000544484 CHMP4AQ9BY43 222 aa16.03■□□□□ 0.16
CHD4-211ENST00000544484 FGD5Q6ZNL6 1462 aa16.02■□□□□ 0.16
CHD4-211ENST00000544484 CLSTN1O94985 981 aa16.02■□□□□ 0.16
CHD4-211ENST00000544484 COG3Q96JB2 828 aa16.02■□□□□ 0.16
CHD4-211ENST00000544484 EVC2Q86UK5 1308 aa16.01■□□□□ 0.15
CHD4-211ENST00000544484 APAF1O14727 1248 aa16.01■□□□□ 0.15
CHD4-211ENST00000544484 CGNL1Q0VF96 1302 aa16.01■□□□□ 0.15
CHD4-211ENST00000544484 GAPVD1Q14C86 1478 aa16■□□□□ 0.15
CHD4-211ENST00000544484 GPATCH3Q96I76 525 aa16■□□□□ 0.15
CHD4-211ENST00000544484 EXOC6Q8TAG9 804 aa15.99■□□□□ 0.15
CHD4-211ENST00000544484 HSP90B1P14625 803 aaKnown RBP15.98■□□□□ 0.15
CHD4-211ENST00000544484 OSCARQ8IYS5 282 aa15.98■□□□□ 0.15
CHD4-211ENST00000544484 IPO9Q96P70 1041 aaKnown RBP15.98■□□□□ 0.15
CHD4-211ENST00000544484 UACAQ9BZF9 1416 aa15.98■□□□□ 0.15
CHD4-211ENST00000544484 COG6Q9Y2V7 657 aa15.98■□□□□ 0.15
CHD4-211ENST00000544484 CHAF1AQ13111 956 aaPredicted RBP15.97■□□□□ 0.15
CHD4-211ENST00000544484 AMER1Q5JTC6 1135 aaPredicted RBP15.97■□□□□ 0.15
CHD4-211ENST00000544484 HDAC5Q9UQL6 1122 aa15.97■□□□□ 0.15
CHD4-211ENST00000544484 CRBNQ96SW2 442 aa15.96■□□□□ 0.15
CHD4-211ENST00000544484 FOXD4L5Q5VV16 416 aaPredicted RBP15.96■□□□□ 0.15
CHD4-211ENST00000544484 FOXD4L4Q8WXT5 416 aaPredicted RBP15.96■□□□□ 0.15
CHD4-211ENST00000544484 ANKRD45Q5TZF3 282 aa15.96■□□□□ 0.15
CHD4-211ENST00000544484 NGEFQ8N5V2 710 aa15.95■□□□□ 0.14
CHD4-211ENST00000544484 GTF2E1P29083 439 aaPredicted RBP15.95■□□□□ 0.14
CHD4-211ENST00000544484 E9PSI1 815 aa15.95■□□□□ 0.14
CHD4-211ENST00000544484 NECTIN2Q92692 538 aa15.95■□□□□ 0.14
CHD4-211ENST00000544484 RRP1P56182 461 aaKnown RBP15.94■□□□□ 0.14
CHD4-211ENST00000544484 RILPL2Q969X0 211 aa15.94■□□□□ 0.14
CHD4-211ENST00000544484 AQRO60306 1485 aaKnown RBP eCLIP15.94■□□□□ 0.144e-7■■■■□ 24.4
CHD4-211ENST00000544484 SLC4A3P48751 1232 aa15.94■□□□□ 0.14
CHD4-211ENST00000544484 ZKSCAN2Q63HK3 967 aa15.94■□□□□ 0.14
CHD4-211ENST00000544484 TOMM22Q9NS69 142 aa15.94■□□□□ 0.14
CHD4-211ENST00000544484 EIF2S2P20042 333 aaKnown RBP15.93■□□□□ 0.14
CHD4-211ENST00000544484 MYOM3Q5VTT5 1437 aa15.93■□□□□ 0.14
CHD4-211ENST00000544484 TEFQ10587 303 aa15.93■□□□□ 0.14
CHD4-211ENST00000544484 C1orf141Q5JVX7 400 aa15.93■□□□□ 0.14
CHD4-211ENST00000544484 FRAT2O75474 233 aaPredicted RBP15.92■□□□□ 0.14
CHD4-211ENST00000544484 TMX4Q9H1E5 349 aaPredicted RBP15.92■□□□□ 0.14
CHD4-211ENST00000544484 NCBP3Q53F19 620 aaKnown RBP15.92■□□□□ 0.14
CHD4-211ENST00000544484 FGD6Q6ZV73 1430 aa15.92■□□□□ 0.14
CHD4-211ENST00000544484 ZBED9Q6R2W3 1325 aa15.92■□□□□ 0.14
CHD4-211ENST00000544484 FAM69CQ0P6D2 419 aa15.91■□□□□ 0.14
CHD4-211ENST00000544484 DIAPH1O60610 1272 aaKnown RBP15.91■□□□□ 0.14
CHD4-211ENST00000544484 CENPQQ7L2Z9 268 aaPredicted RBP15.9■□□□□ 0.14
CHD4-211ENST00000544484 HTATSF1O43719 755 aaKnown RBP15.9■□□□□ 0.14
CHD4-211ENST00000544484 RIPK4P57078 832 aa15.9■□□□□ 0.14
CHD4-211ENST00000544484 PDE4AP27815 886 aa15.89■□□□□ 0.13
CHD4-211ENST00000544484 EVA1CP58658 441 aa15.89■□□□□ 0.13
CHD4-211ENST00000544484 TMEM132EQ6IEE7 984 aa15.89■□□□□ 0.13
CHD4-211ENST00000544484 G3V3G9 751 aa15.88■□□□□ 0.13
CHD4-211ENST00000544484 PTMSP20962 102 aa15.88■□□□□ 0.13
CHD4-211ENST00000544484 DCAF8Q5TAQ9 597 aa15.88■□□□□ 0.13
CHD4-211ENST00000544484 SYAP1Q96A49 352 aaPredicted RBP15.88■□□□□ 0.13
CHD4-211ENST00000544484 KIF7Q2M1P5 1343 aa15.88■□□□□ 0.13
CHD4-211ENST00000544484 ST18O60284 1047 aa15.88■□□□□ 0.13
CHD4-211ENST00000544484 FOXD4L6Q3SYB3 417 aaPredicted RBP15.87■□□□□ 0.13
CHD4-211ENST00000544484 FOXD4L3Q6VB84 417 aaPredicted RBP15.87■□□□□ 0.13
CHD4-211ENST00000544484 KIAA2012Q0VF49 1180 aa15.87■□□□□ 0.13
CHD4-211ENST00000544484 GOLGA6L3A6NEY3 463 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 HMOX1P09601 288 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 GGNBP2Q9H3C7 697 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 PSME1Q06323 249 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 AFAP1Q8N556 730 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 ARID3AQ99856 593 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 FAM161AQ3B820 660 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 PRDM2Q13029 1718 aa15.86■□□□□ 0.13
CHD4-211ENST00000544484 KIF16BQ96L93 1317 aa15.85■□□□□ 0.13
CHD4-211ENST00000544484 CABP2Q9NPB3 220 aa15.85■□□□□ 0.13
CHD4-211ENST00000544484 KIF21BO75037 1637 aa15.84■□□□□ 0.13
CHD4-211ENST00000544484 TTC5Q8N0Z6 440 aa15.84■□□□□ 0.13
CHD4-211ENST00000544484 RASSF8Q8NHQ8 419 aa15.84■□□□□ 0.13
CHD4-211ENST00000544484 CCDC7Q96M83 1385 aa15.84■□□□□ 0.13
CHD4-211ENST00000544484 NUTM2GQ5VZR2 741 aa15.84■□□□□ 0.13
CHD4-211ENST00000544484 C9orf78Q9NZ63 289 aaPredicted RBP15.84■□□□□ 0.13
CHD4-211ENST00000544484 ANKRD50Q9ULJ7 1429 aa15.83■□□□□ 0.13
CHD4-211ENST00000544484 CREBRFQ8IUR6 639 aa15.83■□□□□ 0.12
CHD4-211ENST00000544484 LRRC9Q6ZRR7 1453 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms