RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DUOX2Q9NRD8 1548 aa31.19■■■□□ 2.58
VPS28-212ENST00000530836 KIF3BO15066 747 aa31.18■■■□□ 2.58
VPS28-212ENST00000530836 BCORL1Q5H9F3 1711 aa31.17■■■□□ 2.58
VPS28-212ENST00000530836 GGT6Q6P531 493 aa31.13■■■□□ 2.57
VPS28-212ENST00000530836 ERBINQ96RT1 1412 aa31.12■■■□□ 2.57
VPS28-212ENST00000530836 ADAMTSL3P82987 1691 aa31.12■■■□□ 2.57
VPS28-212ENST00000530836 PPP6R1Q9UPN7 881 aa31.09■■■□□ 2.57
VPS28-212ENST00000530836 ANKRD50Q9ULJ7 1429 aa31.08■■■□□ 2.57
VPS28-212ENST00000530836 ESF1Q9H501 851 aaKnown RBP31.05■■■□□ 2.56
VPS28-212ENST00000530836 EIF2AK4Q9P2K8 1649 aaKnown RBP31.03■■■□□ 2.56
VPS28-212ENST00000530836 MADDQ8WXG6 1647 aa31.02■■■□□ 2.56
VPS28-212ENST00000530836 TRIM52Q96A61 297 aa30.98■■■□□ 2.55
VPS28-212ENST00000530836 CNTLNQ9NXG0 1405 aa30.97■■■□□ 2.55
VPS28-212ENST00000530836 PTPRMP28827 1452 aa30.97■■■□□ 2.55
VPS28-212ENST00000530836 WASHC2CQ9Y4E1 1318 aa30.96■■■□□ 2.55
VPS28-212ENST00000530836 RNF17Q9BXT8 1623 aaKnown RBP30.96■■■□□ 2.55
VPS28-212ENST00000530836 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.95■■■□□ 2.549e-9■■■□□ 15.1
VPS28-212ENST00000530836 FER1L4A9Z1Z3 1794 aa30.94■■■□□ 2.54
VPS28-212ENST00000530836 RIMS1Q86UR5 1692 aaKnown RBP30.91■■■□□ 2.54
VPS28-212ENST00000530836 MROH1Q8NDA8 1641 aa30.9■■■□□ 2.54
VPS28-212ENST00000530836 ZMYM3Q14202 1370 aa30.9■■■□□ 2.54
VPS28-212ENST00000530836 AEBP2Q6ZN18 517 aaPredicted RBP30.9■■■□□ 2.54
VPS28-212ENST00000530836 FAM135AQ9P2D6 1515 aa30.9■■■□□ 2.54
VPS28-212ENST00000530836 CEBPAP49715 358 aaPredicted RBP30.88■■■□□ 2.53
VPS28-212ENST00000530836 KANK1Q14678 1352 aa30.88■■■□□ 2.53
VPS28-212ENST00000530836 MPHOSPH9Q99550 1183 aa30.87■■■□□ 2.53
VPS28-212ENST00000530836 PRDM15P57071 1507 aaPredicted RBP30.87■■■□□ 2.53
VPS28-212ENST00000530836 KDM5DQ9BY66 1539 aa30.87■■■□□ 2.53
VPS28-212ENST00000530836 DEPDC5O75140 1603 aa30.87■■■□□ 2.53
VPS28-212ENST00000530836 PLPPR3Q6T4P5 718 aa30.86■■■□□ 2.53
VPS28-212ENST00000530836 ABCC3O15438 1527 aa30.83■■■□□ 2.53
VPS28-212ENST00000530836 CLTCQ00610 1675 aaKnown RBP30.83■■■□□ 2.53
VPS28-212ENST00000530836 TIMELESSQ9UNS1 1208 aa30.82■■■□□ 2.52
VPS28-212ENST00000530836 VWDEQ8N2E2 1590 aa30.8■■■□□ 2.52
VPS28-212ENST00000530836 MROH2AA6NES4 1674 aa30.79■■■□□ 2.52
VPS28-212ENST00000530836 NUP155O75694 1391 aa30.79■■■□□ 2.52
VPS28-212ENST00000530836 SLC4A1APQ9BWU0 796 aaKnown RBP30.79■■■□□ 2.52
VPS28-212ENST00000530836 UNC13BO14795 1591 aa30.77■■■□□ 2.52
VPS28-212ENST00000530836 PZPP20742 1482 aa30.77■■■□□ 2.52
VPS28-212ENST00000530836 LMTK2Q8IWU2 1503 aa30.76■■■□□ 2.51
VPS28-212ENST00000530836 ZC3H13Q5T200 1668 aaKnown RBP30.76■■■□□ 2.51
VPS28-212ENST00000530836 C3P01024 1663 aa30.75■■■□□ 2.51
VPS28-212ENST00000530836 ARHGAP31Q2M1Z3 1444 aa30.72■■■□□ 2.51
VPS28-212ENST00000530836 FBXO31Q5XUX0 539 aaPredicted RBP30.72■■■□□ 2.51
VPS28-212ENST00000530836 NPATQ14207 1427 aa30.71■■■□□ 2.51
VPS28-212ENST00000530836 CEP152O94986 1710 aa30.7■■■□□ 2.5
VPS28-212ENST00000530836 SIN3AQ96ST3 1273 aa30.68■■■□□ 2.5
VPS28-212ENST00000530836 CAMSAP1Q5T5Y3 1602 aa30.66■■■□□ 2.5
VPS28-212ENST00000530836 NEUROD1Q13562 356 aa30.65■■■□□ 2.5
VPS28-212ENST00000530836 IQGAP3Q86VI3 1631 aa30.65■■■□□ 2.5
VPS28-212ENST00000530836 ANKRD30BQ9BXX2 1392 aa30.64■■■□□ 2.5
VPS28-212ENST00000530836 EFCAB6Q5THR3 1501 aa30.62■■■□□ 2.49
VPS28-212ENST00000530836 PKD2Q13563 968 aa30.62■■■□□ 2.49
VPS28-212ENST00000530836 TNRQ92752 1358 aa30.6■■■□□ 2.49
VPS28-212ENST00000530836 TET3O43151 1660 aa30.6■■■□□ 2.49
VPS28-212ENST00000530836 ERVK-7P63135 1459 aa30.59■■■□□ 2.49
VPS28-212ENST00000530836 SETD1BQ9UPS6 1966 aaKnown RBP30.58■■■□□ 2.49
VPS28-212ENST00000530836 RPRD2Q5VT52 1461 aaKnown RBP30.58■■■□□ 2.49
VPS28-212ENST00000530836 TONSLQ96HA7 1378 aa30.58■■■□□ 2.49
VPS28-212ENST00000530836 SPATA31D1Q6ZQQ2 1576 aa30.56■■■□□ 2.48
VPS28-212ENST00000530836 FOXD1Q16676 465 aa30.55■■■□□ 2.48
VPS28-212ENST00000530836 UHRF1BP1Q6BDS2 1440 aa30.55■■■□□ 2.48
VPS28-212ENST00000530836 NOS1P29475 1434 aa30.52■■■□□ 2.48
VPS28-212ENST00000530836 LMTK3Q96Q04 1460 aa30.5■■■□□ 2.47
VPS28-212ENST00000530836 PREX1Q8TCU6 1659 aa30.49■■■□□ 2.47
VPS28-212ENST00000530836 E9PCH4 1651 aa30.48■■■□□ 2.47
VPS28-212ENST00000530836 CFAP65Q6ZU64 1925 aaKnown RBP30.47■■■□□ 2.47
VPS28-212ENST00000530836 NLRP1Q9C000 1473 aa30.47■■■□□ 2.47
VPS28-212ENST00000530836 SLC52A1Q9NWF4 448 aa30.45■■■□□ 2.47
VPS28-212ENST00000530836 PPP1R15AO75807 674 aaPredicted RBP30.44■■■□□ 2.46
VPS28-212ENST00000530836 IDI1Q13907 227 aa30.44■■■□□ 2.46
VPS28-212ENST00000530836 MYO3AQ8NEV4 1616 aa30.43■■■□□ 2.46
VPS28-212ENST00000530836 PTPRTO14522 1441 aa30.43■■■□□ 2.46
VPS28-212ENST00000530836 A2ML1A8K2U0 1454 aa30.43■■■□□ 2.46
VPS28-212ENST00000530836 HSPA2P54652 639 aa30.42■■■□□ 2.46
VPS28-212ENST00000530836 SYNMO15061 1565 aa30.41■■■□□ 2.46
VPS28-212ENST00000530836 CEP170BQ9Y4F5 1589 aaPredicted RBP30.39■■■□□ 2.45
VPS28-212ENST00000530836 PLA2R1Q13018 1463 aa30.35■■■□□ 2.45
VPS28-212ENST00000530836 THEMISQ8N1K5 641 aaPredicted RBP30.35■■■□□ 2.45
VPS28-212ENST00000530836 ZNF142P52746 1687 aaPredicted RBP30.34■■■□□ 2.45
VPS28-212ENST00000530836 UGGT1Q9NYU2 1555 aa30.33■■■□□ 2.45
VPS28-212ENST00000530836 CCDC144AA2RUR9 1427 aa30.32■■■□□ 2.44
VPS28-212ENST00000530836 STAG3Q9UJ98 1225 aa30.32■■■□□ 2.44
VPS28-212ENST00000530836 ZNF316A6NFI3 1004 aaPredicted RBP30.31■■■□□ 2.44
VPS28-212ENST00000530836 L3MBTL2Q969R5 705 aa30.3■■■□□ 2.44
VPS28-212ENST00000530836 TRPM2O94759 1503 aa30.29■■■□□ 2.44
VPS28-212ENST00000530836 SPHKAPQ2M3C7 1700 aa30.28■■■□□ 2.44
VPS28-212ENST00000530836 PIK3C2BO00750 1634 aa30.28■■■□□ 2.44
VPS28-212ENST00000530836 CHGAP10645 457 aaKnown RBP30.24■■■□□ 2.43
VPS28-212ENST00000530836 UBR1Q8IWV7 1749 aa30.21■■■□□ 2.43
VPS28-212ENST00000530836 ADGRB3O60242 1522 aa30.21■■■□□ 2.43
VPS28-212ENST00000530836 ANKLE2Q86XL3 938 aa30.2■■■□□ 2.43
VPS28-212ENST00000530836 KDM5AP29375 1690 aaKnown RBP30.19■■■□□ 2.42
VPS28-212ENST00000530836 TMEM2Q9UHN6 1383 aa30.19■■■□□ 2.42
VPS28-212ENST00000530836 CLTCL1P53675 1640 aa30.18■■■□□ 2.42
VPS28-212ENST00000530836 NCKAP5LQ9HCH0 1330 aa30.18■■■□□ 2.42
VPS28-212ENST00000530836 TMEM131LA2VDJ0 1609 aa30.17■■■□□ 2.42
VPS28-212ENST00000530836 ARHGAP23Q9P227 1491 aa30.15■■■□□ 2.42
VPS28-212ENST00000530836 SLIT1O75093 1534 aa30.15■■■□□ 2.42
VPS28-212ENST00000530836 TXNDC2Q86VQ3 553 aa30.14■■■□□ 2.41
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms