RNA–Protein interactions for RNA: ENST00000531243.2

PABPC4-225, Transcript of poly(A) binding protein cytoplasmic 4, human

TSL 4

Gene PABPC4, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC4-225	ENST00000531243	HFM1	A2PYH4	1435 aa		31.98	■■■□□ 2.71
PABPC4-225	ENST00000531243	TRIM26	Q12899	539 aa	Predicted RBP	31.96	■■■□□ 2.71
PABPC4-225	ENST00000531243	FAM135A	Q9P2D6	1515 aa		31.95	■■■□□ 2.7
PABPC4-225	ENST00000531243	NAIP	Q13075	1403 aa		31.94	■■■□□ 2.7
PABPC4-225	ENST00000531243	MADD	Q8WXG6	1647 aa		31.94	■■■□□ 2.7
PABPC4-225	ENST00000531243	DEPDC5	O75140	1603 aa		31.93	■■■□□ 2.7
PABPC4-225	ENST00000531243	KANK1	Q14678	1352 aa		31.91	■■■□□ 2.7
PABPC4-225	ENST00000531243	CNTLN	Q9NXG0	1405 aa		31.91	■■■□□ 2.7
PABPC4-225	ENST00000531243	RIMS1	Q86UR5	1692 aa	Known RBP	31.9	■■■□□ 2.7
PABPC4-225	ENST00000531243	ZC3H13	Q5T200	1668 aa	Known RBP	31.89	■■■□□ 2.7
PABPC4-225	ENST00000531243	KDM4F	A0A1W2PPD8	638 aa		31.88	■■■□□ 2.69
PABPC4-225	ENST00000531243	PRDM15	P57071	1507 aa	Predicted RBP	31.88	■■■□□ 2.69
PABPC4-225	ENST00000531243	ACIN1	Q9UKV3	1341 aa	Known RBP	31.87	■■■□□ 2.69
PABPC4-225	ENST00000531243	CLTC	Q00610	1675 aa	Known RBP	31.86	■■■□□ 2.69
PABPC4-225	ENST00000531243	KDM5D	Q9BY66	1539 aa		31.86	■■■□□ 2.69
PABPC4-225	ENST00000531243	WASHC2C	Q9Y4E1	1318 aa		31.86	■■■□□ 2.69
PABPC4-225	ENST00000531243	MROH2A	A6NES4	1674 aa		31.86	■■■□□ 2.69
PABPC4-225	ENST00000531243	MROH1	Q8NDA8	1641 aa		31.85	■■■□□ 2.69
PABPC4-225	ENST00000531243	UNC13B	O14795	1591 aa		31.85	■■■□□ 2.69
PABPC4-225	ENST00000531243	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.84	■■■□□ 2.69	4e-6	■□□□□ 8.4
PABPC4-225	ENST00000531243	SETD5	Q9C0A6	1442 aa		31.83	■■■□□ 2.69
PABPC4-225	ENST00000531243	CEP152	O94986	1710 aa		31.8	■■■□□ 2.68
PABPC4-225	ENST00000531243	PTPRM	P28827	1452 aa		31.77	■■■□□ 2.68
PABPC4-225	ENST00000531243	ABCC3	O15438	1527 aa		31.76	■■■□□ 2.68
PABPC4-225	ENST00000531243	VWDE	Q8N2E2	1590 aa		31.75	■■■□□ 2.67
PABPC4-225	ENST00000531243	C3	P01024	1663 aa		31.74	■■■□□ 2.67
PABPC4-225	ENST00000531243	NUP155	O75694	1391 aa		31.73	■■■□□ 2.67
PABPC4-225	ENST00000531243	ZMYM3	Q14202	1370 aa		31.73	■■■□□ 2.67
PABPC4-225	ENST00000531243	CAMSAP1	Q5T5Y3	1602 aa		31.73	■■■□□ 2.67
PABPC4-225	ENST00000531243	IQGAP3	Q86VI3	1631 aa		31.73	■■■□□ 2.67
PABPC4-225	ENST00000531243	LMTK2	Q8IWU2	1503 aa		31.72	■■■□□ 2.67
PABPC4-225	ENST00000531243	TRIM52	Q96A61	297 aa		31.71	■■■□□ 2.67
PABPC4-225	ENST00000531243	RAB3GAP2	Q9H2M9	1393 aa		31.68	■■■□□ 2.66
PABPC4-225	ENST00000531243	TET3	O43151	1660 aa		31.68	■■■□□ 2.66
PABPC4-225	ENST00000531243	HRC	P23327	699 aa		31.68	■■■□□ 2.66
PABPC4-225	ENST00000531243	PLPPR3	Q6T4P5	718 aa		31.65	■■■□□ 2.66
PABPC4-225	ENST00000531243	SETD1B	Q9UPS6	1966 aa	Known RBP	31.64	■■■□□ 2.66
PABPC4-225	ENST00000531243	ARHGAP31	Q2M1Z3	1444 aa		31.63	■■■□□ 2.65
PABPC4-225	ENST00000531243	PZP	P20742	1482 aa		31.63	■■■□□ 2.65
PABPC4-225	ENST00000531243	CFAP65	Q6ZU64	1925 aa	Known RBP	31.63	■■■□□ 2.65
PABPC4-225	ENST00000531243	EFCAB6	Q5THR3	1501 aa		31.62	■■■□□ 2.65
PABPC4-225	ENST00000531243	CEBPA	P49715	358 aa	Predicted RBP	31.61	■■■□□ 2.65
PABPC4-225	ENST00000531243	RPRD2	Q5VT52	1461 aa	Known RBP	31.59	■■■□□ 2.65
PABPC4-225	ENST00000531243	NPAT	Q14207	1427 aa		31.58	■■■□□ 2.65
PABPC4-225	ENST00000531243	PREX1	Q8TCU6	1659 aa		31.54	■■■□□ 2.64
PABPC4-225	ENST00000531243	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.54	■■■□□ 2.64
PABPC4-225	ENST00000531243		E9PCH4	1651 aa		31.54	■■■□□ 2.64
PABPC4-225	ENST00000531243	PCGF6	Q9BYE7	350 aa		31.51	■■■□□ 2.63
PABPC4-225	ENST00000531243	SPATA31D1	Q6ZQQ2	1576 aa		31.5	■■■□□ 2.63
PABPC4-225	ENST00000531243	ERVK-7	P63135	1459 aa		31.49	■■■□□ 2.63
PABPC4-225	ENST00000531243	FBXO31	Q5XUX0	539 aa	Predicted RBP	31.47	■■■□□ 2.63
PABPC4-225	ENST00000531243	TNR	Q92752	1358 aa		31.46	■■■□□ 2.63
PABPC4-225	ENST00000531243	MPHOSPH9	Q99550	1183 aa		31.46	■■■□□ 2.63
PABPC4-225	ENST00000531243	PKD2	Q13563	968 aa		31.44	■■■□□ 2.62
PABPC4-225	ENST00000531243	UHRF1BP1	Q6BDS2	1440 aa		31.43	■■■□□ 2.62
PABPC4-225	ENST00000531243	SPHKAP	Q2M3C7	1700 aa		31.43	■■■□□ 2.62
PABPC4-225	ENST00000531243	MYO3A	Q8NEV4	1616 aa		31.41	■■■□□ 2.62
PABPC4-225	ENST00000531243	NOS1	P29475	1434 aa		31.4	■■■□□ 2.62
PABPC4-225	ENST00000531243	NLRP1	Q9C000	1473 aa		31.39	■■■□□ 2.62
PABPC4-225	ENST00000531243	ZNF142	P52746	1687 aa	Predicted RBP	31.36	■■■□□ 2.61
PABPC4-225	ENST00000531243	SLC52A1	Q9NWF4	448 aa		31.35	■■■□□ 2.61
PABPC4-225	ENST00000531243	SYNM	O15061	1565 aa		31.34	■■■□□ 2.61
PABPC4-225	ENST00000531243	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.32	■■■□□ 2.6
PABPC4-225	ENST00000531243	A2ML1	A8K2U0	1454 aa		31.32	■■■□□ 2.6
PABPC4-225	ENST00000531243	PTPRT	O14522	1441 aa		31.32	■■■□□ 2.6
PABPC4-225	ENST00000531243	TRPM2	O94759	1503 aa		31.29	■■■□□ 2.6
PABPC4-225	ENST00000531243	PIK3C2B	O00750	1634 aa		31.27	■■■□□ 2.6
PABPC4-225	ENST00000531243	STAG3	Q9UJ98	1225 aa		31.27	■■■□□ 2.6
PABPC4-225	ENST00000531243	LMTK3	Q96Q04	1460 aa		31.27	■■■□□ 2.6
PABPC4-225	ENST00000531243	KDM5A	P29375	1690 aa	Known RBP	31.26	■■■□□ 2.6
PABPC4-225	ENST00000531243	UGGT1	Q9NYU2	1555 aa		31.26	■■■□□ 2.59
PABPC4-225	ENST00000531243	FOXD1	Q16676	465 aa		31.25	■■■□□ 2.59
PABPC4-225	ENST00000531243	KIF1B	O60333	1816 aa		31.24	■■■□□ 2.59
PABPC4-225	ENST00000531243	IDI1	Q13907	227 aa		31.24	■■■□□ 2.59
PABPC4-225	ENST00000531243	UBR1	Q8IWV7	1749 aa		31.22	■■■□□ 2.59
PABPC4-225	ENST00000531243	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.22	■■■□□ 2.59
PABPC4-225	ENST00000531243	CCDC144A	A2RUR9	1427 aa		31.2	■■■□□ 2.59
PABPC4-225	ENST00000531243	CLTCL1	P53675	1640 aa		31.19	■■■□□ 2.58
PABPC4-225	ENST00000531243	PLA2R1	Q13018	1463 aa		31.18	■■■□□ 2.58
PABPC4-225	ENST00000531243	ADGRB3	O60242	1522 aa		31.18	■■■□□ 2.58
PABPC4-225	ENST00000531243	CHGA	P10645	457 aa	Known RBP	31.15	■■■□□ 2.58
PABPC4-225	ENST00000531243	MYO5B	Q9ULV0	1848 aa		31.14	■■■□□ 2.58
PABPC4-225	ENST00000531243	DHX57	Q6P158	1386 aa	Known RBP	31.14	■■■□□ 2.58
PABPC4-225	ENST00000531243	TMEM131L	A2VDJ0	1609 aa		31.13	■■■□□ 2.57
PABPC4-225	ENST00000531243	ANKRD30B	Q9BXX2	1392 aa		31.13	■■■□□ 2.57
PABPC4-225	ENST00000531243	HSPA2	P54652	639 aa		31.1	■■■□□ 2.57
PABPC4-225	ENST00000531243	HDGF	P51858	240 aa	Known RBP	31.08	■■■□□ 2.57
PABPC4-225	ENST00000531243	POLR1A	O95602	1720 aa	Predicted RBP	31.05	■■■□□ 2.56
PABPC4-225	ENST00000531243	SLIT1	O75093	1534 aa		31.04	■■■□□ 2.56
PABPC4-225	ENST00000531243	ZNF326	Q5BKZ1	582 aa	Known RBP	31.04	■■■□□ 2.56
PABPC4-225	ENST00000531243	EID1	Q9Y6B2	187 aa		31.04	■■■□□ 2.56
PABPC4-225	ENST00000531243	ANKLE2	Q86XL3	938 aa		31.03	■■■□□ 2.56
PABPC4-225	ENST00000531243	NEURL4	Q96JN8	1562 aa		31.03	■■■□□ 2.56
PABPC4-225	ENST00000531243	TMEM2	Q9UHN6	1383 aa		31.03	■■■□□ 2.56
PABPC4-225	ENST00000531243	ARHGAP23	Q9P227	1491 aa		31.01	■■■□□ 2.55
PABPC4-225	ENST00000531243	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	30.99	■■■□□ 2.55
PABPC4-225	ENST00000531243	STRC	Q7RTU9	1775 aa		30.97	■■■□□ 2.55
PABPC4-225	ENST00000531243	RPGRIP1L	Q68CZ1	1315 aa		30.97	■■■□□ 2.55
PABPC4-225	ENST00000531243	TXNDC2	Q86VQ3	553 aa		30.96	■■■□□ 2.55
PABPC4-225	ENST00000531243	DMRT2	Q9Y5R5	561 aa		30.96	■■■□□ 2.55

Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms