RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 NEO1Q92859 1461 aa20.15■□□□□ 0.82
SFSWAP-210ENST00000541286 FRMPD1Q5SYB0 1578 aa20.14■□□□□ 0.82
SFSWAP-210ENST00000541286 ROCK1Q13464 1354 aa20.14■□□□□ 0.81
SFSWAP-210ENST00000541286 RBM19Q9Y4C8 960 aaKnown RBP20.14■□□□□ 0.81
SFSWAP-210ENST00000541286 ARID4BQ4LE39 1312 aaPredicted RBP20.12■□□□□ 0.81
SFSWAP-210ENST00000541286 PKD2Q13563 968 aa20.12■□□□□ 0.81
SFSWAP-210ENST00000541286 ADGRL2O95490 1459 aa20.11■□□□□ 0.81
SFSWAP-210ENST00000541286 RICTORQ6R327 1708 aa20.1■□□□□ 0.81
SFSWAP-210ENST00000541286 ADGBQ8N7X0 1667 aa20.1■□□□□ 0.81
SFSWAP-210ENST00000541286 SHANK2Q9UPX8 1470 aa20.09■□□□□ 0.81
SFSWAP-210ENST00000541286 TEX14Q8IWB6 1497 aa20.09■□□□□ 0.81
SFSWAP-210ENST00000541286 ABCA6Q8N139 1617 aa20.09■□□□□ 0.81
SFSWAP-210ENST00000541286 GCC2Q8IWJ2 1684 aa20.08■□□□□ 0.81
SFSWAP-210ENST00000541286 CFAP65Q6ZU64 1925 aaKnown RBP20.08■□□□□ 0.81
SFSWAP-210ENST00000541286 SIGLEC1Q9BZZ2 1709 aa20.06■□□□□ 0.8
SFSWAP-210ENST00000541286 INO80Q9ULG1 1556 aaPredicted RBP20.06■□□□□ 0.8
SFSWAP-210ENST00000541286 KDM5CP41229 1560 aa20.04■□□□□ 0.8
SFSWAP-210ENST00000541286 HECW2Q9P2P5 1572 aa20.04■□□□□ 0.8
SFSWAP-210ENST00000541286 PZPP20742 1482 aa20.03■□□□□ 0.8
SFSWAP-210ENST00000541286 A2MP01023 1474 aa20.03■□□□□ 0.8
SFSWAP-210ENST00000541286 DHX29Q7Z478 1369 aaKnown RBP20.03■□□□□ 0.8
SFSWAP-210ENST00000541286 CFAP74Q9C0B2 1584 aa20.03■□□□□ 0.8
SFSWAP-210ENST00000541286 DIP2CQ9Y2E4 1556 aa20.01■□□□□ 0.79
SFSWAP-210ENST00000541286 MSH5O43196 834 aa20■□□□□ 0.79
SFSWAP-210ENST00000541286 MLH3Q9UHC1 1453 aa20■□□□□ 0.79
SFSWAP-210ENST00000541286 MAST1Q9Y2H9 1570 aa19.99■□□□□ 0.79
SFSWAP-210ENST00000541286 RTEL1-TNFRSF6BF6WH68 1400 aa19.99■□□□□ 0.79
SFSWAP-210ENST00000541286 PRKCSHP14314 528 aaPredicted RBP19.99■□□□□ 0.79
SFSWAP-210ENST00000541286 DUOX2Q9NRD8 1548 aa19.99■□□□□ 0.79
SFSWAP-210ENST00000541286 IRX6P78412 446 aaPredicted RBP19.98■□□□□ 0.79
SFSWAP-210ENST00000541286 CEBPAP49715 358 aaPredicted RBP19.98■□□□□ 0.79
SFSWAP-210ENST00000541286 RGL3Q3MIN7 710 aa19.98■□□□□ 0.79
SFSWAP-210ENST00000541286 WASHC2CQ9Y4E1 1318 aa19.98■□□□□ 0.79
SFSWAP-210ENST00000541286 PLXNC1O60486 1568 aa19.97■□□□□ 0.79
SFSWAP-210ENST00000541286 FBXO31Q5XUX0 539 aaPredicted RBP19.97■□□□□ 0.79
SFSWAP-210ENST00000541286 ANP32CO43423 234 aa19.97■□□□□ 0.79
SFSWAP-210ENST00000541286 ZNF326Q5BKZ1 582 aaKnown RBP19.94■□□□□ 0.78
SFSWAP-210ENST00000541286 NEFLP07196 543 aa19.93■□□□□ 0.78
SFSWAP-210ENST00000541286 TONSLQ96HA7 1378 aa19.93■□□□□ 0.78
SFSWAP-210ENST00000541286 FAM135AQ9P2D6 1515 aa19.93■□□□□ 0.78
SFSWAP-210ENST00000541286 ERICH6Q7L0X2 663 aa19.93■□□□□ 0.78
SFSWAP-210ENST00000541286 PPP1R15AO75807 674 aaPredicted RBP19.92■□□□□ 0.78
SFSWAP-210ENST00000541286 ERBINQ96RT1 1412 aa19.92■□□□□ 0.78
SFSWAP-210ENST00000541286 NUTM2DQ5VT03 806 aaPredicted RBP19.91■□□□□ 0.78
SFSWAP-210ENST00000541286 KDM2AQ9Y2K7 1162 aa19.91■□□□□ 0.78
SFSWAP-210ENST00000541286 ATP10AO60312 1499 aa19.9■□□□□ 0.78
SFSWAP-210ENST00000541286 CHGAP10645 457 aaKnown RBP19.89■□□□□ 0.78
SFSWAP-210ENST00000541286 UGGT1Q9NYU2 1555 aa19.88■□□□□ 0.77
SFSWAP-210ENST00000541286 MROH1Q8NDA8 1641 aa19.88■□□□□ 0.77
SFSWAP-210ENST00000541286 CNGB1Q14028 1251 aaPredicted RBP19.88■□□□□ 0.77
SFSWAP-210ENST00000541286 ANKRD30BQ9BXX2 1392 aa19.87■□□□□ 0.77
SFSWAP-210ENST00000541286 CEP152O94986 1710 aa19.86■□□□□ 0.77
SFSWAP-210ENST00000541286 ZMYM4Q5VZL5 1548 aa19.85■□□□□ 0.77
SFSWAP-210ENST00000541286 L3MBTL2Q969R5 705 aa19.85■□□□□ 0.77
SFSWAP-210ENST00000541286 PLA2R1Q13018 1463 aa19.84■□□□□ 0.77
SFSWAP-210ENST00000541286 ARHGEF40Q8TER5 1519 aa19.81■□□□□ 0.76
SFSWAP-210ENST00000541286 KANK1Q14678 1352 aa19.81■□□□□ 0.76
SFSWAP-210ENST00000541286 UNC13BO14795 1591 aa19.8■□□□□ 0.76
SFSWAP-210ENST00000541286 ESF1Q9H501 851 aaKnown RBP19.79■□□□□ 0.76
SFSWAP-210ENST00000541286 NPATQ14207 1427 aa19.79■□□□□ 0.76
SFSWAP-210ENST00000541286 E9PCH4 1651 aa19.78■□□□□ 0.76
SFSWAP-210ENST00000541286 HNRNPUQ00839 825 aaKnown RBP eCLIP19.77■□□□□ 0.76
SFSWAP-210ENST00000541286 MAGI2Q86UL8 1455 aa19.77■□□□□ 0.75
SFSWAP-210ENST00000541286 PRDM15P57071 1507 aaPredicted RBP19.77■□□□□ 0.75
SFSWAP-210ENST00000541286 DCAF11Q8TEB1 546 aa19.76■□□□□ 0.75
SFSWAP-210ENST00000541286 IQGAP3Q86VI3 1631 aa19.75■□□□□ 0.75
SFSWAP-210ENST00000541286 ABCC3O15438 1527 aa19.75■□□□□ 0.75
SFSWAP-210ENST00000541286 NBPF8Q3BBV2 869 aa19.74■□□□□ 0.75
SFSWAP-210ENST00000541286 NBR1Q14596 966 aa19.74■□□□□ 0.75
SFSWAP-210ENST00000541286 DEPDC5O75140 1603 aa19.74■□□□□ 0.75
SFSWAP-210ENST00000541286 TIMELESSQ9UNS1 1208 aa19.73■□□□□ 0.75
SFSWAP-210ENST00000541286 IDI1Q13907 227 aa19.72■□□□□ 0.75
SFSWAP-210ENST00000541286 CLTCQ00610 1675 aaKnown RBP19.72■□□□□ 0.75
SFSWAP-210ENST00000541286 CCDC144AA2RUR9 1427 aa19.71■□□□□ 0.75
SFSWAP-210ENST00000541286 KDM5DQ9BY66 1539 aa19.71■□□□□ 0.75
SFSWAP-210ENST00000541286 ANO8Q9HCE9 1232 aaPredicted RBP19.7■□□□□ 0.74
SFSWAP-210ENST00000541286 POLR3GLQ9BT43 218 aa19.7■□□□□ 0.74
SFSWAP-210ENST00000541286 ZMYM3Q14202 1370 aa19.7■□□□□ 0.74
SFSWAP-210ENST00000541286 RNF17Q9BXT8 1623 aaKnown RBP19.69■□□□□ 0.74
SFSWAP-210ENST00000541286 EIF2AK4Q9P2K8 1649 aaKnown RBP19.69■□□□□ 0.74
SFSWAP-210ENST00000541286 VWDEQ8N2E2 1590 aa19.68■□□□□ 0.74
SFSWAP-210ENST00000541286 DEKP35659 375 aaKnown RBP19.68■□□□□ 0.74
SFSWAP-210ENST00000541286 CCER2I3L3R5 266 aa19.66■□□□□ 0.74
SFSWAP-210ENST00000541286 RPRD2Q5VT52 1461 aaKnown RBP19.66■□□□□ 0.74
SFSWAP-210ENST00000541286 EFCAB6Q5THR3 1501 aa19.66■□□□□ 0.74
SFSWAP-210ENST00000541286 HSPA5P11021 654 aaKnown RBP19.65■□□□□ 0.74
SFSWAP-210ENST00000541286 CAMSAP1Q5T5Y3 1602 aa19.64■□□□□ 0.73
SFSWAP-210ENST00000541286 SENP3-EIF4A1A0A087X0R7 540 aa19.64■□□□□ 0.73
SFSWAP-210ENST00000541286 TET3O43151 1660 aa19.64■□□□□ 0.73
SFSWAP-210ENST00000541286 FAM9BQ8IZU0 186 aa19.64■□□□□ 0.73
SFSWAP-210ENST00000541286 CLTCL1P53675 1640 aa19.63■□□□□ 0.73
SFSWAP-210ENST00000541286 STAG3Q9UJ98 1225 aa19.63■□□□□ 0.73
SFSWAP-210ENST00000541286 NBPF1Q3BBV0 1214 aa19.63■□□□□ 0.73
SFSWAP-210ENST00000541286 AGLP35573 1532 aa19.6■□□□□ 0.73
SFSWAP-210ENST00000541286 MADDQ8WXG6 1647 aa19.59■□□□□ 0.73
SFSWAP-210ENST00000541286 CCDC136Q96JN2 1154 aa19.59■□□□□ 0.73
SFSWAP-210ENST00000541286 ADGRF5Q8IZF2 1346 aa19.59■□□□□ 0.73
SFSWAP-210ENST00000541286 SYNMO15061 1565 aa19.59■□□□□ 0.73
SFSWAP-210ENST00000541286 SPHKAPQ2M3C7 1700 aa19.58■□□□□ 0.73
SFSWAP-210ENST00000541286 RTN4Q9NQC3 1192 aaKnown RBP19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms