RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 MAST1Q9Y2H9 1570 aa18.01■□□□□ 0.47
LDLR-203ENST00000535915 ZBED9Q6R2W3 1325 aa18.01■□□□□ 0.47
LDLR-203ENST00000535915 UNC13BO14795 1591 aa17.99■□□□□ 0.47
LDLR-203ENST00000535915 ROCK2O75116 1388 aaKnown RBP17.97■□□□□ 0.47
LDLR-203ENST00000535915 CCDC144AA2RUR9 1427 aa17.97■□□□□ 0.47
LDLR-203ENST00000535915 PLXNC1O60486 1568 aa17.96■□□□□ 0.47
LDLR-203ENST00000535915 ST20-MTHFSA0A0A6YYL1 179 aa17.96■□□□□ 0.47
LDLR-203ENST00000535915 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.96■□□□□ 0.477e-10■■□□□ 13.2
LDLR-203ENST00000535915 PLEKHH2Q8IVE3 1493 aa17.96■□□□□ 0.46
LDLR-203ENST00000535915 TRPM1Q7Z4N2 1603 aa17.94■□□□□ 0.46
LDLR-203ENST00000535915 ZCCHC11Q5TAX3 1644 aaKnown RBP17.93■□□□□ 0.46
LDLR-203ENST00000535915 IQGAP3Q86VI3 1631 aa17.93■□□□□ 0.46
LDLR-203ENST00000535915 RGL3Q3MIN7 710 aa17.91■□□□□ 0.46
LDLR-203ENST00000535915 ERICH6BQ5W0A0 696 aa17.91■□□□□ 0.46
LDLR-203ENST00000535915 DUOX2Q9NRD8 1548 aa17.9■□□□□ 0.46
LDLR-203ENST00000535915 PRAG1Q86YV5 1406 aa17.9■□□□□ 0.46
LDLR-203ENST00000535915 E9PCH4 1651 aa17.9■□□□□ 0.46
LDLR-203ENST00000535915 PLA2R1Q13018 1463 aa17.89■□□□□ 0.45
LDLR-203ENST00000535915 RBM19Q9Y4C8 960 aaKnown RBP17.88■□□□□ 0.45
LDLR-203ENST00000535915 PLCH2O75038 1416 aa17.88■□□□□ 0.45
LDLR-203ENST00000535915 TMC1Q8TDI8 760 aa17.87■□□□□ 0.45
LDLR-203ENST00000535915 CLASP1Q7Z460 1538 aa17.87■□□□□ 0.45
LDLR-203ENST00000535915 A2MP01023 1474 aa17.86■□□□□ 0.45
LDLR-203ENST00000535915 EFCAB2Q5VUJ9 269 aa17.86■□□□□ 0.45
LDLR-203ENST00000535915 PPP4R2Q9NY27 417 aa17.86■□□□□ 0.45
LDLR-203ENST00000535915 ERBINQ96RT1 1412 aa17.86■□□□□ 0.45
LDLR-203ENST00000535915 ABCC1P33527 1531 aa17.84■□□□□ 0.45
LDLR-203ENST00000535915 NBPF1Q3BBV0 1214 aa17.84■□□□□ 0.45
LDLR-203ENST00000535915 UHRF1BP1LA0JNW5 1464 aa17.84■□□□□ 0.45
LDLR-203ENST00000535915 MAGI2Q86UL8 1455 aa17.84■□□□□ 0.45
LDLR-203ENST00000535915 PNISRQ8TF01 805 aaKnown RBP17.84■□□□□ 0.45
LDLR-203ENST00000535915 SMG6Q86US8 1419 aaKnown RBP17.83■□□□□ 0.44
LDLR-203ENST00000535915 LAMC1P11047 1609 aa17.82■□□□□ 0.44
LDLR-203ENST00000535915 KTN1Q86UP2 1357 aaKnown RBP17.82■□□□□ 0.44
LDLR-203ENST00000535915 EIF2AK4Q9P2K8 1649 aaKnown RBP17.82■□□□□ 0.44
LDLR-203ENST00000535915 RALBP1Q15311 655 aa17.81■□□□□ 0.44
LDLR-203ENST00000535915 MYBBP1AQ9BQG0 1328 aaKnown RBP17.81■□□□□ 0.44
LDLR-203ENST00000535915 TRAPPC8Q9Y2L5 1435 aa17.8■□□□□ 0.44
LDLR-203ENST00000535915 GPRASP1Q5JY77 1395 aa17.8■□□□□ 0.44
LDLR-203ENST00000535915 ATP10AO60312 1499 aa17.8■□□□□ 0.44
LDLR-203ENST00000535915 PRDM15P57071 1507 aaPredicted RBP17.8■□□□□ 0.44
LDLR-203ENST00000535915 NUDCQ9Y266 331 aa17.79■□□□□ 0.44
LDLR-203ENST00000535915 BRD4O60885 1362 aaPredicted RBP17.79■□□□□ 0.44
LDLR-203ENST00000535915 SENP3-EIF4A1A0A087X0R7 540 aa17.79■□□□□ 0.44
LDLR-203ENST00000535915 B4GALNT3Q6L9W6 998 aa17.76■□□□□ 0.43
LDLR-203ENST00000535915 SPAG9O60271 1321 aaKnown RBP17.76■□□□□ 0.43
LDLR-203ENST00000535915 COL17A1Q9UMD9 1497 aaPredicted RBP17.76■□□□□ 0.43
LDLR-203ENST00000535915 LRPPRCP42704 1394 aaKnown RBP17.75■□□□□ 0.43
LDLR-203ENST00000535915 AFAP1Q8N556 730 aa17.74■□□□□ 0.43
LDLR-203ENST00000535915 DISP3Q9P2K9 1392 aa17.73■□□□□ 0.43
LDLR-203ENST00000535915 ZFYVE16Q7Z3T8 1539 aa17.73■□□□□ 0.43
LDLR-203ENST00000535915 ARAP3Q8WWN8 1544 aa17.73■□□□□ 0.43
LDLR-203ENST00000535915 TESK2Q96S53 571 aa17.73■□□□□ 0.43
LDLR-203ENST00000535915 RNF17Q9BXT8 1623 aaKnown RBP17.73■□□□□ 0.43
LDLR-203ENST00000535915 PARD3Q8TEW0 1356 aa17.72■□□□□ 0.43
LDLR-203ENST00000535915 RTEL1-TNFRSF6BF6WH68 1400 aa17.72■□□□□ 0.43
LDLR-203ENST00000535915 SPHKAPQ2M3C7 1700 aa17.72■□□□□ 0.43
LDLR-203ENST00000535915 NLRP13Q86W25 1043 aa17.72■□□□□ 0.43
LDLR-203ENST00000535915 CEP152O94986 1710 aa17.71■□□□□ 0.43
LDLR-203ENST00000535915 PER1O15534 1290 aaPredicted RBP17.71■□□□□ 0.43
LDLR-203ENST00000535915 TMF1P82094 1093 aa17.69■□□□□ 0.42
LDLR-203ENST00000535915 DEPDC5O75140 1603 aa17.69■□□□□ 0.42
LDLR-203ENST00000535915 WDR7Q9Y4E6 1490 aa17.69■□□□□ 0.42
LDLR-203ENST00000535915 RNF123Q5XPI4 1314 aa17.68■□□□□ 0.42
LDLR-203ENST00000535915 MADDQ8WXG6 1647 aa17.68■□□□□ 0.42
LDLR-203ENST00000535915 TRPM2O94759 1503 aa17.68■□□□□ 0.42
LDLR-203ENST00000535915 ABCA9Q8IUA7 1624 aa17.67■□□□□ 0.42
LDLR-203ENST00000535915 CC2D1BQ5T0F9 858 aaKnown RBP17.67■□□□□ 0.42
LDLR-203ENST00000535915 PANK3Q9H999 370 aa17.67■□□□□ 0.42
LDLR-203ENST00000535915 FANCAO15360 1455 aa17.67■□□□□ 0.42
LDLR-203ENST00000535915 TET3O43151 1660 aa17.67■□□□□ 0.42
LDLR-203ENST00000535915 WASHC2CQ9Y4E1 1318 aa17.66■□□□□ 0.42
LDLR-203ENST00000535915 ATP7AQ04656 1500 aa17.66■□□□□ 0.42
LDLR-203ENST00000535915 IQGAP1P46940 1657 aa17.65■□□□□ 0.42
LDLR-203ENST00000535915 CLTCL1P53675 1640 aa17.65■□□□□ 0.42
LDLR-203ENST00000535915 INO80Q9ULG1 1556 aaPredicted RBP17.65■□□□□ 0.42
LDLR-203ENST00000535915 MYT1LQ9UL68 1186 aa17.65■□□□□ 0.42
LDLR-203ENST00000535915 KANK1Q14678 1352 aa17.63■□□□□ 0.41
LDLR-203ENST00000535915 SALL2Q9Y467 1007 aaPredicted RBP17.63■□□□□ 0.41
LDLR-203ENST00000535915 PTPRTO14522 1441 aa17.63■□□□□ 0.41
LDLR-203ENST00000535915 FANCIQ9NVI1 1328 aa17.61■□□□□ 0.41
LDLR-203ENST00000535915 ADGRL1O94910 1474 aa17.61■□□□□ 0.41
LDLR-203ENST00000535915 CCDC136Q96JN2 1154 aa17.61■□□□□ 0.41
LDLR-203ENST00000535915 KIF3BO15066 747 aa17.6■□□□□ 0.41
LDLR-203ENST00000535915 SCAPERQ9BY12 1400 aa17.6■□□□□ 0.41
LDLR-203ENST00000535915 VWDEQ8N2E2 1590 aa17.59■□□□□ 0.41
LDLR-203ENST00000535915 STAC3Q96MF2 364 aa17.59■□□□□ 0.41
LDLR-203ENST00000535915 SCAF11Q99590 1463 aaKnown RBP17.57■□□□□ 0.4
LDLR-203ENST00000535915 MSH5O43196 834 aa17.57■□□□□ 0.4
LDLR-203ENST00000535915 PDE3BQ13370 1112 aa17.57■□□□□ 0.4
LDLR-203ENST00000535915 KIF1BO60333 1816 aa17.56■□□□□ 0.4
LDLR-203ENST00000535915 ASXL2Q76L83 1435 aa17.56■□□□□ 0.4
LDLR-203ENST00000535915 KIAA1210Q9ULL0 1709 aa17.55■□□□□ 0.4
LDLR-203ENST00000535915 MROH1Q8NDA8 1641 aa17.55■□□□□ 0.4
LDLR-203ENST00000535915 RCAN3Q9UKA8 241 aa17.55■□□□□ 0.4
LDLR-203ENST00000535915 RRP1P56182 461 aaKnown RBP17.54■□□□□ 0.4
LDLR-203ENST00000535915 CDCA8Q53HL2 280 aa17.54■□□□□ 0.4
LDLR-203ENST00000535915 KNSTRNQ9Y448 316 aa17.54■□□□□ 0.4
LDLR-203ENST00000535915 BLMP54132 1417 aaPredicted RBP17.54■□□□□ 0.4
LDLR-203ENST00000535915 SYNMO15061 1565 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms