RNA–Protein interactions for RNA: ENST00000542685.5

XRCC4-206, Transcript of X-ray repair cross complementing 4, humanhuman

TSL 1 (best)

Gene XRCC4, Length 1,243 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC4-206ENST00000542685 HRO43593 1189 aa12.94□□□□□ -0.34
XRCC4-206ENST00000542685 NBR1Q14596 966 aa12.93□□□□□ -0.34
XRCC4-206ENST00000542685 STAC3Q96MF2 364 aa12.93□□□□□ -0.34
XRCC4-206ENST00000542685 ZBED2Q9BTP6 218 aa12.93□□□□□ -0.34
XRCC4-206ENST00000542685 COL9A1P20849 921 aa12.91□□□□□ -0.34
XRCC4-206ENST00000542685 HAP1P54257 671 aaPredicted RBP12.91□□□□□ -0.34
XRCC4-206ENST00000542685 GRXCR2A6NFK2 248 aa12.9□□□□□ -0.34
XRCC4-206ENST00000542685 KCNV2Q8TDN2 545 aa12.9□□□□□ -0.34
XRCC4-206ENST00000542685 SLC4A5Q9BY07 1137 aa12.9□□□□□ -0.34
XRCC4-206ENST00000542685 PPP1R3GB7ZBB8 358 aa12.89□□□□□ -0.35
XRCC4-206ENST00000542685 C6orf132Q5T0Z8 1188 aa12.89□□□□□ -0.35
XRCC4-206ENST00000542685 MAP3K7O43318 606 aa12.87□□□□□ -0.35
XRCC4-206ENST00000542685 PROX2Q3B8N5 592 aa12.86□□□□□ -0.35
XRCC4-206ENST00000542685 ARHGEF1Q92888 912 aaKnown RBP12.86□□□□□ -0.35
XRCC4-206ENST00000542685 EN1Q05925 392 aaPredicted RBP12.85□□□□□ -0.35
XRCC4-206ENST00000542685 TSR1Q2NL82 804 aaKnown RBP12.84□□□□□ -0.35
XRCC4-206ENST00000542685 BHMG1C9JSJ3 638 aaPredicted RBP12.82□□□□□ -0.36
XRCC4-206ENST00000542685 KCTD12Q96CX2 325 aaKnown RBP12.82□□□□□ -0.36
XRCC4-206ENST00000542685 PRIM1P49642 420 aaKnown RBP12.81□□□□□ -0.36
XRCC4-206ENST00000542685 P3H3Q8IVL6 736 aa12.81□□□□□ -0.36
XRCC4-206ENST00000542685 MRPL50Q8N5N7 158 aaKnown RBP12.8□□□□□ -0.36
XRCC4-206ENST00000542685 OSBPP22059 807 aa12.79□□□□□ -0.36
XRCC4-206ENST00000542685 NBPF3Q9H094 633 aa12.79□□□□□ -0.36
XRCC4-206ENST00000542685 GOLGA8CPA6NN73 597 aa12.78□□□□□ -0.36
XRCC4-206ENST00000542685 RABGEF1Q9UJ41 708 aa12.78□□□□□ -0.36
XRCC4-206ENST00000542685 KIAA1468Q9P260 1216 aa12.77□□□□□ -0.37
XRCC4-206ENST00000542685 MLLT3P42568 568 aaPredicted RBP12.76□□□□□ -0.37
XRCC4-206ENST00000542685 HCSTQ9UBK5 93 aa12.75□□□□□ -0.37
XRCC4-206ENST00000542685 TRIM6-TRIM34B2RNG4 842 aa12.74□□□□□ -0.37
XRCC4-206ENST00000542685 CDHR5Q9HBB8 845 aa12.73□□□□□ -0.37
XRCC4-206ENST00000542685 WNT2BQ93097 391 aa12.72□□□□□ -0.37
XRCC4-206ENST00000542685 KDM2AQ9Y2K7 1162 aa12.72□□□□□ -0.37
XRCC4-206ENST00000542685 ONECUT3O60422 494 aaPredicted RBP12.7□□□□□ -0.38
XRCC4-206ENST00000542685 PTPN5P54829 565 aa12.7□□□□□ -0.38
XRCC4-206ENST00000542685 SEPT9Q9UHD8 586 aaPredicted RBP12.7□□□□□ -0.38
XRCC4-206ENST00000542685 SEMA3EO15041 775 aa12.69□□□□□ -0.38
XRCC4-206ENST00000542685 CERKQ8TCT0 537 aa12.69□□□□□ -0.38
XRCC4-206ENST00000542685 TSKSQ9UJT2 592 aa12.69□□□□□ -0.38
XRCC4-206ENST00000542685 CDCA7LQ96GN5 454 aa12.68□□□□□ -0.38
XRCC4-206ENST00000542685 PRSS12P56730 875 aa12.67□□□□□ -0.38
XRCC4-206ENST00000542685 THSD4Q6ZMP0 1018 aa12.67□□□□□ -0.38
XRCC4-206ENST00000542685 PACS2Q86VP3 889 aa12.67□□□□□ -0.38
XRCC4-206ENST00000542685 LAPTM4BQ86VI4 370 aa12.66□□□□□ -0.38
XRCC4-206ENST00000542685 ANKK1Q8NFD2 765 aa12.64□□□□□ -0.39
XRCC4-206ENST00000542685 ZFRQ96KR1 1074 aaKnown RBP12.63□□□□□ -0.39
XRCC4-206ENST00000542685 FAM198AQ9UFP1 575 aa12.63□□□□□ -0.39
XRCC4-206ENST00000542685 FAM98CQ17RN3 349 aaKnown RBP12.62□□□□□ -0.39
XRCC4-206ENST00000542685 VSIG10Q8N0Z9 540 aa12.62□□□□□ -0.39
XRCC4-206ENST00000542685 NPDC1Q9NQX5 325 aaPredicted RBP12.62□□□□□ -0.39
XRCC4-206ENST00000542685 SMAPO00193 183 aa12.6□□□□□ -0.39
XRCC4-206ENST00000542685 BCAMP50895 628 aa12.6□□□□□ -0.39
XRCC4-206ENST00000542685 NUTM2FA1L443 756 aa12.58□□□□□ -0.4
XRCC4-206ENST00000542685 C3orf80F5H4A9 247 aa12.58□□□□□ -0.4
XRCC4-206ENST00000542685 PNMA3Q9UL41 463 aa12.58□□□□□ -0.4
XRCC4-206ENST00000542685 NBPF26B4DH59 902 aa12.57□□□□□ -0.4
XRCC4-206ENST00000542685 PADI6Q6TGC4 694 aa12.57□□□□□ -0.4
XRCC4-206ENST00000542685 TATDN2Q93075 761 aa12.57□□□□□ -0.4
XRCC4-206ENST00000542685 PLA2G2EQ9NZK7 142 aa12.57□□□□□ -0.4
XRCC4-206ENST00000542685 RBM27Q9P2N5 1060 aaKnown RBP12.57□□□□□ -0.4
XRCC4-206ENST00000542685 TESPA1A2RU30 521 aaPredicted RBP12.56□□□□□ -0.4
XRCC4-206ENST00000542685 SOWAHBA6NEL2 793 aa12.56□□□□□ -0.4
XRCC4-206ENST00000542685 NUDT18Q6ZVK8 323 aa12.55□□□□□ -0.4
XRCC4-206ENST00000542685 PTGDRQ13258 359 aa12.54□□□□□ -0.4
XRCC4-206ENST00000542685 LRCH3Q96II8 777 aa12.53□□□□□ -0.4
XRCC4-206ENST00000542685 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.53□□□□□ -0.4
XRCC4-206ENST00000542685 TTC13Q8NBP0 860 aa12.52□□□□□ -0.41
XRCC4-206ENST00000542685 SMYD5Q6GMV2 418 aa12.51□□□□□ -0.41
XRCC4-206ENST00000542685 RBM26Q5T8P6 1007 aaKnown RBP12.5□□□□□ -0.41
XRCC4-206ENST00000542685 WBP1LQ9NX94 342 aa12.5□□□□□ -0.41
XRCC4-206ENST00000542685 SAMD7Q7Z3H4 446 aa12.49□□□□□ -0.41
XRCC4-206ENST00000542685 HPS5Q9UPZ3 1129 aa12.48□□□□□ -0.41
XRCC4-206ENST00000542685 TSR3Q9UJK0 312 aaKnown RBP12.47□□□□□ -0.41
XRCC4-206ENST00000542685 FCHSD2O94868 740 aa12.46□□□□□ -0.41
XRCC4-206ENST00000542685 HDGFP51858 240 aaKnown RBP12.45□□□□□ -0.42
XRCC4-206ENST00000542685 RNF40O75150 1001 aa12.43□□□□□ -0.42
XRCC4-206ENST00000542685 PPP4CP60510 307 aa12.43□□□□□ -0.42
XRCC4-206ENST00000542685 FAM161AQ3B820 660 aa12.43□□□□□ -0.42
XRCC4-206ENST00000542685 NYAP1Q6ZVC0 841 aa12.42□□□□□ -0.42
XRCC4-206ENST00000542685 EYA1Q99502 592 aa12.42□□□□□ -0.42
XRCC4-206ENST00000542685 SWT1Q5T5J6 900 aaKnown RBP12.39□□□□□ -0.43
XRCC4-206ENST00000542685 ADGRG1Q9Y653 693 aa12.39□□□□□ -0.43
XRCC4-206ENST00000542685 HIC1Q14526 733 aa12.38□□□□□ -0.43
XRCC4-206ENST00000542685 RBM46Q8TBY0 533 aaKnown RBP12.38□□□□□ -0.43
XRCC4-206ENST00000542685 FECHP22830 423 aa12.35□□□□□ -0.43
XRCC4-206ENST00000542685 GPIHBP1Q8IV16 184 aa12.35□□□□□ -0.43
XRCC4-206ENST00000542685 GNPATO15228 680 aa12.34□□□□□ -0.43
XRCC4-206ENST00000542685 DNAJB2P25686 324 aa12.34□□□□□ -0.43
XRCC4-206ENST00000542685 TULP1O00294 542 aaPredicted RBP12.33□□□□□ -0.44
XRCC4-206ENST00000542685 GPR37O15354 613 aa12.33□□□□□ -0.44
XRCC4-206ENST00000542685 SLF2Q8IX21 1173 aa12.33□□□□□ -0.44
XRCC4-206ENST00000542685 RCCD1A6NED2 376 aa12.32□□□□□ -0.44
XRCC4-206ENST00000542685 SLC4A3P48751 1232 aa12.32□□□□□ -0.44
XRCC4-206ENST00000542685 ITGBL1O95965 494 aaPredicted RBP12.31□□□□□ -0.44
XRCC4-206ENST00000542685 IFFO2Q5TF58 517 aa12.31□□□□□ -0.44
XRCC4-206ENST00000542685 OATP04181 439 aa12.29□□□□□ -0.44
XRCC4-206ENST00000542685 KCNC4Q03721 635 aa12.29□□□□□ -0.44
XRCC4-206ENST00000542685 TMEM134Q9H6X4 195 aa12.29□□□□□ -0.44
XRCC4-206ENST00000542685 APLP1P51693 650 aa12.28□□□□□ -0.44
XRCC4-206ENST00000542685 PXYLP1Q8TE99 480 aa12.28□□□□□ -0.44
XRCC4-206ENST00000542685 NECTIN2Q92692 538 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms