RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 COL9A1P20849 921 aa10.15□□□□□ -0.78
VPS13A-213ENST00000539950 EPAS1Q99814 870 aa10.15□□□□□ -0.78
VPS13A-213ENST00000539950 RBM33Q96EV2 1170 aaKnown RBP10.14□□□□□ -0.79
VPS13A-213ENST00000539950 PPP1R3GB7ZBB8 358 aa10.13□□□□□ -0.79
VPS13A-213ENST00000539950 PLCB2Q00722 1185 aa10.13□□□□□ -0.79
VPS13A-213ENST00000539950 BHMG1C9JSJ3 638 aaPredicted RBP10.12□□□□□ -0.79
VPS13A-213ENST00000539950 NBR1Q14596 966 aa10.12□□□□□ -0.79
VPS13A-213ENST00000539950 C6orf132Q5T0Z8 1188 aa10.12□□□□□ -0.79
VPS13A-213ENST00000539950 STAC3Q96MF2 364 aa10.11□□□□□ -0.79
VPS13A-213ENST00000539950 PROX2Q3B8N5 592 aa10.1□□□□□ -0.79
VPS13A-213ENST00000539950 PRIM1P49642 420 aaKnown RBP10.09□□□□□ -0.79
VPS13A-213ENST00000539950 EN1Q05925 392 aaPredicted RBP10.09□□□□□ -0.79
VPS13A-213ENST00000539950 GRXCR2A6NFK2 248 aa10.08□□□□□ -0.8
VPS13A-213ENST00000539950 TSR1Q2NL82 804 aaKnown RBP10.08□□□□□ -0.8
VPS13A-213ENST00000539950 KCNV2Q8TDN2 545 aa10.08□□□□□ -0.8
VPS13A-213ENST00000539950 KCTD12Q96CX2 325 aaKnown RBP10.08□□□□□ -0.8
VPS13A-213ENST00000539950 MAP3K7O43318 606 aa10.06□□□□□ -0.8
VPS13A-213ENST00000539950 HCSTQ9UBK5 93 aa10.05□□□□□ -0.8
VPS13A-213ENST00000539950 RABGEF1Q9UJ41 708 aa10.05□□□□□ -0.8
VPS13A-213ENST00000539950 MRPL50Q8N5N7 158 aaKnown RBP10.04□□□□□ -0.8
VPS13A-213ENST00000539950 OSBPP22059 807 aa10.03□□□□□ -0.8
VPS13A-213ENST00000539950 ARHGEF1Q92888 912 aaKnown RBP10.03□□□□□ -0.8
VPS13A-213ENST00000539950 NBPF3Q9H094 633 aa10.03□□□□□ -0.8
VPS13A-213ENST00000539950 KIAA1468Q9P260 1216 aa10.02□□□□□ -0.81
VPS13A-213ENST00000539950 GOLGA8CPA6NN73 597 aa10□□□□□ -0.81
VPS13A-213ENST00000539950 TRIM6-TRIM34B2RNG4 842 aa10□□□□□ -0.81
VPS13A-213ENST00000539950 WNT2BQ93097 391 aa10□□□□□ -0.81
VPS13A-213ENST00000539950 PTPN5P54829 565 aa9.99□□□□□ -0.81
VPS13A-213ENST00000539950 CDHR5Q9HBB8 845 aa9.99□□□□□ -0.81
VPS13A-213ENST00000539950 ONECUT3O60422 494 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-213ENST00000539950 MLLT3P42568 568 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-213ENST00000539950 HAP1P54257 671 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-213ENST00000539950 THSD4Q6ZMP0 1018 aa9.98□□□□□ -0.81
VPS13A-213ENST00000539950 SEPT9Q9UHD8 586 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-213ENST00000539950 TSKSQ9UJT2 592 aa9.98□□□□□ -0.81
VPS13A-213ENST00000539950 P3H3Q8IVL6 736 aa9.96□□□□□ -0.82
VPS13A-213ENST00000539950 LAPTM4BQ86VI4 370 aa9.95□□□□□ -0.82
VPS13A-213ENST00000539950 CDCA7LQ96GN5 454 aa9.95□□□□□ -0.82
VPS13A-213ENST00000539950 PRSS12P56730 875 aa9.94□□□□□ -0.82
VPS13A-213ENST00000539950 FAM198AQ9UFP1 575 aa9.94□□□□□ -0.82
VPS13A-213ENST00000539950 CERKQ8TCT0 537 aa9.93□□□□□ -0.82
VPS13A-213ENST00000539950 ZFRQ96KR1 1074 aaKnown RBP9.93□□□□□ -0.82
VPS13A-213ENST00000539950 ANKK1Q8NFD2 765 aa9.92□□□□□ -0.82
VPS13A-213ENST00000539950 PLA2G2EQ9NZK7 142 aa9.92□□□□□ -0.82
VPS13A-213ENST00000539950 C3orf80F5H4A9 247 aa9.91□□□□□ -0.82
VPS13A-213ENST00000539950 SEMA3EO15041 775 aa9.91□□□□□ -0.82
VPS13A-213ENST00000539950 BCAMP50895 628 aa9.91□□□□□ -0.82
VPS13A-213ENST00000539950 FAM98CQ17RN3 349 aaKnown RBP9.91□□□□□ -0.82
VPS13A-213ENST00000539950 PACS2Q86VP3 889 aa9.91□□□□□ -0.82
VPS13A-213ENST00000539950 NPDC1Q9NQX5 325 aaPredicted RBP9.91□□□□□ -0.82
VPS13A-213ENST00000539950 KDM2AQ9Y2K7 1162 aa9.91□□□□□ -0.82
VPS13A-213ENST00000539950 SMAPO00193 183 aa9.89□□□□□ -0.83
VPS13A-213ENST00000539950 SOWAHBA6NEL2 793 aa9.88□□□□□ -0.83
VPS13A-213ENST00000539950 RBM27Q9P2N5 1060 aaKnown RBP9.86□□□□□ -0.83
VPS13A-213ENST00000539950 PADI6Q6TGC4 694 aa9.85□□□□□ -0.83
VPS13A-213ENST00000539950 TATDN2Q93075 761 aa9.85□□□□□ -0.83
VPS13A-213ENST00000539950 PNMA3Q9UL41 463 aa9.85□□□□□ -0.83
VPS13A-213ENST00000539950 NBPF26B4DH59 902 aa9.84□□□□□ -0.83
VPS13A-213ENST00000539950 NUDT18Q6ZVK8 323 aa9.84□□□□□ -0.83
VPS13A-213ENST00000539950 TTC13Q8NBP0 860 aa9.84□□□□□ -0.83
VPS13A-213ENST00000539950 PTGDRQ13258 359 aa9.83□□□□□ -0.84
VPS13A-213ENST00000539950 LRCH3Q96II8 777 aa9.83□□□□□ -0.84
VPS13A-213ENST00000539950 WBP1LQ9NX94 342 aa9.83□□□□□ -0.84
VPS13A-213ENST00000539950 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.83□□□□□ -0.84
VPS13A-213ENST00000539950 NUTM2FA1L443 756 aa9.81□□□□□ -0.84
VPS13A-213ENST00000539950 TESPA1A2RU30 521 aaPredicted RBP9.81□□□□□ -0.84
VPS13A-213ENST00000539950 SAMD7Q7Z3H4 446 aa9.81□□□□□ -0.84
VPS13A-213ENST00000539950 HPS5Q9UPZ3 1129 aa9.8□□□□□ -0.84
VPS13A-213ENST00000539950 TSR3Q9UJK0 312 aaKnown RBP9.79□□□□□ -0.84
VPS13A-213ENST00000539950 VSIG10Q8N0Z9 540 aa9.78□□□□□ -0.84
VPS13A-213ENST00000539950 RBM26Q5T8P6 1007 aaKnown RBP9.77□□□□□ -0.85
VPS13A-213ENST00000539950 EYA1Q99502 592 aa9.76□□□□□ -0.85
VPS13A-213ENST00000539950 NYAP1Q6ZVC0 841 aa9.75□□□□□ -0.85
VPS13A-213ENST00000539950 IFFO2Q5TF58 517 aa9.74□□□□□ -0.85
VPS13A-213ENST00000539950 FCHSD2O94868 740 aa9.73□□□□□ -0.85
VPS13A-213ENST00000539950 ITGBL1O95965 494 aaPredicted RBP9.73□□□□□ -0.85
VPS13A-213ENST00000539950 PPP4CP60510 307 aa9.73□□□□□ -0.85
VPS13A-213ENST00000539950 FAM161AQ3B820 660 aa9.73□□□□□ -0.85
VPS13A-213ENST00000539950 RNF40O75150 1001 aa9.72□□□□□ -0.85
VPS13A-213ENST00000539950 SWT1Q5T5J6 900 aaKnown RBP9.72□□□□□ -0.85
VPS13A-213ENST00000539950 SMYD5Q6GMV2 418 aa9.72□□□□□ -0.85
VPS13A-213ENST00000539950 ADGRG1Q9Y653 693 aa9.72□□□□□ -0.85
VPS13A-213ENST00000539950 HDGFP51858 240 aaKnown RBP9.71□□□□□ -0.86
VPS13A-213ENST00000539950 A0A0G2JS52 829 aa9.68□□□□□ -0.86
VPS13A-213ENST00000539950 GPR37O15354 613 aa9.68□□□□□ -0.86
VPS13A-213ENST00000539950 FECHP22830 423 aa9.67□□□□□ -0.86
VPS13A-213ENST00000539950 HIC1Q14526 733 aa9.67□□□□□ -0.86
VPS13A-213ENST00000539950 RBM46Q8TBY0 533 aaKnown RBP9.67□□□□□ -0.86
VPS13A-213ENST00000539950 APLP1P51693 650 aa9.66□□□□□ -0.86
VPS13A-213ENST00000539950 KCNC4Q03721 635 aa9.66□□□□□ -0.86
VPS13A-213ENST00000539950 DNAJB2P25686 324 aa9.65□□□□□ -0.86
VPS13A-213ENST00000539950 SLF2Q8IX21 1173 aa9.65□□□□□ -0.86
VPS13A-213ENST00000539950 RCCD1A6NED2 376 aa9.64□□□□□ -0.87
VPS13A-213ENST00000539950 TJAP1Q5JTD0 557 aa9.64□□□□□ -0.87
VPS13A-213ENST00000539950 TMEM134Q9H6X4 195 aa9.64□□□□□ -0.87
VPS13A-213ENST00000539950 GNPATO15228 680 aa9.63□□□□□ -0.87
VPS13A-213ENST00000539950 GPIHBP1Q8IV16 184 aa9.62□□□□□ -0.87
VPS13A-213ENST00000539950 PXYLP1Q8TE99 480 aa9.62□□□□□ -0.87
VPS13A-213ENST00000539950 MTRQ99707 1265 aa9.62□□□□□ -0.87
VPS13A-213ENST00000539950 OATP04181 439 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms